Public "whole genome" chrY data analysis
 Share
The version of the browser you are using is no longer supported. Please upgrade to a supported browser.Dismiss

 
View only
 
 
Still loading...
ABC
1
Public "whole genome" chrY data analysis
2
3
Summary of terms of use: The contents of this spreadsheet, including sample classification and variant details, are available to be used and shared freely, provided: 1) this spreadsheet (and its contributors, as appropriate) are acknowledged; 2) the relevant individuals (listed below) are contacted to inform them prior to use of any of the spreadsheet contents for any academic or commercial work, analysis, product, etc. (i.e. please contact the appropriate individuals below if you intend to make use of this analysis); and 3) the underlying datasets (e.g. Personal Genome Project or 1000 Genomes Project) are cited or acknowledged, as appropriate. The analysis is provided on an as-is basis, without guarantee for accuracy or completeness. If you are interested in contributing, collaborating, making corrections, or discussing content, you are encouraged to contact one or more of the individuals listed below.
4
Please see the following for further details:https://sites.google.com/site/yanalysis/
5
6
Current active contributors (last update 2013/07/13)Areas of focusContact info
7
A.G.Hg-R, Hg-I, Hg-Oandygrierson22 at gmail dot com
8
Bonnie SchrackHg-A, Hg-B, Hg-Jbschrack1 at comcast dot net
9
Chris RottensteinerHg-J2achrisr.gen at gmail dot com
10
David ReynoldsHg-Rdna at daver dot info
11
Greg Magoongeneral (coordination, etc.), Hg-R, Hg-I, sample classificationgregm4584 at gmail dot com
12
Ray Banksroot area, Hgs C, D, E, F, G, H, K, L, M, N, P, Q, S, Tdnagrouper2 at gmail dot com
13
R.R.Hg-R
14
Roman SychevHg-I, Hg-R, Hg-J2b
15
Steve FixHg-E-M215fixdnaproject at shentel dot net
16
V.MasHg-J1victar at genogenea dot come
17
Vince TilroeHg-R, Hg-J2bvtilroe at gmail dot com
18
19
Contributors also gratefully acknowledge and appreciate helpful discussions with hundreds of individuals participating in the broader genetic genealogy community
20
Past contributors
21
P.O.Hg-R
22
asdgood
23
G.H.Hg-O
24
L.M.Hg-R
25
26
Dataset citations
27
1000 Genomes Projecthttp://www.1000genomes.orgAn integrated map of genetic variation from 1,092 human genomes, McVean et Al, Nature 491, 56–65 (01 November 2012) doi:10.1038/nature11632
http://www.nature.com/nature/journal/v491/n7422/full/nature11632.html
28
Personal Genome Projecthttp://www.personalgenomes.orgBall, Madeleine P., et al. "A public resource facilitating clinical use of genomes." Proceedings of the National Academy of Sciences 109.30 (2012): 11920-11927.
http://www.pnas.org/content/109/30/11920.long
29
30
Associated publications
31
Rocca RA, Magoon G, Reynolds DF, Krahn T, Tilroe VO, Op den Velde Boots PM, Grierson AJ (2012) Discovery of Western European R1b1a2 Y Chromosome Variants in 1000 Genomes Project Data: An Online Community Approach. PLoS ONE 7(7): e41634. doi:10.1371/journal.pone.0041634http://dx.doi.org/10.1371/journal.pone.0041634
32
Gregory R Magoon, Raymond H Banks, Christian Rottensteiner, Bonnie E Schrack, Vincent O Tilroe, Terry Robb, Andrew J Grierson (2013) Generation of high-resolution a priori Y-chromosome phylogenies using “next-generation” sequencing data. bioRxiv preprint doi:10.1101/000802http://dx.doi.org/10.1101/000802
33
34
35
36
Loading...
 
 
 
README
Summary statistics
U106 Samples
U106 Candidate Variants
L21 Samples
L21 Candidate Variants
U152 Samples
U152 Candidate Variants
R1a Samples
R1a Candidate Variants
DF27 Samples
DF27 Candidate Variants
Misc. P312 Samples
Misc. P312 Candidate Variants
Unassigned P310 Samples
Misc Hg R Samples
Misc R1b Variants
R2a Candidate Variants
Misc (xR) Samples/partial Hgs
A Samples
A0 Candidate Variants
A1a Candidate Variants
A1a Candidate Variants (Cont.)
A1b Candidate Variants
B Samples
BT Candidate Variants
B Candidate Variants
C Samples
C Candidate Variants
D Samples
D Candidate Variants
E Samples
E Root Candidate Variants
E Candidate Variants
E-M33 Variants
E-U175 Samples
E-U175 Candidate Variants
E-M191 Samples
E-M191 Candidate Variants
F Samples
G Samples
G Candidate Variants
G-L140 Candidate Variants
H Samples
H Candidate Variants
H-Z5857 Candidate Variants
I1 Samples
I1 Candidate Variants
I2 Samples
I2 Candidate Variants
IJK Samples
J Samples
J1 Candidate Variants
J2 Candidate Variants
K Samples
L Samples
L Candidate Variants
LT Variants
M Samples
N Samples
N Candidate Variants
NO Candidate Variants
NO Upstream samples
O samples
O Candidate Variants
P Samples
Q Samples
Q Candidate Variants
S Samples
T Samples
T Candidate Variants
Ancient Hominid Samples
Unassigned Samples
Root level Candidate Variants
Phase III Affy data staging
CAGI mapping
Known SNPs (Build 37)