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ID Epi Meetings: Fridays 12:00-1:00pm
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WeekPresenterChairArchetypeTopicNotesGone
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8/28/26Dan & StephenBrainstormSome Fall 2026 Research Ideas
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9/4/26StephenDanJournal Club / BriefingBranching Processes
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9/11/26DanDiscussionEditorial discussion
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9/18/26​
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9/25/26David Helekal, HSPHDanTalk
Bayesian adaptive experimental design for efficient microbial genome-wide association studies
Liza, Lucy, Casey
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10/2/26LizaBrainstormTB modeling (and some Dengue if we have time)Stephen
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10/9/26Ben​
Liza, Dan, Gabi (host path)
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10/16/26Violet​optimal immunization and influence maximization
Liza, Gabi (experiment)
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10/23/26Tyler & DanBrainstormBVSD Networks
Gabi (conference)
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10/30/26Lucy​
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11/6/26Kendra GilbertsonCasey​Modeling infectious diseases in non-human systems
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11/13/26Remy​Should have a new paper draft on COVID antivirals by then
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11/20/26Tyler​
Estimating transmission heterogeneity using MTB WGS data: missingness, bias, & model selection
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11/27/26🦃​
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12/4/26Maia​
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TopicsModel FittingBurstiness / follow-ons?
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Journal club for Slack papers
History of modeling (Liza)
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ABC(Anybody from Yonatan's group?)
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New VL Kinetics modelTyler: tension between clinical medicine and& public health goals
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Trees
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LInking VL to Sx & Severity
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Time series methods
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Linsey Marr
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Esther Rolf
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Open PK Commons
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Goals
SK: Open PK Commons Beta
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VR: Acquainted with epi, models, team
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GG: Data for main figs of paper; sequence analysis; population genetics
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RP: Bring to-be-orphaned code to deployment
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ED: OPKC progress with improved incremental measurement of progress
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DL: Submit worst-case pandemics
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BA-S: Identify a research question
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LH: Canada Measles paper submitted
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SK: New VK modeling approach (Dylan Morris)
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Brainstorm list
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APPEX brainstorm
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Fungi
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Intro to immune system
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List of people to invite to give talks
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Ellen wild brainstorm idea: what is optimal ID world? where we never pass on infections, or we control which and when we pass them on? also Dan utility model idea
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https://www.nature.com/articles/s41467-024-45400-1
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Guest AMA: Marie-Laure Charpignon (causal inference, epi modeling, public health equity) - Ellen working on rescheduling
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Tutorial on gillespie
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