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CoFest 2019 Attendees List
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CoFest web page
https://www.open-bio.org/events/bosc/collaborationfest/
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Gitter chat roomhttps://gitter.im/chapmanb/obf-codefest
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Add your project ideas
https://docs.google.com/document/d/1UaScEaOchWPCTdBei8PLCIcKLEqVdhDimOj4zFydhnk/edit?usp=sharing
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BOSC/ISMB registration is separate (not free)
https://www.iscb.org/ismbeccb2019-registration
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CoFest registration is free (just add your name to this spreadsheet)
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List yourself as "remote only" if you want to participate but cannot make it to Basel. We are glad to have you.
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If in person, please indicate which days you need lunch, and dietary requirements in the relevant columns
Friday lunch count:
Saturday Lunch count:
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3833
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NameAffiliationURLemailRemote only?
Friday Lunch (0/1)
Saturday Lunch (0/1)
Goals
Special dietary requirements (eg vegetarian; no dairy)
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Michael HeuerUC Berkeleyhttps://github.com/heuermhheuermh@gmail.comNo11Helping organising CoFest; Apache Spark + ADAM + Disq + Cannoli + Nextflow ?
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Alexander PeltzerQuantitative Biology Center (QBiC), University of Tübingenhttps://github.com/apeltzeralex.peltzer@gmail.comNo00Helping organising CoFest; Nextflow + nf-coreNo
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Peter CockJames Hutton Institutehttps://github.com/peterjc/p.j.a.cock@googlemail.comNo11Helping organising CoFest; BiopythonNo
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Paul WolfeHartwig Medical Foundationhttps://github.com/hartwigmedical/paul@paulwolfeconsulting.comYes00ADAMN/A
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João Rodrigues Stanford University School of Medicine https://github.com/JoaoRodrigues j.p.g.l.m.rodrigues@gmail.comNo11Biopython?
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Michael R. CrusoeCommon Workflow Language projecthttps://github.com/mr-cmrc@commonwl.orgNo11CWL everywhere!Vegan
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Joe GreenerUniversity College London/Francis Crick Institutehttps://github.com/jgreener64j.greener@ucl.ac.ukNo11BioJulia, BiopythonNo
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Ryan WilliamsMount Sinai School of Medicinehttps://github.com/ryan-williamsryan.blake.williams@gmail.comNo11Single-cell, zarr, spark?
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Sven FillingerQuantitative Biology Center (QBiC), University of Tübingenhttps://github.com/sven1103sven.fillinger@gmail.comNo11Nextflow and nf-core?
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Nishant JhaIndependenthttps://github.com/ninjha01/ninjha01@gmail.comYes00BiopythonN/A
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Harshil PatelFrancis Crick Institutehttps://github.com/drpatelhharshil.patel@crick.ac.ukNo11Nextflow + nf-core?
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Emmy TsangeLifehttps://github.com/emmyfte.tsang@elifesciences.orgNo11pescatarian
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Kaushik GhoseSeven Bridgeshttps://github.com/kaushik-workkaushik.ghose@sevenbridges.comNo11No
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Yo YehudiUniversity of Cambridgehttp://github.com/yochannahyo@intermine.orgNo11BioJS and/or Galaxy+InterMine integrationVegan
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Paolo Di TommasoCentre for Genomics Regulation / Seqera Labs / Nextflowhttps://github.com/pditommasopaolo.ditommaso@gmail.comNo11Nextflow; containers; workflows; GA4GH; nf-core ?
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Geraldine Van der AuweraBroad Institute https://github.com/vdauwerageraldine@broadinstitute.orgNo11Synthetic genomic data resources?
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Romasa QasimIndependent University, Bangladeshhttps://github.com/Romasaromasa.qasim@iub.edu.bdYes00N/A
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Toby HodgesEuropean Molecular Biology Laboratoryhttps://github.com/tobyhodgestoby.hodges@embl.deNo11Teaching material; Documentation; Whatever I can help with?
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Spencer BlivenPaul Scherrer Institutehttps://github.com/sblivenspencer.bliven@psi.chNo11BioJava, BioPython, MolQL?
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Jessica MaiaBDhttps://github.com/jessMaiajessica.maia@bd.comNo10Vegetarian
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Stian Soiland-ReyesUniversity of Manchester; BioExcel; Common Workflow Language; Research Objecthttps://orcid.org/0000-0001-9842-9718soiland-reyes@manchester.ac.ukNo10CWL, containers, workflows; provenance, research objects, reproducibility, "exascale"?
