#SingleCell #Omics v2.11.0 bit.ly/scellmarket @albertvilella

	A	B	C	D	E	F	G	H
1		Method	Reference	Type	Early Estimate	Late Estimate	Citations	Scholar Link

2		smFISH (on RNA)	https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221	Spatial	1982	1983	2140	Scholar
3		LCM	https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221	Spatial	1996	1997	94	Scholar
4		smFISH (improved protocol)	https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221	Spatial	2007	2008	1560	Scholar
5	,	Tang method	https://www.nature.com/articles/nmeth.1315	Single-cell	2008	2009	1646	Scholar
6		RNAscope	https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221	Spatial	2010	2011	3030	Scholar
7	,	CyTOF	https://www.fluidigm.com/applications/single-cell-advances	Single-cell	2011	2012	4590	Scholar
8	,	STRT-seq / C1	https://doi.org/10.1016%2Fj.celrep.2012.08.003	Single-cell	2011	2012	790	Scholar
9		ISS using padlock probes	https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221	Spatial	2012	2013	5000	Scholar
10		RNA-seq of individual cryosections	https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221	Spatial	2012	2013	3160	Scholar
11	,	SMART-seq	https://doi.org/10.1038%2Fnmeth.2772	Single-cell	2012	2013	2440	Scholar
12		Smart-seq2	https://www.nature.com/articles/nmeth.2639	Single-cell	2012	2013	4580	Scholar
13	,	CEL-seq	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4412462/	Single-cell	2012	2013	1150	Scholar
14	,	PMA / SMA	https://www.pnas.org/content/110/2/594.short	Single-cell	2012	2013	1040	Scholar
15	,	Quartz-Seq	https://genomebiology.biomedcentral.com/articles/10.1186/gb-2013-14-4-r31	Single-cell	2012	2013	333	Scholar
16	,	TIVA	https://www.nature.com/articles/nmeth.2804	Single-cell	2013	2014	1240	Scholar
17	,	scBS-seq	https://www.ncbi.nlm.nih.gov/pubmed/25042786	Single-cell	2013	2014	260	Scholar
18	,	AbPair	http://biorxiv.org/content/10.1101/134841v1	Single-cell	2014	2014	17	Scholar
19		seqFISH	https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221	Spatial	2014	2015	706	Scholar
20	,	MARS-seq	https://doi.org/10.1038%2Fnmeth.2639	Single-cell	2014	2015	597	Scholar
21		FISSEQ	https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221	Spatial	2014	2015	462	Scholar
22	,	FISSEQ	https://www.nature.com/articles/nprot.2014.191	Single-cell	2014	2015	449	Scholar
23		TIVA	https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221	Spatial	2014	2015	430	Scholar
24	,	G&T-Seq	https://www.nature.com/articles/nmeth.3370	Single-cell	2014	2015	368	Scholar
25		tomo-seq	https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221	Spatial	2014	2015	127	Scholar
26	,	DR-seq	http://www.ncbi.nlm.nih.gov/pubmed/25599178	Single-cell	2014	2015	96	Scholar
27	*	sci-ATAC-seq	http://science.sciencemag.org/content/348/6237/910	Single-cell	2014	2015	88	Scholar
28	,	SC3-seq	https://www.ncbi.nlm.nih.gov/pubmed/25722368	Single-cell	2014	2015	76	Scholar
29	*	SCTG	http://www.sciencedirect.com/science/article/pii/S0027510715000044	Single-cell	2014	2015	23	Scholar
30	*	SIDR-seq	http://genome.cshlp.org/content/early/2017/12/05/gr.223263.117.long	Single-cell	2014	2015	12	Scholar
31	,	BAT-seq	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4501847/	Single-cell	2014	2015	12	Scholar
32		scWGBS	https://pubmed.ncbi.nlm.nih.gov/25732828/	Single-cell	2014	2015	100	Scholar
33	*	Drop-Chip	https://www.nature.com/articles/nbt.3383/	Single-cell	2015	2015	95	Scholar
34	*	SUPeR-seq	https://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0706-1	Single-cell	2015	2015	70	Scholar
