BIO508 Groups, Spring 2014
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GroupMembersPaper Presentation DatePaperFinal Presentation DateFinal Project Topic
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1Carla MarquezMonday April 21Valouev et al, Genome Research, 2014, Discovery of recurrent structural variants in nasopharyngeal carcinoma Monday May 5Ovarian cancer
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Siyuan Ma
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Jing Zhao
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2Hooman MirzakhaniMonday April 21Detection and replication of epistasis influencing transcription in humans (Nature 2014)Wed May 7Differential expression in atopic asthma
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Phil Salvatore
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3Chinmay ShuklaWednesday April 23Conserved Seed Pairing, Often Flanked by Adenosines, Indicates that Thousands of Human Genes are MicroRNA Targets
Monday May 5lncRNAs
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Fatima Hussain
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Donald Bryant
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4Tauana CunhaMonday April 28Mock et al. 2008 PNAS Whole-genome expression profiling of the marine
diatom Thalassiosira pseudonana identifies genes involved in silicon
bioprocesses
Mon May 12
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Jernej Trunsek
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Marika Ziesack
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Travis Walton
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Sonia Kim
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5Katherine SilkaitisWednesday April 23"Diet rapidly and reproducibly alters the human gut microbiome" David et al, Nature 2013Mon May 12
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Zain Kassam
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Ashley Vargas
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Phil Karl
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6Xiaoji Wu
Monday April 28Navin et al "Tumour evolution inferred by single-cell sequencing", Nature 2011Wed Apr 30Differentially expressed genes in stellate cells/ cancer cells with stellate/cancer medium
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Hao Liu
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Yu Wang
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7Avery DavisWednesday April 23Sankararaman et al Nature 2014, "The genomic landscape of Neanderthal ancestry in present-day humans"Wed May 7Differential expression between brain regions
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Jacob Layer
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Kelsey Tyssowski
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8Youngji ChoMonday April 28Fan et al. Mol Biol Evol (2014) Whole-genome sequencing of tibetan
macaque (macaca thibetana) provides new insight into the macaque
evolutionary history
Wed Apr 30IdeR TF-binding motif finding
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Wes Wong
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Skye Fishbein
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Phil Grayson
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Eli Gerrick
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