| A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | ##gff-version 3 | sequence_name | start | stop | strand | score | p-value | q-value | matched_sequence | ||||||
2 | There were 20399 motif occurences with a p-value less than 0.001. | CP003862.1 | 1654614 | 1654629 | - | 18.7857 | 2.73e-09 | 0.00795 | ACCAGCAGCTGCACCA | ||||||
3 | DATABASE FSC200ref.fasta | CP003862.1 | 99418 | 99433 | + | 18.6286 | 6.61e-09 | 0.00962 | ACCAACAGCTGCACCA | ||||||
4 | Database contains 1 sequences, 1894157 residues | CP003862.1 | 1697135 | 1697150 | - | 18.4286 | 1.5e-08 | 0.00974 | ACCAACATCATCACCA | ||||||
5 | CP003862.1 | 1529621 | 1529636 | + | 18.3714 | 1.75e-08 | 0.00974 | ACCAGCAGTAGCAGCA | |||||||
6 | MOTIFS motifs.meme (DNA) | CP003862.1 | 1889243 | 1889258 | + | 18.3714 | 1.75e-08 | 0.00974 | ACCAGCAGTAGCAGCA | ||||||
7 | CP003862.1 | 1741006 | 1741021 | + | 18.3143 | 2.08e-08 | 0.00974 | ACCATCATCAGCAGCA | |||||||
8 | MOTIF | WIDTH | BEST POSSIBLE MATCH | CP003862.1 | 1081689 | 1081704 | + | 18.2143 | 2.82e-08 | 0.00974 | AGCAGCATTTGCAGCA | ||||
9 | 1 | 16 | ATCAACATTAGCACCA | CP003862.1 | 1596076 | 1596091 | + | 18.1286 | 3.43e-08 | 0.00974 | ATCAGCATCTTCAGCA | ||||
10 | CP003862.1 | 1448836 | 1448851 | + | 18-led | 3.65e-08 | 0.00974 | AGCAACATCATCACCA | |||||||
11 | Command line: | CP003862.1 | 1452093 | 1452108 | - | 18.0571 | 4.07e-08 | 0.00974 | AGCAACAGTTGCACCA | ||||||
12 | fimo --oc . --verbosity 1 --thresh 0.001 motifs.meme FSC200ref.fasta | CP003862.1 | 1251567 | 1251582 | + | 18.0571 | 4.07e-08 | 0.00974 | ATCAACATCATCAGCA | ||||||
13 | CP003862.1 | 1679889 | 1679904 | + | 18.0429 | 4.2e-08 | 0.00974 | AGCAACAGCTGCAGCA | |||||||
14 | Settings: | CP003862.1 | 1052215 | 1052230 | - | 18.0143 | 4.35e-08 | 0.00974 | AGCAACATCTTCACCA | ||||||
15 | CP003862.1 | 628813 | 628828 | - | 17.9714 | 4.81e-08 | 0.00993 | ATCAGCATTATCAGCA | |||||||
16 | output_directory = . | MEME file name = motifs.meme | sequence file name = FSC200ref.fasta | CP003862.1 | 1702804 | 1702819 | - | 17-zář | 5.59e-08 | 0.00993 | AACATCATTAGCACCA | ||||
17 | background file name = --nrdb-- | alphabet = DNA | max stored scores = 100000 | CP003862.1 | 1607557 | 1607572 | - | 17.8857 | 5.8e-08 | 0.00993 | ACCAACTGCAGCACCA | ||||
18 | allow clobber = true | compute q-values = true | parse genomic coord. = false | CP003862.1 | 854134 | 854149 | + | 17.8857 | 5.8e-08 | 0.00993 | ATCAGCATTTTCAGCA | ||||
19 | text only = false | scan both strands = true | max strand = false | CP003862.1 | 1057784 | 1057799 | - | 17.7714 | 6.94e-08 | 0.0112 | ACCATCATCATCAGCA | ||||