35	*	scMTseq	https://www.sciencedirect.com/science/article/abs/pii/S157411921500111X	Single-cell	2015	2015	64	Scholar
36	*	Hi-SCL	http://www.ncbi.nlm.nih.gov/pubmed/26000628	Single-cell	2015	2015	55	Scholar
37	*	inDrop	http://www.ncbi.nlm.nih.gov/pubmed/26000487	Single-cell	2015	2016	2730	Scholar
38		MERFISH	https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221	Spatial	2015	2016	812	Scholar
39	*	FRISCR	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4869711/	Single-cell	2015	2016	246	Scholar
40	*	CEL-Seq2 / C1	https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0938-8	Single-cell	2015	2016	242	Scholar
41	*	scTrio-seq	http://www.ncbi.nlm.nih.gov/pubmed/26902283	Single-cell	2015	2016	129	Scholar
42	*	CRISP-seq	http://www.cell.com/cell/abstract/S0092-8674(16)31611-7	Single-cell	2015	2016	115	Scholar
43	*	CytoSeq	http://www.ncbi.nlm.nih.gov/pubmed/25657253	Single-cell	2015	2016	110	Scholar
44	*	scM&T-seq	http://www.ncbi.nlm.nih.gov/pubmed/26752769	Single-cell	2015	2016	105	Scholar
45	*	scGESTALT	https://www.ncbi.nlm.nih.gov/pubmed/29608178	Single-cell	2015	2016	81	Scholar
46	*	PLAYR	https://www.ncbi.nlm.nih.gov/pubmed/26808670	Single-cell	2015	2016	48	Scholar
47	*	CLaP	https://www.ncbi.nlm.nih.gov/pubmed/27198043	Single-cell	2015	2016	27	Scholar
48	*	Darmanis-et-al-2016	https://www.cell.com/cell-reports/pdfExtended/S2211-1247(17)31462-6	Single-cell	2015	2016	26	Scholar
49	*	sc-GEM	https://www.nature.com/articles/nmeth.3961	Single-cell	2015	2016	18	Scholar
50	*	Genshaft-et-al-2016	https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-1045-6	Single-cell	2015	2016	17	Scholar
51		In silico reconstruction using ISH	https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221	Spatial	2015	2016		Scholar
52	*	3'GEX RNAseq @10xgenomics	https://www.10xgenomics.com/single-cell-technology/	Single-cell Commercial	2016	2017	5440	Scholar
53	*	sc Targetted Gene Expression @fluidigm	https://www.fluidigm.com/reagents/single-cell-targeted-gene-expression	Single-cell Commercial	2016	2017	1900	Scholar
54	*	Patch-seq	https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-017-0396-0	Single-cell	2016	2017	436	Scholar
55		Geo-seq	https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221	Spatial	2016	2017	232	Scholar
56	*	CROP-seq	https://www.nature.com/articles/nmeth.4177	Single-cell	2016	2017	203	Scholar
57	*	MATQ-seq	https://www.nature.com/articles/nmeth.4145	Single-cell	2016	2017	109	Scholar
58	*	Geo-seq	https://www.nature.com/articles/nprot.2017.003	Single-cell	2016	2017	107	Scholar
59	*	mcSCRB-seq	https://www.biorxiv.org/content/10.1101/188367v1	Single-cell	2016	2017	86	Scholar
60		NICHE-seq	https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221	Spatial	2016	2017	72	Scholar
61	*	STRT-seq-2i	https://www.nature.com/articles/s41598-017-16546-4	Single-cell	2016	2017	57	Scholar
62	*	scNOMe-seq	https://elifesciences.org/articles/23203	Single-cell	2016	2017	51	Scholar
63	*	SiC-seq	https://www.nature.com/articles/nbt.3880	Single-cell	2016	2017	32	Scholar
64	*	CUT&Run	https://elifesciences.org/articles/21856	Single-cell	2016	2017	28	Scholar
65		seqFISH (smHCR)	https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221	Spatial	2016	2017	19	Scholar
66	*	RNAseq / Gene Expression @nanostringtech	https://www.nanostring.com/scientific-content/technology-overview/ncounter-technology	Single-cell Commercial	2016	2017	4	Scholar
