| A | B | C | D | E | F | G | |
|---|---|---|---|---|---|---|---|
1 | Last Update Feb 2022 | ||||||
2 | Member | Level | Time Trained | Previous Institute | Highest Degree | Title of Research Project | Current Position |
3 | Peter Mossel | Analyst | 1985-1990 | Uni Wisconsin | Ph.D. | Clinical decision support | Software Engineer, TD Ameritrade |
4 | Janie Weiss | Programmer | 1987-1994 | Columbia University | B.A. | Manage computer facilities | Head of Cancer Center Compute Facility, Columbia University |
5 | Susan Kisler | Programmer | 1991-1994 | Columbia University | B.A. | Database developer tumor registry | Database lead, Columbia University |
6 | Ilya Shindyalov | Postdoc | 1992-2005 | Novosibirsk State University | Ph.D. | Structural genomics and protein databases | Private Consultant |
7 | Weider Chang | Postdoc | 1992-1995 | Cornell University | Ph.D. | Object oriented database development | Analyst Advanced IT Solutions |
8 | Jamshed Cooper | Programmer | 1992-1995 | Columbia University | M.S. | Website development | Director Merill Lynch |
9 | John Biggs | Programmer | 1993-1995 | Columbia University | B.S. | Database development | Unknown |
10 | Misha Ponomarenko | Postdoc | 1996-1998 | Novosibirsk State University | Ph.D. | Protein-protein interactions | Prof. Uni of Novosibirsk |
11 | Wolfgang Bluhm | Postdoc | 1996-2000 | UC San Diego | Ph.D. | Length-History Dependence of Myocardial Contraction | Production Manager Protein Data Bank, SDSC/UCSD |
12 | Gregory Quinn | Postdoc | 1997-2000 | South Hampton Univ., UK | Ph.D. | High Throughput Proteome Annotation | Programmer Analyst, Protein Data Bank, SDSC/UCSD |
13 | Chris Smith | PostDoc | 1998-2002 | Uni of Nebraska | Ph.D. | Protein kinase resources | Director, UC Cooperative Extension -Ventura County & Hansen Agricultural Research & Extension Center |
14 | John Badger | Postdoc | 1998-2002 | Durham University | Ph.D. | Protein structure alignments | Structural Bioinformatics Staff Scientist |
15 | Peng Yang | Programmer | 1999-2001 | B.S. | Knowledge integration | ||
16 | David Martinez | Programmer | 1999-2002 | B.S. | Systems Administration | ||
17 | Murli Nair | Postdoc | 1999-2001 | Univ. of Poona, India | Ph.D. | The Effect of Post-translational Modifications on Structure | Asst. Prof., Indianan Univ., Southbend |
18 | Dave Hart | Designer | 1998-1999 | Carnegie Mellow | M.S. | Co-author Mac Book and graphics artist | User Services Manager NCAR |
19 | BVB Reddy | Postdoc | 1998-1999 | Univ. of Hyderabad | Ph.D. | Protein Structure Prediction Based on Key Conserved Amino Acid Positions | Associate Prof., City Univ. of New York |
20 | Eric Scheeff | Postdoc | 1998-2005 | UC San Diego | Ph.D. | Multiple Alignments of Protein Strucures and Their Application to Sequence Annotation with Hidden Markov Models | Scientist, Salk Institute |
21 | Kenneth Yoshimoto | Postdoc | 1998-2000 | UC Irvine | Ph.D. | PDB Software Developemnt | Research Scientist, Montana State Univ. |
22 | Kutbuddin Doctor | Postdoc | 1999-2003 | John Hopkins University Ohio State University | Ph.D. | Study of Domains Associated with Apoptosis | Scientist, The Burnahm Institute |
