ncov-R0

	A	B	C	D	E	F	G	H	I	J	K	L	M	N
1	study	latest_date	R0	R0_lower	R0_upper	interval_type	url	approach	data_considered	latest_data_date	data_included	code_included	reproducible	notes
2	imai2020	2020-01-25	2.6	1.5	3.5	uncertainty	https://www.imperial.ac.uk/media/imperial-college/medicine/sph/ide/gida-fellowships/Imperial-2019-nCoV-transmissibility.pdf	branching process, NB offspring	point estimate of 4000 infected	2020-01-18	y	n	n	generation distribution not specified
3	riou2020	2020-01-24	2.2	1.4	3.8	hpd	https://www.eurosurveillance.org/content/10.2807/1560-7917.ES.2020.25.4.2000058	branching process, NB offspring, gamma generation time	range of 1000-9700 infected	2020-01-18	y	y	y	uses HPC and hard-coded paths, but could be reproduced locally
4	bedford2020	2020-01-25	N/A	1.5	3.5	uncertainty	https://nextstrain.org/narratives/ncov/sit-rep/2020-01-25?n=11	simple branching process	range of 600-15000 infected	2020-01-25	y	y	y	https://github.com/nextstrain/ncov/blob/master/scripts/branching_process.py
5	read2020	2020-01-27	3.1	2.4	4.1	95% confidence interval	https://www.medrxiv.org/content/10.1101/2020.01.23.20018549v2	deterministic metapopulation SEIR transmission model	spatiotemporal counts, transport data	2020-01-22	y/n	y	y/n	uses proprietary air travel data; preprint not updated to reflect new data
6	liu2020	2020-01-26	2.9	2.3	3.6	95% confidence interval	https://www.biorxiv.org/content/10.1101/2020.01.25.919787v1	regression	cumulative cases	2020-01-23	y/n	n	n	data can be extracted from figure; also used Wallinga-Teunis method?
7	zhao2020	2020-01-24	3.3	2.7	4	95% confidence interval	https://www.biorxiv.org/content/10.1101/2020.01.23.916395v1	regression	cumulative cases	2020-01-22	n	n	n
8	majumder2020	2020-01-26	N/A	2	3.1	uncertainty	https://papers.ssrn.com/sol3/papers.cfm?abstract_id=3524675	regression (IDEA model)	cumulative cases	2020-01-26	n	n	n
9	kucharski2020	2020-01-29	N/A	1.5	4	time-varying	https://cmmid.github.io/ncov/wuhan_early_dynamics/index.html	stochastic SEIR fitted by sequential Monte Carlo	multiple datasets of daily incidence/exports	2020-01-28	y	y	y
10	li2020	2020-01-29	2.2	1.4	3.9	95% confidence interval	https://www.nejm.org/doi/full/10.1056/NEJMoa2001316	renewal equation	date of onset between 2019-12-10 and 2020-01-04	2020-01-04	n	n	n
11	abbott2020	2020-01-30		2	2.7	90% credible interval	https://zenodo.org/record/3631830#.XjNFS7-nwnc	branching process, NB offspring, gamma generation time	within 5% number of observed cases on 2020-01-25	2020-01-25	y	y	y	also uses Docker/Binder for reproducibility
12	wu2020	2020-01-31	2.7	2.5	2.9	95% credible interval	https://www.thelancet.com/journals/lancet/article/PIIS0140-6736(20)30260-9/fulltext	deterministic metapopulation SEIR transmission model	spatiotemporal counts, transport data	2020-01-25	n	n	n	uses proprietary air and land travel data
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100