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ID Epi Meetings: Fridays 2:30-3:30pm
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WeekPresenterChairArchetypeTopicNotesGone
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1/16/2026​
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1/23/2026VioletLizaTalkEfficient SamplingDan
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1/30/2026DanVioletTalkNetworks and P. falciparum's var genesLiza
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2/6/2026MaiaLizaJournal Club / Briefing
Disruption of outdoor activities caused by wildfire smoke shapes circulation of respiratory pathogens
link: https://journals.plos.org/climate/article?id=10.1371/journal.pclm.0000542
Dan Remy
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2/13/2026LizaMaiaTalkMeasles stat modelling OR TB modelling
Liza in Boulder!
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2/20/2026TylerLizaGuest Speaker
Amir Mohareb - research-in-progress on predicted impacts of recent changes to HBV vaccination recommendations
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2/27/2026CaseyTylerTalk“What the heck is VE” — talk on some work in progress
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3/6/2026RemyTalkTreeScan
Maia, Casey
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3/13/2026TylerRemy​
Integrating spatial, mobility, and genomic data for infectious disease epi
Casey, Liza
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3/20/2026SPRING BREAK​
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3/27/2026​
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4/3/2026NicoleViolet​Nursing Home Viral Kinetics Data
Violet, Liza (UK public holiday)
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4/10/2026Dan​Practice Talk
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4/17/2026Apurva NarechaniaTyler​
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4/24/2026VioletMaia​
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5/1/2026TylerLiza​
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TopicsModel Fitting
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Journal club for Slack papers
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ABC
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New VL Kinetics model
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Trees
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LInking VL to Sx & Severity
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Time series methods
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Linsey Marr
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Esther Rolf
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Open PK Commons
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Goals
SK: Open PK Commons Beta
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VR: Acquainted with epi, models, team
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GG: Data for main figs of paper; sequence analysis; population genetics
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RP: Bring to-be-orphaned code to deployment
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ED: OPKC progress with improved incremental measurement of progress
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DL: Submit worst-case pandemics
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BA-S: Identify a research question
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LH: Canada Measles paper submitted
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SK: New VK modeling approach (Dylan Morris)
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Brainstorm list
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APPEX brainstorm
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Fungi
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Intro to immune system
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List of people to invite to give talks
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Ellen wild brainstorm idea: what is optimal ID world? where we never pass on infections, or we control which and when we pass them on? also Dan utility model idea
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https://www.nature.com/articles/s41467-024-45400-1
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Guest AMA: Marie-Laure Charpignon (causal inference, epi modeling, public health equity) - Ellen working on rescheduling
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Tutorial on gillespie
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