23 | Glenn Otero | Postdoc | 1999 | UCLA University of Ilinois | Ph.D. | PDB Outreach | Dir. Of Bioinformatics, Science Application International Corp. |
24 | John Tate | Postdoc | 1999-2002 | University of Oxford, UK | Ph.D. | Collaborative Molecular Visualization | Scientist Oxford University |
25 | Jenny Gu | Postdoc | 2000-2006 | UC Berkeley UC San Diego | Ph.D. | Primary Sequence Patterns in Protein Dynamics | Humbolt Fellow, University of Muenster, Germany |
26 | Kudbittin Doctor | Postdoc | 2000-2003 | Johns Hopkins University | Ph.D. | Apoptotic domains | Senior scientist, Sanford Burnham Inst. |
27 | Wilfred Li | Postdoc | 2000-2004 | University of So. California | Ph.D. | Proteome Annotation using the Grid | Dir., National Biomedical Computation Resource, SDSC/UCSD |
28 | Apostol Gramada | Postdoc | 2000 - 2011 | U of Utah U of Bucharest | Ph.D. | New Representations of Protein Structure | Asst. Project Scientist, UC San Diego |
29 | Helge Weissig | Postdoc | 2002-2005 | Albert-Ludwig University Germany | Ph.D. | Bias within the Protein Data Bank | Dir. Of Bioinformatics, ActivX Biosciences |
30 | Kristine Briedis | Postdoc | 2001-2008 | UC San Diego Iowa State University | Ph.D. | Co-evolution of Kinases and Phosphatases | Scientist, Accelrys |
31 | Jo Lan Chung | Postdoc | 2001-2006 | National Taiwan University UC San Diego | Ph.D. | Protein-protein interactions | Scientific annotator Flybase Project Stanford University |
32 | John Kowalski | Programmer | 2001-2003 | U. Nevada Las vegas | B.S. | System Administrator | Systems Admin, Uni Nevada |
33 | David Padilla | Programmer | 2001-2003 | UCSD | B.S. | PDB programmer | Programmer, UCSD |
34 | Song Yang | Postdoc | 2001-2009 | Peking University UC San Diego | Ph.D. | Evolution Studied Through Protein Structural Domain | Post Doc, LBL |
35 | Douglas Greer | Postdoc | 2002-2003 | UC San Diego | Ph.D. | Object-based Tools for Protein Structure Analysis | President, General Manifolds LLC |
36 | Charlie Allerston | Predoc | 2003-2004 | York University | M.S. | Structure genomics analysis | Scientist, Oxford University |
37 | Ward Fleri | Manager | 2003-2006 | Brown University | Ph.D. | Manage PDB project | Manager, LIAI |
38 | Dimitry Pekurovsky | Programmer | 2003-2004 | M.S. | Parallel program development | Programmer Analyst, UCSD/SDSC | |
39 | Vicente Reyes | Postdoc | 2002-2006 | California Institute Of Technology | Ph.D. | Active Site Prediction | Postdoctoral Scholar UC San Diego |
40 | Tammy Battistuz | Artist | 2002-2005 | B.A. | Website design | Web developer, Union Tribune | |
41 | Paul Craig | Sabattical | 2002 | Rochester IT | Ph.D. | Macromolecular visualization | Prof. RIT |
42 | Ayelet Starr | Predoc | 2003-2006 | UC San Diego Bioengineering | M.S. | Further exploration of the Human Kinome | Unknown |
43 | Charlie Knezevich | Systems Manager | 2003-2006 | UCSD | B.S. | Systems Administration | Unknown |
44 | Nita Deshpande | Postdoc | 2004-2006 | UT Austin | Ph.D. | Protein database developer | Senior Developer, Prescientsoft |
45 | Robert Byrnes | Postdoc | 2004-2005 | Ph.D. | Encyclopedia of Life project | ||
46 | Kenneth Addess | Postdoc | 2005-2007 | UC Los Angeles | Ph.D. | protein sequence-structure relationships | Senior programmer, NCBI |