67	*	scTCR Wafergen	https://www.prnewswire.com/news-releases/wafergen-presents-single-cell-t-cell-receptor-sequencing-results-using-the-icell8-single-cell-system-at-the-2016-single-cell-genomics-meeting-300327741.html	Single-cell	2016	2017	0	Scholar
68	*	scCOOL-seq	https://www.nature.com/articles/cr201782	Single-cell	2016	2017	0	Scholar
69		ST	https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221	Spatial	2016	2017	0	Scholar
70		snmC-seq	https://www.science.org/doi/abs/10.1126/science.aan3351	Single-cell	2016	2017	0	Scholar
71		STARmap	https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221	Spatial	2017	2018	2090	Scholar
72	*	CITE-seq	https://www.nature.com/articles/nmeth.4380	Single-cell	2017	2018	773	Scholar
73	*	Seq-Well	https://www.nature.com/articles/nmeth.4179	Single-cell	2017	2018	470	Scholar
74	*	DroNC-Seq	https://europepmc.org/abstract/ppr/ppr27414	Single-cell	2017	2018	423	Scholar
75	*	scATAC @10xgenomics	https://www.10xgenomics.com/solutions/single-cell-atac/	Single-cell Commercial	2017	2018	351	Scholar
76	*	CellTag	https://www.biorxiv.org/content/10.1101/335547v1	Single-cell	2017	2018	269	Scholar
77	*	scNMT triple omics	https://www.biorxiv.org/content/early/2019/01/13/519207	Single-cell	2017	2018	186	Scholar
78	*	sci-RNA-seq	http://science.sciencemag.org/content/357/6352/661	Single-cell	2017	2018	151	Scholar
79		osmFISH	https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221	Spatial	2017	2018	146	Scholar
80	*	scRNA-Seq Dolomite Bio	https://www.dolomite-bio.com/product/nadia-instrument/	Single-cell	2017	2018	83	Scholar
81	*	Quartz-Seq2	https://www.biorxiv.org/content/10.1101/159384v3	Single-cell	2017	2018	70	Scholar
82	*	ScarTrace	https://www.ncbi.nlm.nih.gov/pubmed/29590089	Single-cell	2017	2018	64	Scholar
83	*	SPLIT-seq Split Biosciences	http://science.sciencemag.org/content/360/6385/176	Single-cell	2017	2018	59	Scholar
84	*	RamDA-seq	https://www.nature.com/articles/s41467-018-02866-0	Single-cell	2017	2018	48	Scholar
85	*	snmC-seq2	https://www.nature.com/articles/s41467-018-06355-2	Single-cell	2017	2018	47	Scholar
86	*	scTHS-seq	https://www.nature.com/articles/nbt.4038	Single-cell	2017	2018	44	Scholar
87		BaristaSeq	https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221	Spatial	2017	2018	39	Scholar
88	*	scMNase-seq	https://www.nature.com/articles/s41586-018-0567-3	Single-cell	2017	2018	29	Scholar
89	*	SINC-seq	https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1446-9	Single-cell	2017	2018	28	Scholar
90	*	TracerSeq	http://science.sciencemag.org/content/360/6392/981	Single-cell	2017	2018	21	Scholar
91	*	Trac-looping	https://www.nature.com/articles/s41592-018-0107-y	Single-cell	2017	2018	21	Scholar
92	*	viscRNA-seq	https://www.pnas.org/content/115/52/E12363	Single-cell	2017	2018	13	Scholar
93		Mux-Seq	https://pubmed.ncbi.nlm.nih.gov/34687145/	Single-cell	2017	2018	13	Scholar
94	*	5'GEX scVDJ @10xgenomics	https://www.10xgenomics.com/solutions/vdj/	Single-cell Commercial	2017	2018	6	Scholar
95	*	Chaligne-et-al-2018	https://www.biorxiv.org/content/10.1101/444687v1	Single-cell	2017	2018	0	Scholar
96	*	LINNAEUS	https://www.ncbi.nlm.nih.gov/pubmed/29644996	Single-cell	2017	2018	0	Scholar
97		ProximID	https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221	Spatial	2017	2018	0	Scholar
98		sci-MET	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5938134/	Single-cell	2017	2018	0	Scholar
99		snATAC-seq	https://www.nature.com/articles/s41593-018-0079-3	Single-cell	2017	2018	0	Scholar
100	*	CUT&Tag	https://www.biorxiv.org/content/10.1101/568915v1	Single-cell	2018	2019	5000	Scholar