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DateName (student/RA)Service DetailsNo. Of samplesStart dateDeadline StatusPriority levelAny questions P.I from our groupOutside P.I /DoctorContact
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2020/09/29Ching-Yu, Shihmetagenomic analysis1. 59 pairs (There is no sample175 in raw fastq data so it should be removed in clinical data, which I have already checked with JOB and Dr. Chen)
2. JOB said Dr. Chen has sent samples to him but I am not sure the exact number of the samples yet.		2020/09/291. Finished
2.Yet to recieve		Dr. Tsai陳國興醫師
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2020/09/30Ching-Yu, Shihmethylation analysis102020/09/301. check annotation info with JOB, and wait for reply
2. heatmap and IPA with top 1000 genes and 8 conditions		Dr. Tsai林芯伃醫師
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2020/11/12Ching-Yu, Shihmetagenomic analysis59 pairs2020/10/15doneDr. Tsai陳國興醫師
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2020/11/12Ching-Yu, Shihmethylation analysis102020/11/05IPA, heatmap, statistical analysis, write methodsDr. Tsai林芯伃醫師
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2020/11/12Ching-Yu, Shihtrim adapters162020/10/26trim adapters1Dr. Tsai海洋所陳韋仁老師
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2020/11/12Ching-Yu, ShihATAC-seq42020/11/10QCDr. Lai生理所張哲逢老師
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2020/11/12Ching-Yu, ShihSingle Cell RNA-seq32020/07/31fold change and anova in aggregation data
trajectory in M4045		Dr. Lai潘思宇醫師
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2020/11/12Ching-Yu, ShihR package2020/09/30add new functionsDr. Lu
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2020/11/12Ching-Yu, Shihmethylation analysis322020/11/04doneDr. Lu江盈澄醫師
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2020/11/12Hsin-ying, LeemRNA-seq analysis15 samples (5 groups)2020/10/07answering questions
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2020/11/12Hsin-ying, LeeRNA-seq4 samples (4 groups)2020/11/06pathway
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2020/11/19Hsin-ying, Leepseudomonas bacteria WGS2020/11/233weeksDe-Novo, Done
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2020/12/18Yuan-Mao Hung16S adapter trimming32 samples2020/12/18DoneDr. Tsai海洋所陳韋壬老師
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2021/7/2Yuan-Mao Hung16S data analysis2 samples2021/7/5DoneDr. Chuang生醫電資所-曾宇鳳老師
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2022/1/5Ching-Yu, Shihe-Fish seq, (Identical to metagenome adapters) (R1 adapter trimming and QC only, do not need to analyze) Please offer the clean reads.72022/1/5DoneHighDr. Tsai國立臺灣大學海洋研究所/陳韋仁老師林秀貞, Michelle hsiuchen@ntu.edu.tw 02-33661384
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2022/1/5Ching-Yu, ShihMetagenome (Human)52ModerateDr. Tsai臺大醫院腫瘤醫學部/陳國興醫師陳國興醫師
019614@ntuh.gov.tw
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2022/1/25Ching-Yu, ShihddRAD(amplicon)-seq (2*300bp) , (Identical to metagenome adapters) (adapter trimming and QC only, do not need to analyze) Please offer the clean reads.662022/1/25ModerateDr. Tsai國立臺灣大學海洋研究所/陳韋仁老師林秀貞, Michelle hsiuchen@ntu.edu.tw 02-33661384
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