47 | Ruben Valas | Predoc | 2006-2010 | Carnegie Mellon Univ. | B.S. | Evolution of Bacterial Proteasomes | Emerald Therapeutics as a Molecular Engineer |
48 | Jian Wang | Predoc | 2008-Present | UC Berkeley | B.S. | Analysis of Protein Functional Site to Predict Drug off-Targets | Graduate Student, NIH |
49 | Ann Kuller | PreDoc | 1999-2002 | Lion Biosciences | M.S. | BioSync - A Web resource for the synchrotron community | Prometheus |
50 | Chittibabu Guda | Postdoc | 2000-2006 | ANGR Agricultural University, India | Ph.D. | Multiple structure comparison an dalignment | Asst. Prof. Uni of Albany |
51 | John Moreland | Programmer | 2001-2007 | San Diego State Uni | M.S. | Visualization tools | Senior Analyst San Diego Supercomputer Center |
52 | Jeff Merino Ott | PreDoc | 2002 - 2007 | California Polytechnic | B.S. | Redesign of the RCSB PDB | TaylorMade-addidas Golf |
53 | Wayne Townsend-Merino | PreDoc | 2002 - 2009 | SDSU | M.S. | Redesign of the RCSB PDB | LBL |
54 | Stella Veretnik | PostDoc/ Senior Scientist | 2002-2010; 2015- | Ph.D. | Protein sequence structure function | NIH | |
55 | Shawn Strande | Manager | 2002-2005 | SDSU | B.S. | project Manager | Tean Leader, SDSC |
56 | Eliot Clingman | Programmer | 2002-2005 | U. Penn | B.A. | Developer of PDB | Audit Integrity Inc |
57 | David Stoner | Programmer | 2002-2006 | UCSD | B.S. | Developer of PDB | Deseased |
58 | P. Guda | Postdoc | 2003-2005 | Ph.D. | Voltage gated channel proteins | ||
59 | Werner Krebs | Postdoc | 2003-2004 | Yale University | Ph.D. | Protein Structure Comparison and Analysis | Financial Consultant |
60 | Yuting Jia | Postdoc | 2003-2005 | Ph.D. | Scoring Functions | Unknown | |
61 | Kenneth Addess | Postdoc | 2003 - 2005 | Univ of CA, Los Angeles | Ph.D. | Sequence-structure analysis | Scientist, NCBI, NLM |
62 | Quian Ye Zhang | PostDoc | 2005-2007 | Ph.D. | Visualization programmer | ||
63 | John Beaver | PreDoc | 2005 - 2007 | Univ of CA, San Diego | B.S. | The Molecular Biology Toolkit | Harvard |
64 | Lei Xie | Senior Sci | 2005-2011 | Rutgers Univ. | Ph.D. | Proten drug interactions | Assoc Prof CUNY |
65 | Jeff Milton | PreDoc | 2005 - 2007 | Carnegie Mellon Univ. | B.S. | Educational Services for the RCSB PDB | Genentech |
66 | Joe Mulvany | PreDoc | Summer 2004 | Univ of York, UK | B.S. | Sequence-structure Analysis | UCSF |
67 | Noah Ollikainen | Undergrad | 2006 | UCSD | Comparative docking | Graduate student, UCSF | |
68 | Daniel Goodman | Undergrad | 2006 | UCSD | Comparative docking | Graduate Student MIT | |
69 | Cathy Chang | Undergrad | 2006 | UCSD | Protein modeling | ||
70 | Lynn Fink | PostDoc | 2006-2010 | UCSD | Ph.D. | Scholarly communication | Senior scientist, Uni of Queensland |
71 | Zhanyang Zhu | PreDoc | 2006 - 2010 | Birkbeck College | Ph.D. | Epitope prediction | Group Leader, Sequenon |
72 | Tim Beck | PreDoc | 2005-2007 | UCSD | B.S. | PDB systems admin and software development | Electrical Engineer, ViaSat |
73 | Tim Holland | PreDoc | 2005-2007 | UCSD | B.S. | Protein domain analysis | |
74 | Manuel Corpus | Predoc | 2007 | Uni of Manchester | Ph.D. | Structural genomics | Consultant EBI |
75 | Chris Dupont | PreDoc | 2005-2009 | UCSD | Ph.D. | Evolutionary geochemistry | Group Lead, JCVI |
