Proteomic Schedule - 2017 (1).xlsx
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Proteomics 2017 Aug. 7 - 11
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August 7th
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Monday
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TimeTopicSpeakerRoom
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7:30 - 8:00Check-in & WelcomeMarianne Hunter, UCD Biotechnology ProgramGBSF - 1005
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8:00 - 9:30Introduction to ProteomicsDr. Brett Phinney, UCD Genome Center Proteomics CoreGBSF - 1005
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9:30 - 10:00Intro to Todays LabMichelle Salemi , UCD Genome Center Proteomics CoreGBSF -1402
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10:00 - 10:15BreakSponsored by RaininGBSF - 1005
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10:15 - 12:00In-gel and In Solution Digestion Bovine LiverMichelle Salemi & Dr. Anthony Herren, UCD Genome Center Proteomics CoreGBSF -1402
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Lunch
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1:00 - 2:45Bovine Liver Protein Extraction, Protein BCA Quantification, and PrecipitationMichelle Salemi & Dr. Anthony Herren, UCD Genome Center Proteomics CoreGBSF -1402
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2:45 - 3:00BreakSponsored by Thermo Fisher ScientificGBSF - 1005
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3:00 - 4:00Bovine Liver Protein Extraction, Protein BCA Quantification, and PrecipitationMichelle Salemi & Dr. Anthony Herren, UCD Genome Center Proteomics CoreGBSF -1402
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4:00 - 5:00Intro to Mass SpectrometryDr. Brett Phinney, UCD Genome Center Proteomics CoreGBSF - 1005
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5:15Adjourn
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My Proteomic Notes:
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LectureLab
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Proteomics 2017 Aug. 7 - 11
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August 8th
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Tuesday
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TimeTopicSpeakerRoom
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8:00 - 9:45In-gel Digestion Extraction. In solution Digestion Clean Up.Michelle Salemi & Dr. Anthony Herren, UCD Genome Center Proteomics CoreGBSF -1402
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9:45 - 10:00BreakSponsored by Proteome SoftwareGBSF - 1005
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10:00 - 11:00Finish up In Solution Digestions. SPE CleanupMichelle Salemi & Dr. Anthony Herren, UCD Genome Center Proteomics CoreGBSF -1402
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11:00 - 12:00Practical Applications of Protein and Peptide HPLC for ProteomicsKerry Nugent, President, WarpLCMSGBSF - 1005
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Lunch
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1:00 - 2:00Mass Spectrometry and Higher Order Protein Structure: Focus on Disulfide MappingDr. David Arnott, Sr. Scientist, Protein Chemistry Dept., Genentech Inc.GBSF - 1005
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2:00 - 3:00Separations Lab /Break groups alternateKerry Nugent, President, WarpLCMSGBSF -1402
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3:00 - 3:15BreakSponsored by Thermo Fisher ScientificGBSF - 1005
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3:15 - 4:15Fragmentation Techniques in ProteomicsDr. Chris Adams, Director-Proteomics, Stanford University Mass SpectrometryGBSF - 1005
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4:15 - 5:00Phospho enrichmentDr. Anthony Herren, UCD Genome Center Proteomics Core UCD Proteomics Core StaffGBSF -1402
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5:00Adjourn
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My Proteomic Notes:
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LectureLab
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Proteomics 2017 Aug. 7 - 11
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August 9th
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Wednesday
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TimeTopicSpeakerRoom
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8:00 - 9:00Introduction to Protein IDDr. Brett Phinney, UCD Genome Center Proteomics CoreGBSF - 1005
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9:00 - 10:00Protein profiling in corneocytes of hair, nail and epidermisDr. Robert Rice, UC Davis Environmental Toxicology
GBSF - 1005
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10:00-10:15BreakGBSF - 1005
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10:15-11:15Using proteomics to crack open a complex diseaseDr. Maryam Afkarian, M.D., Ph.D., Associate Professor, Dept. of Internal Medicine, UC Davis Medical GroupGBSF - 1005
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11:15-12:15The Highs and Lows in Proteomic AnalysisDr. Dave Quilici, Director, Mick Hitchcock Nevada Proteomics CenterGBSF - 1005
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Lunch
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1:15-2:00Looking at and Converting Raw DataDr. Brett Phinney, UCD Genome Center Proteomics CoreSLB - 2060
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2:00 - 3:00Protein Identification Lab X! TandemDr. Brett Phinney, UCD Genome Center Proteomics CoreSLB - 2060
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3:00 - 3:15BreakSponsored by Thermo Fisher ScientificSLB - 2064
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3:15 - 4:15Quantification Strategies for Proteins containing Posttranslational Modifications – different workflow strategies using data-independent acquisitions, DIA.Dr. Birgit Schilling, Research Associate Professor & the Director of the Mass Spectrometry & Chemistry Core at Buck Institute for Research on AgingSLB - 2020
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4:15 - 5:15Data AnalysisDr. Brett Phinney, UCD Genome Center Proteomics CoreSLB - 2060
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5:15Adjourn
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My Proteomic Notes:
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LectureLab
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Proteomics 2017 Aug. 7 - 11
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August 10th
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Thursday
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TimeTopicSpeakerRoom
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8:00 - 9:45Protein ID and Spectral Counting ExerciseDr. Brett Phinney, UCD Genome Center Proteomics CoreSLB - 2060
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9:45 - 10:00BreakSLB - 2064
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10:00 - 11:00Introduction to Protein Quantitation and Advanced quantitation topicsDr. Brett Phinney, UCD Genome Center Proteomics CoreSLB - 2060
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11:00 - 12:00InformaticsDr. Ryan Leib, Staff Scientist- Protein Bioinformatics, Stanford University Mass SpectrometrySLB - 2020
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Lunch
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1:00 - 2:00Statistical Concepts Relevant to Proteomics Data AnalysisDr. Blythe Durbin-Johnson, UC Davis Principal StatisticianSLB - 2060
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2:00- 3:00Data Analysis LabSLB - 2020
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3:00-3:15BreakSponsored by Thermo Fisher ScientificSLB - 2064
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3:15-5:00De novo SequencingMichelle Salemi, UC Davis Genome Center Proteomics CoreSLB - 2060
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5:00Adjourn
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My Proteomic Notes:
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LectureLab
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Proteomics 2017 Aug. 7 - 11
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August 11th
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Friday
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TimeTopicSpeakerRoom
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8:00-9:00Data AnalysisDr. Brett Phinney, UCD Genome Center Proteomics CoreSLB - 2060
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9:00-10:00GlycoproteomicsDr. Marshall Bern, Research Director, Protein MetricsSLB - 2060
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10:00-10:15BreakSLB - 2064
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10:15-12:00Enrichment and analysis of PTMsDr. Anthony Herren, UCD Genome Center Proteomics CoreSLB - 2060
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Lunch
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1:00-2:00PresentationDr. Glendon Parker, Associate Research Scientist, UC Davis Dept. of Environmental Toxicology & Founder and CEO, Protein-Based Identification Technologies LLCSLB - 2060
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2:00-2:45De novo Quiz Results and QuestionsMichelle Salemi, UC Davis Genome Center Proteomics CoreSLB - 2060
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2:45-3:00BreakSponsored by Thermo Fisher ScientificSLB - 2064
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3:00-4:00Data Analysis Wrap up in Computer LabDr. Brett Phinney, UCD Genome Center Proteomics CoreSLB - 2060
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