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propertySchema.org propertyDescription of PropertiesType (schema.org)Content guidelineCardinalityExample 1Example 2Example 3
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namehttps://schema.org/nameShort name of the sampleTEXTMandatory1BLACK CHERRYPlasma
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descriptionhttps://meta.schema.org/descriptionDescription of sampleTEXTMandatory1Black Cherry Tomato features strikingly-dark fruit with sweet, dynamic flavor. It's perfect for snacking, salads, or shish kebabs. Find out more here.1 human blood metagenome samples
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identifier/accession
look a new release for 'Identifier', make sure there are attributes to formalize how identifiers should be reported. (link to identifiers.org) + Discussion about various type of identifiers such as private one or anonymized ones from Biobank
Unique identifier / accession for sample in this repository TEXTMandatory1EA00027SAMN04211369
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urlhttps://meta.schema.org/urlAccess url for this sampleTEXTMandatory1https://www.eu-sol.wur.nl/passport/SelectAccessionByAccessionID.do?accessionID=EA00027https://www.ebi.ac.uk/biosamples/samples/SAMN04211369
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alternateIdentifier / seeAlso?
May not be required if cardinality of identifier can be >1
List of alternate identifiers/accessions for this sample in other repositoriesTEXTOptionalMV710092
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additional typehttps://schema.org/additionalTypean element to refine the characterisation of the material, only to be used after type has been filled inURIOptionalM
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taxonomyNCBI taxonomy (https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Root)URIOptional1Solanum lycopersicumBrassica Oleracea
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organisation/providerhttps://schema.org/providerMColor panel, Infinium 200 core collection, Inflorescence panel, WUR Re-Seq project
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access right /availability
Term Request: (license / copyright (https://schema.org/copyrightHolder) applies only to creative works) Test against Data Use Ontology use cases as defined by GA4GH or FAO MCPD plant passport)
condition of access, restriction of use if anyTEXTOptionalMCPD
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disease
https://schema.org/PropertyValueSpecification
a controlled term to denote medical condition or disorderURIOptionalinfluenza
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phenotype
https://schema.org/PropertyValueSpecification
List of key:value (with descriptions or terms) refered to the observable physical properties of an organismTEXTOptionalMtrait: shoot percent dry weight; method: calculated by dividing the shoot fresh weight by the shoot dry weight and multiplying the result by 100. after fresh and dry weights have been measured. calculated in a laboratory. calculator or speadsheet; scale: percent
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genotype
https://schema.org/PropertyValueSpecification
dataset?Optionalgene X knock-out
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exposure
https://schema.org/PropertyValueSpecification
Optionaldraught
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locationhttps://schema.org/GeoCoordinates
https://schema.org/GeoCoordinates
Optional1latitude: 52.2083, longitude: -1.6108
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typeType of sample from controlled vocabulary/ontologyURIOptional1Whole plantHuman blood
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datedate of extraction? or study date? both (cardinality: m)?
https://schema.org/Date
Optional
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terminology term
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MedicalCodehttps://health-lifesci.schema.org/codeREQUEST FROM BIOSCHEMA: provide a generic mechanism for any vocabulary / code to be referenceable -> TerminologyCode to supercede MedicalCode or become a parent class for it
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property of medicalCodehttps://health-lifesci.schema.org/codeValue
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property of medicalCode
https://health-lifesci.schema.org/codingSystem
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Sheet1
Day 1