20 | threshold type = p-value | output theshold = 0.001 | pseudocount = 0.1 | CP003862.1 | 1394840 | 1394855 | + | 17-čvn | 9.19e-08 | 0.0125 | ATCAGCTTTTGCAGCA | ||||
21 | alpha = 1 | verbosity = 1 | CP003862.1 | 1403324 | 1403339 | + | 17.5714 | 9.5e-08 | 0.0125 | AACAGCATTTTCAGCA | |||||
22 | CP003862.1 | 793464 | 793479 | - | 17.5571 | 9.78e-08 | 0.0125 | ACCAACTGTTGCACCA | |||||||
23 | CP003862.1 | 794175 | 794190 | - | 17.5429 | 9.98e-08 | 0.0125 | ACCAACAACAGCACCA | |||||||
24 | CP003862.1 | 674885 | 674900 | + | 17-kvě | 1.07e-07 | 0.0125 | AGCAACAGCTTCAGCA | |||||||
25 | CP003862.1 | 155779 | 155794 | + | 17.4857 | 1.09e-07 | 0.0125 | AGCATCAGTAGCAGCA | |||||||
26 | n of match | width | suma | CP003862.1 | 1381270 | 1381285 | + | 17.4714 | 1.11e-07 | 0.0125 | AACAACTTTAGCACCA | ||||
27 | 20399 | 16 | 326384 | CP003862.1 | 983114 | 983129 | + | 17.4429 | 1.16e-07 | 0.0125 | ATCAGTATCAGCACCA | ||||
28 | CP003862.1 | 1082289 | 1082304 | + | 17.4429 | 1.16e-07 | 0.0125 | AGCATCAGCATCACCA | |||||||
29 | CP003862.1 | 1679892 | 1679907 | + | 17.3571 | 1.34e-07 | 0.014 | AACAGCTGCAGCAGCA | |||||||
30 | genome | motif nt | % | CP003862.1 | 192666 | 192681 | - | 17-bře | 1.46e-07 | 0.0142 | CTCAGCATTAGCACCA | ||||
31 | 1894157 | 326384 | 17,23109542 | CP003862.1 | 1312005 | 1312020 | + | 17-bře | 1.46e-07 | 0.0142 | ACCAACATTACCACCA | ||||
32 | CP003862.1 | 1630850 | 1630865 | + | 17.2714 | 1.53e-07 | 0.0142 | ACCAACTTTTTCACCA | |||||||
33 | CP003862.1 | 936034 | 936049 | - | 17.2571 | 1.57e-07 | 0.0142 | AACATCAGCTTCACCA | |||||||
34 | CP003862.1 | 799017 | 799032 | - | 17.2429 | 1.6e-07 | 0.0142 | ATCAGCAACTGCAGCA | |||||||
35 | CP003862.1 | 179560 | 179575 | + | 17.2143 | 1.68e-07 | 0.0143 | TACAACATCTGCACCA | |||||||
36 | CP003862.1 | 197598 | 197613 | + | 17-úno | 1.72e-07 | 0.0143 | ACCAGCATTACCAGCA | |||||||
37 | CP003862.1 | 73221 | 73236 | + | 17.1714 | 1.8e-07 | 0.0145 | AACAACTTCATCACCA | |||||||
38 | CP003862.1 | 176879 | 176894 | + | 17.1429 | 1.88e-07 | 0.0148 | ACCATCTGCTGCAGCA | |||||||
39 | CP003862.1 | 1078719 | 1078734 | + | 17.1143 | 1.99e-07 | 0.0152 | TACAGCAGCTGCACCA | |||||||
40 | CP003862.1 | 872805 | 872820 | - | 17.0714 | 2.14e-07 | 0.0159 | TTCAACATCATCACCA | |||||||
41 | CP003862.1 | 848129 | 848144 | - | 17.0429 | 2.24e-07 | 0.0159 | ACCAACAATAGCAGCA | |||||||
42 | CP003862.1 | 1251534 | 1251549 | + | 17.0429 | 2.24e-07 | 0.0159 | ACCAACAGTACCACCA | |||||||
43 | CP003862.1 | 1216515 | 1216530 | + | 17.0286 | 2.3e-07 | 0.0159 | AACAGCATTACCACCA | |||||||
44 | CP003862.1 | 359282 | 359297 | + | 16.9714 | 2.52e-07 | 0.0167 | AGCAGTATCAGCAGCA | |||||||
45 | CP003862.1 | 135447 | 135462 | + | 16.9571 | 2.59e-07 | 0.0167 | AGCAACAACAGCAGCA | |||||||