76 | Bojan Beran | PreDoc | 2006-2011 | UCSD | B.S. | Sys Adm and Graphic Designer | Lead Web Developer, Kit Digital |
77 | Haley Hunter-Zinck | Undergrad | 2008 | UCSD | Off-target drug effects | ||
78 | Kingston Fung | Undergrad | 2008-2010 | UCSD | Various programming tasks around the PDB | ||
79 | Maria Kontoyianni | PostDoc | 2008 | UNC | Ph.D. | Protein-ligand interactions | Asst. Prof., Southern IL Univ. Edwardsville |
80 | Charlotte Anderson | PreDoc | Summer 2008 | Univ of York, UK | M.S. | Domain Rearrangements from Protein Structure | Unknown |
81 | Scott Lindsay | PostDoc | Summer 2008 | Univ of York, UK | M.S. | Study of Nucleosome Structure | Unknown |
82 | Thomas Evangelidis | PreDoc | Summer 2008 | Univ of York, UK | M.S. | Competitive Binding of Major Pharmaceuticals | U of Athens |
83 | Li Xie | PostDoc | 2009- | Uni of Sci & Technology, China | Ph.D. | Molecular dynamics | Current Postdoc |
84 | Parker Williams | PreDoc | 2008-2009 | UCSD | B.S. | Sematic Mark-up, XML Formatting, Submission of Scholarly Articles | Unknown |
85 | Ben Yukich | PreDoc | 2009-2011 | UCSD | B.S. | Sys Adm | Developer, Service-now.com |
86 | Natalie Dawson | PreDoc | Summer 2009 | Univ of York, UK | M.S. | Evolution of Domain Associations in tRNS Synthetases | Unknown |
87 | Kieran Alden | PreDoc | Summer 2009 & 2012 | Univ of York, UK | M.S. | Building a meta-method to examine proteins | Postdoc Birmingham University |
88 | Qian Yi Zhang | PreDoc | Summer 2009 | Univ of York, UK | M.S. | Physical Model of Nucleasome Organization Towards Genome Annotation | Graduate Student, Univ of Birmingham, UK |
89 | Nikitas Papangelopoulos | PreDoc | Summer 2007 | Univ of York, UK | M.S. | Looking for Correlation between Protein and Gene Structures | SRA III, UCSD |
90 | Sarah Kinnings | PreDoc | Summer 2007 | Univ of York, UK | M.S. | Competitive Binding of Major Pharmaceuticals | Postdoc UCSD |
91 | Philippe Youkhabachie | Scientist | 2007-2014 | UCSD/NLM | Ph.D. | Protein pseudosymmetry | NIH |
92 | Ricky Lazano | Undergrad | 2010 | UCSD | Drug targeting | Graduate student UCSD | |
93 | Roger Chang | PreDoc | 2010-2012 | UCSD | B.S. | Systems Biology & drug discovery | Post Doc Harvard |
94 | Jim Berger | Programmer | 2010 | B.S. | visualization programer | Consultant | |
95 | Crystal Ku | PreDoc | Winter 2010 | UCSD | B.S. | Drugs targeting DNA | Graduate student UCSD |
96 | Allan Wu | PreDoc | Spring 2010 | UCSD | B.S. | Exome sequencing and disease treatment | Graduate student UCSD |
97 | Spencer Bliven | PreDoc | 2010-2015 | UCSD | PhD | Understanding protein fold space | Post Doc Switzerland |
98 | Sarah Kinnings | Postdoc | Summer/Fall 2009 | Univ of Leeds, UK | Ph.D. | Competitive Binding of Major Pharmaceuticals | Graduate Student, Univ of Leeds, UK |
99 | Satnam Surae | PreDoc | Summer 2010 | Univ of York, UK | M.S. | Repositioning existing drugs for the treatment of diseases associated with P. aeruginosa | Graduate Student, Conway Institute, Ireland |
100 | Kunal Dhir | PreDoc | Summer 2011 | Univ of York, UK | M.S. | Protein structure visualization | "Internal critic" for an education training company in India known as Top careers and You (www.tcyonline.com |