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TopicInstructorReadingAssignment DueTraveling
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TJan 10Introduction, Intro. UnixMBHVB ch1-2TH
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RJan 12Intro. UnixMBHVB ch3
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TJan 17Remote Machines/Version ControlTHVB ch4-5MBH
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RJan 19Git and GitHub (BitBucket and GitLab)THVB ch5
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TJan 24Bioinformatics Data/Advanced UnixMBHVB ch6-7TH
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RJan 26Advanced UnixMBHVB ch7TH
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TJan 31Advanced UnixMBHVB ch7DL
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RFeb 2Advanced UnixMBHVB ch7
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TFeb 7RDLVB ch8Unix AssignmentTH
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RFeb 9RDLVB ch8TH
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TFeb 14RDLVB ch8
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RFeb 16RDLVB ch8
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TFeb 21RDLVB ch8
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RFeb 23RDLR Assignment
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TFeb 28PythonTH
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RMar 2PythonTH
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TMar 7PythonTH
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RMar 9PythonTHMBH
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Spring Break - No class
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TMar 21PythonTH
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RMar 23Python (libraries & applications)Adina HoweTH
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TMar 28Data Management Plans/LaTeXTHDL
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RMar 30RangesMBHVB ch9
Python Assignment
DL
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TApr 4RangesDL, MBHVB ch9
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RApr 6Sequence Data / AlignmentsTH
VB ch10-11
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TApr 11HPCLevi Baber
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RApr 13HPCUsha Muppirala
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TApr 18Shell Scripts/PipelinesMBHVB ch12Data/Pipelines/HPC Assignment
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RApr 20Shell Scripts/PipelinesLi WangVB ch12
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TApr 25PresentationGroup Project
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RApr 27Presentation
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Apr 25Tuesday Presentations
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1TBD
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2PEB
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3Elliot Rossow, Ali Kerwin & Joe Webb
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4Emma Miller, Justin Conover, and Ching-Yi Liao
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Apr 27Thursday Presentations
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1RNA-seekers
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2Adaptation is RAD...seq
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3Valerin
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4Echincea
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