46 | CP003862.1 | 381917 | 381932 | + | 16.9571 | 2.59e-07 | 0.0167 | ATCAATATTTGCACCA | |||||||
47 | CP003862.1 | 1054544 | 1054559 | - | 16.9143 | 2.77e-07 | 0.0175 | ACCAGCAATATCACCA | |||||||
48 | CP003862.1 | 623744 | 623759 | - | 16.8429 | 3.1e-07 | 0.0192 | AACAACTTTTTCACCA | |||||||
49 | CP003862.1 | 1086625 | 1086640 | - | 16.7857 | 3.42e-07 | 0.0203 | ATCAATATTAGCAGCA | |||||||
50 | CP003862.1 | 1505097 | 1505112 | - | 16.7857 | 3.42e-07 | 0.0203 | ATCAATATTAGCAGCA | |||||||
51 | CP003862.1 | 1602873 | 1602888 | - | 16.7714 | 3.5e-07 | 0.0204 | TGCAGCATTATCACCA | |||||||
52 | CP003862.1 | 1085524 | 1085539 | + | 16.7571 | 3.58e-07 | 0.0204 | AACAGCACCAGCACCA | |||||||
53 | CP003862.1 | 1504648 | 1504663 | - | 16.7286 | 3.74e-07 | 0.0209 | AACATCTTTTGCAGCA | |||||||
54 | CP003862.1 | 1142873 | 1142888 | - | 16-čvc | 3.92e-07 | 0.021 | TTCAGCTTTAGCACCA | |||||||
55 | CP003862.1 | 633893 | 633908 | + | 16-čvc | 3.92e-07 | 0.021 | ATCTTCATTAGCACCA | |||||||
56 | CP003862.1 | 914802 | 914817 | - | 16.6714 | 4.1e-07 | 0.021 | ATTAGCATTTGCAGCA | |||||||
57 | CP003862.1 | 1019855 | 1019870 | - | 16.6714 | 4.1e-07 | 0.021 | ACCAACAATTTCACCA | |||||||
58 | CP003862.1 | 1649124 | 1649139 | + | 16.6571 | 4.17e-07 | 0.021 | ACCATTATCTGCAGCA | |||||||
59 | CP003862.1 | 1085530 | 1085545 | + | 16.6429 | 4.26e-07 | 0.021 | ACCAGCACCATCACCA | |||||||
60 | CP003862.1 | 903609 | 903624 | - | 16.6286 | 4.36e-07 | 0.021 | AGCATCTTTATCACCA | |||||||
61 | CP003862.1 | 1741162 | 1741177 | + | 16.6143 | 4.45e-07 | 0.021 | ACCAGCTTCACCAGCA | |||||||
62 | CP003862.1 | 451239 | 451254 | - | 16-čvn | 4.54e-07 | 0.021 | ACCATCAACATCACCA | |||||||
63 | CP003862.1 | 1062761 | 1062776 | + | 16-čvn | 4.54e-07 | 0.021 | ATCAACAGCAGCAACA | |||||||
64 | CP003862.1 | 1082127 | 1082142 | + | 16-čvn | 4.54e-07 | 0.021 | AACAACACCAGCACCA | |||||||
65 | CP003862.1 | 654243 | 654258 | - | 16.5714 | 4.73e-07 | 0.0215 | ACCATCATCAGCAACA | |||||||
66 | CP003862.1 | 1462788 | 1462803 | + | 16.5429 | 4.94e-07 | 0.0218 | ATCAACAACTTCAGCA | |||||||
67 | CP003862.1 | 1729165 | 1729180 | + | 16.5429 | 4.94e-07 | 0.0218 | ATCAGCAATATCAGCA | |||||||
68 | CP003862.1 | 226237 | 226252 | - | 16.4857 | 5.37e-07 | 0.0232 | TTCAACAGTTTCACCA | |||||||
69 | CP003862.1 | 554202 | 554217 | - | 16.4571 | 5.6e-07 | 0.0232 | ATTAGCATCATCAGCA | |||||||
70 | CP003862.1 | 1093267 | 1093282 | - | 16.4571 | 5.6e-07 | 0.0232 | AACAGCATTAGCAACA | |||||||
71 | CP003862.1 | 37265 | 37280 | + | 16.4429 | 5.71e-07 | 0.0232 | AATAGCAGTAGCACCA | |||||||
72 | CP003862.1 | 431519 | 431534 | - | 16.4286 | 5.83e-07 | 0.0232 | ACCAACAGTTGCACCT | |||||||
73 | CP003862.1 | 1596601 | 1596616 | + | 16.4286 | 5.83e-07 | 0.0232 | AGCAACATCAGCAGCT | |||||||