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Tony Zeyu YangImperial College Londonhttps://github.com/tonyyzyzy2414@ic.ac.ukNo11
Learn from people; newbie contribution; improve CWL's --print-dot https://www.biostars.org/p/366246/
?
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Louise CabansayUC Santa Cruz Genomics Institute, Dockstorehttps://github.com/Ldcabansaylcabansa@ucsc.eduNo11Dockstore, workflows, containers, learn from people?
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Mateusz KuzakDutch Techcentre for Life Sciences, ELIXIR-NLhttps://github.com/mkuzakmateusz.kuzak@gmail.comNo11learn from people, work on software management plans?
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Sonika TyagiMonash University Australiahttps://github.com/tsonikasonika.tyagi@monash.eduNo11?
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Kunaphas KongkitmanonIntegrative Computational Bioscience Center ,Mahidol Universityhttps://github.com/silenus092kunaphas.kon@gmail.comNo11WDL, python, R, data analysis NO
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Peter DiakumisUniversity of Melbourne Centre for Cancer Researchhttps://github.com/pdiakumispeterdiakumis@gmail.comNo11WDL/CWL workflowsNo
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Raony GuimaraesGenomics Medicine Irelandhttps://github.com/raonyguimaraesraonyguimaraes@gmail.comNo11Helping organising CoFest; Nextflow + nf-coreNo
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Hilmar LappDuke University, Center for Genomic and Computational Biologyhttps://github.com/hlapphlapp@drycafe.netNo11OBF organization documentsVegetarian
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Dmitry MeleshkoWeill Cornell Medicinehttps://github.com/1dayacmeleshko.dmitrii@gmail.comYes00N/A
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Harry CaufieldUCLAhttps://github.com/caufieldjhjcaufield@mednet.ucla.eduNo11Data + platform integration workflowsNo
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Joschka-Joseph AndersonOnline courses ( Biochem, AWS & GCP ), AWS PopUp Loft & HackerDoJohttps://github.com/ixythauriboseplexds@gmail.comYes00Bash shell, Python, R help AWS Instances and to learn from..N/A
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Suyash GuptaNational Institute of Technology, Rourkelahttps://github.com/sgalpha01sgalpha01@gmail.comYes00Biopython. Beginner in bioinformatics, want to learn.N/A
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Tazro OhtaDatabase Center for Life Sciencehttps://github.com/inutanoinutano@gmail.comNo10CWL?
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Anton KhodakWellcome Sanger Institutehttps://github.com/anton-khodakak27@sanger.ac.ukNo11Nextflow, containers, Python-based toolsNo
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Richard LupatPeter MacCallum Cancer Centre, Australia
https://github.com/PMCC-BioinformaticsCore
richard.lupat@petermac.orgNo11CWL, WDL, workflowsNo
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Adelaide RhodesBroad Institute of MIT and Harvardhttps://github.com/Arhodes-Broad/arhodes@broadinstitute.orgNo11WDL/CWL testing optionsNo
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Hervé MenagerInstitut Pasteurhttps://github.com/hmenagerherve.menager@gmail.comNo11CWL, EDAM, bio.tools
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Nilson CoimbraUniversidade Federal Minas Gerais
https://www.linkedin.com/in/nilson-da-rocha-coimbra-37469317/
nilson.coimbra@gmail.comNo11No
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Michael AdkinsCoreBiome, University of Minnesotahttps://github.com/madkinsz/madkins@corebiome.comYes00Scaling genomics tooling; workflows; CWL; kubernetes; AWSN/A
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John HawkinsUniversity of Texas at Austinhawkjo.github.iohawkjo@gmail.comNo11Vegetarian
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Andrew WilkeyIowa State Universityhttps://github.com/awilkeyawilkey@iastate.eduNo00
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Mustafa Anil TuncelETH Zurichhttps://github.com/anilbey/tuncel.manil@gmail.comNo11Biopython, Flake8 N/A
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Kevin SayersSIB Swiss Institute of Bioinformaticshttps://github.com/KevinSayerssayerskt@gmail.comNo10NextflowN/A
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Matúš KalašUniversity of Bergen, Norwayhttps://github.com/matuskalasmatus.kalas@uib.noNo11EDAMVegan
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Nitesh TuragaBioconductor Project, USAhttps://github.com/nturaganiteshturaga@roswellpark.orgNo10Learn frrom peopleN/A
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Lee PangAmazon Web Serviceshttps://github.com/wleepangpwyming@amazon.comNo11
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Gordon FleetwoodNAhttps://github.com/gfleetwoodgfleetwood@protonmail.comYes00Looking to help in general but gravitating towards projects involved Spark
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Roshni BiswasDana-Farber Cancer Institutehttps://github.com/roshni-b???
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