ABCDEFGHIJKLMNOPQRSTUVWX
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In House
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Shape 1Shape 2Shape 3Shape 4Shape 5Shape 6
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Dataset NameSourceLocation# of imagesName Format#Name Format#Name Format#Name Format#Name Format#Name Format#Notes
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Atria (LA-RA-S)/usr/sci/datanew/SSM-Data/In-House/Atria/31Left Artium.nrrd31Right Atrium.nrrd31Septum.nrrd31---------
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Right Ventricle - NormalAshley
/usr/sci/datanew/SSM-Data/In-House/Right_Ventricle/
32Right Ventricle .nrrd32---------------
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Right Ventricle - PathologyAshley
/usr/sci/datanew/SSM-Data/In-House/Right_Ventricle/
22Right Ventricle .nrrd22---------------
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Biventricle - NormalBrian/usr/sci/datanew/SSM-Data/In-House/Biventricle/6Epi.nrrd6LV-Endo.nrrd6LV-Wall.nrrd6RV-Endo.nrrd6RV-Wall.nrrd6Wall.nrrd6
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Biventricle - PathologyBrian/usr/sci/datanew/SSM-Data/In-House/Biventricle/25Epi.nrrd25LV-Endo.nrrd25LV-Wall.nrrd25RV-Endo.nrrd25RV-Wall.nrrd25Wall.nrrd25
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Left Atrium (LA)Andie
/usr/sci/datanew/SSM-Data/In-House/Left_Atrium/LA Script
448Left Artium.nrrd448--------------
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Left Atrium Appendage (LAA)Alan
/usr/sci/datanew/SSM-Data/In-House/LA_Appendage/
243LAA.nrrd243Shrinkwrap LA.nrrd243------------
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AnkleAmy/usr/sci/datanew/SSM-Data/In-House/Ankle/27Calcaneous.ply27Cuboid.ply27Navicular.ply27Talus.ply27------
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Shoulder - NormalHeath/usr/sci/datanew/SSM-Data/In-House/Shoulder/104Scapula.nrrd104Humerus.nrrd94------------
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Shoulder - PathologicalHeath/usr/sci/datanew/SSM-Data/In-House/Shoulder/132Scapula.nrrd132Humerus.nrrd122------------
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HipAndy/usr/sci/datanew/SSM-Data/In-House/Hip/219Pelvis cortical .vtk225Femur cortical.vtk262
Pelvis trabecular
.vtk30Femur trabecular.vtk30
Femur with thickness
.vtk72Sacrum .vtk52
Total counts: 'fcart.vtk': 23, 'femur.vtk': 262, 'femur_trabec.vtk': 30, 'femur_w_thick.vtk': 72, 'labrum.vtk': 8, 'pcart.vtk': 8, 'pcart_labrum.vtk': 26, 'pelvis.vtk': 225, 'pelvis_and_labrum.vtk': 5, 'pelvis_trabec.vtk': 30, 'sacrum.vtk': 51, 'sacrum_solo.vtk': 50
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Public
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Shape 1Shape 2Shape 3Shape 4Shape 5Shape 6
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Dataset NameSourceLocation# of imagesName Format#Name Format#Name Format#Name Format#Name Format#Name Format#Notes
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Prostate MRI
https://central.xnat.org/app/template/XDATScreen_report_xnat_projectData.vm/search_element/xnat:%20projectData/search_field/xnat:projectData.ID/search_value/NCIGT_PROSTATE
/usr/sci/datanew/SSM-Data/Public_Data/Prostate_MRI/
9Prostate.nrrd9
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CARMA
https://www.insight-journal.org/midas/collection/view/197
/usr/sci/datanew/SSM-Data/Public_Data/CARMA_Longitudinal_Left_Atrium/
155LA endo.nrrd155LA endo no veins.nrrd155LA wall.nrrd155---------
60 unique patients - pre and post
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Nucleus
https://murphylab.web.cmu.edu/software/2015_MBoC_Cell_And_Nuclear_Shape/
/usr/sci/datanew/SSM-Data/Public_Data/HeLa_Cell/182DNA.nrrd182---------------
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OAI Kneehttps://oai.epi-ucsf.org/datarelease//usr/sci/datanew/SSM-Data/Public_Data/OAI_Knee/140---------
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MSD Hearthttp://medicaldecathlon.com/index.html
/usr/sci/datanew/SSM-Data/Public_Data/Med_Seg_Decathlon_Task02_Heart/
30Left Atrium.nrrd20- --------------
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MSD Hippocampushttp://medicaldecathlon.com/index.html
/usr/sci/datanew/SSM-Data/Public_Data/Med_Seg_Decathlon_Task04_Hippocampus/
390Hippocampus.nrrd269- --------------
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MSD Prostate http://medicaldecathlon.com/index.html
/usr/sci/datanew/SSM-Data/Public_Data/Med_Seg_Decathlon_Task05_Prostate/
48Prostate.nrrd32- --------------
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MSD Spleenhttp://medicaldecathlon.com/index.html
/usr/sci/datanew/SSM-Data/Public_Data/Med_Seg_Decathlon_Task09_Spleen/
61Spleen.nrrd41
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Stanford Knee
https://stanfordaimi.azurewebsites.net/datasets/4aaeafb9-c6e6-4e3c-9188-3aaaf0e0a9e7
/usr/sci/datanew/SSM-Data/Public_Data/Stanford_Knee_MRNetData/
155
femoral_cartilage
.nrrd155meniscus_lateral.nrrd155
meniscus_medial
.nrrd155patellar_cartilage.nrrd155
tibial_cartilage_lateral
.nrrd155
tibial_cartilage_medial
.nrrd155
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TotalSegmentator
https://github.com/wasserth/TotalSegmentator
/usr/sci/datanew/SSM-Data/Public_Data/Totalsegmentator_dataset/
1204
There are 104 different shapes all in .nrrd format, for counts of each shape see /usr/sci/datanew/SSM-Data/Public_Data/Totalsegmentator_dataset/all_shape_counts.json
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