74 | CP003862.1 | 524308 | 524323 | - | 16-dub | 6.04e-07 | 0.0232 | AACTGCATTATCACCA | |||||||
75 | CP003862.1 | 1008923 | 1008938 | - | 16-dub | 6.04e-07 | 0.0232 | ATCTTCATCATCACCA | |||||||
76 | CP003862.1 | 303855 | 303870 | - | 16.3857 | 6.17e-07 | 0.0232 | AGCAACAGCAGCAACA | |||||||
77 | CP003862.1 | 1666105 | 1666120 | + | 16.3857 | 6.17e-07 | 0.0232 | AACTTCATTAGCACCA | |||||||
78 | CP003862.1 | 617864 | 617879 | - | 16.3571 | 6.41e-07 | 0.0232 | ATTATCATCTGCAGCA | |||||||
79 | CP003862.1 | 1428573 | 1428588 | + | 16.3571 | 6.41e-07 | 0.0232 | AACAGCTACTGCACCA | |||||||
80 | CP003862.1 | 449508 | 449523 | - | 16.3429 | 6.53e-07 | 0.0232 | ACCAACATCTTCAACA | |||||||
81 | CP003862.1 | 85888 | 85903 | - | 16.3286 | 6.64e-07 | 0.0232 | ATCTGCTTCTGCAGCA | |||||||
82 | CP003862.1 | 874374 | 874389 | - | 16.3286 | 6.64e-07 | 0.0232 | TTCATCAGCTTCACCA | |||||||
83 | CP003862.1 | 888297 | 888312 | + | 16.3286 | 6.64e-07 | 0.0232 | AACAGTATCATCAGCA | |||||||
84 | CP003862.1 | 1741786 | 1741801 | + | 16.3286 | 6.64e-07 | 0.0232 | TTCATCATCTTCAGCA | |||||||
85 | CP003862.1 | 733519 | 733534 | - | 16.3143 | 6.76e-07 | 0.0232 | ATCAACATCATCAACA | |||||||
86 | CP003862.1 | 1565171 | 1565186 | - | 16.3143 | 6.76e-07 | 0.0232 | ATTAACATTATCACCA | |||||||
87 | CP003862.1 | 1804280 | 1804295 | + | 16-bře | 6.9e-07 | 0.0233 | ACCAGCACCTTCAGCA | |||||||
88 | CP003862.1 | 1178182 | 1178197 | + | 16.2714 | 7.16e-07 | 0.0233 | CACAACATCATCAGCA | |||||||
89 | CP003862.1 | 1819472 | 1819487 | + | 16.2571 | 7.29e-07 | 0.0233 | AACAGCACTAGCAGCA | |||||||
90 | CP003862.1 | 237917 | 237932 | - | 16.2429 | 7.42e-07 | 0.0233 | AGCAATTTCAGCACCA | |||||||
91 | CP003862.1 | 994891 | 994906 | - | 16.2429 | 7.42e-07 | 0.0233 | AACTACATTATCACCA | |||||||
92 | CP003862.1 | 1683623 | 1683638 | + | 16.2429 | 7.42e-07 | 0.0233 | TTCAACTTCATCACCA | |||||||
93 | CP003862.1 | 1874810 | 1874825 | + | 16.2429 | 7.42e-07 | 0.0233 | ACCAATTTTTGCACCA | |||||||
94 | CP003862.1 | 18545 | 18560 | + | 16.2286 | 7.56e-07 | 0.0233 | ATCAATAGCATCAGCA | |||||||
95 | CP003862.1 | 819125 | 819140 | - | 16.2143 | 7.71e-07 | 0.0233 | CTCAGCTTTAGCAGCA | |||||||
96 | CP003862.1 | 1498130 | 1498145 | - | 16.2143 | 7.71e-07 | 0.0233 | ATCAGCTACATCACCA | |||||||
97 | CP003862.1 | 1458759 | 1458774 | + | 16.2143 | 7.71e-07 | 0.0233 | ACCAACTTTACCAGCA | |||||||
98 | CP003862.1 | 1656596 | 1656611 | - | 16-úno | 7.86e-07 | 0.0233 | AACAGCAGTAGCAACA | |||||||
99 | CP003862.1 | 1741009 | 1741024 | + | 16-úno | 7.86e-07 | 0.0233 | ATCATCAGCAGCAACA | |||||||
100 | CP003862.1 | 286282 | 286297 | - | 16.1429 | 8.43e-07 | 0.0248 | ACCAAAATTAGCAGCA |