ABCDEFGH
1
MethodReferenceTypeEarly EstimateLate EstimateCitationsScholar Link
2
smFISH (on RNA)https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial198219832140Scholar
3
LCMhttps://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial1996199794Scholar
4
smFISH (improved protocol)https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial200720081560Scholar
5
,Tang methodhttps://www.nature.com/articles/nmeth.1315Single-cell200820091646Scholar
6
RNAscopehttps://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial201020113030Scholar
7
,CyTOFhttps://www.fluidigm.com/applications/single-cell-advancesSingle-cell201120124590Scholar
8
,STRT-seq / C1https://doi.org/10.1016%2Fj.celrep.2012.08.003Single-cell20112012790Scholar
9
ISS using padlock probeshttps://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial201220135000Scholar
10
RNA-seq of individual cryosectionshttps://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial201220133160Scholar
11
,SMART-seqhttps://doi.org/10.1038%2Fnmeth.2772Single-cell201220132440Scholar
12
,CEL-seqhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4412462/Single-cell201220131150Scholar
13
,PMA / SMAhttps://www.pnas.org/content/110/2/594.shortSingle-cell201220131040Scholar
14
,Quartz-Seqhttps://genomebiology.biomedcentral.com/articles/10.1186/gb-2013-14-4-r31Single-cell20122013333Scholar
15
,TIVAhttps://www.nature.com/articles/nmeth.2804Single-cell201320141240Scholar
16
,scBS-seqhttps://www.ncbi.nlm.nih.gov/pubmed/25042786Single-cell20132014260Scholar
17
,AbPairhttp://biorxiv.org/content/10.1101/134841v1Single-cell2014201417Scholar
18
seqFISHhttps://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial20142015706Scholar
19
,MARS-seqhttps://doi.org/10.1038%2Fnmeth.2639Single-cell20142015597Scholar
20
FISSEQhttps://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial20142015462Scholar
21
,FISSEQhttps://www.nature.com/articles/nprot.2014.191Single-cell20142015449Scholar
22
TIVAhttps://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial20142015430Scholar
23
,G&T-Seqhttps://www.nature.com/articles/nmeth.3370Single-cell20142015368Scholar
24
tomo-seqhttps://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial20142015127Scholar
25
,DR-seqhttp://www.ncbi.nlm.nih.gov/pubmed/25599178Single-cell2014201596Scholar
26
*sci-ATAC-seqhttp://science.sciencemag.org/content/348/6237/910Single-cell2014201588Scholar
27
,SC3-seqhttps://www.ncbi.nlm.nih.gov/pubmed/25722368Single-cell2014201576Scholar
28
*SCTGhttp://www.sciencedirect.com/science/article/pii/S0027510715000044Single-cell2014201523Scholar
29
*SIDR-seqhttp://genome.cshlp.org/content/early/2017/12/05/gr.223263.117.longSingle-cell2014201512Scholar
30
,BAT-seqhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4501847/Single-cell2014201512Scholar
31
*Drop-Chiphttps://www.nature.com/articles/nbt.3383/Single-cell2015201595Scholar
32
*SUPeR-seqhttps://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0706-1Single-cell2015201570Scholar
33
*scMTseqhttps://www.sciencedirect.com/science/article/abs/pii/S157411921500111XSingle-cell2015201564Scholar
34
*Hi-SCLhttp://www.ncbi.nlm.nih.gov/pubmed/26000628Single-cell2015201555Scholar
35
*inDrophttp://www.ncbi.nlm.nih.gov/pubmed/26000487Single-cell201520162730Scholar
36
MERFISHhttps://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial20152016812Scholar
37
*FRISCRhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4869711/Single-cell20152016246Scholar
38
*CEL-Seq2 / C1https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0938-8Single-cell20152016242Scholar
39
*scTrio-seqhttp://www.ncbi.nlm.nih.gov/pubmed/26902283Single-cell20152016129Scholar
40
*CRISP-seqhttp://www.cell.com/cell/abstract/S0092-8674(16)31611-7Single-cell20152016115Scholar
41
*CytoSeqhttp://www.ncbi.nlm.nih.gov/pubmed/25657253Single-cell20152016110Scholar
42
*scM&T-seqhttp://www.ncbi.nlm.nih.gov/pubmed/26752769Single-cell20152016105Scholar
43
*scGESTALThttps://www.ncbi.nlm.nih.gov/pubmed/29608178Single-cell2015201681Scholar
44
*PLAYRhttps://www.ncbi.nlm.nih.gov/pubmed/26808670Single-cell2015201648Scholar
45
*CLaPhttps://www.ncbi.nlm.nih.gov/pubmed/27198043Single-cell2015201627Scholar
46
*Darmanis-et-al-2016https://www.cell.com/cell-reports/pdfExtended/S2211-1247(17)31462-6Single-cell2015201626Scholar
47
*sc-GEMhttps://www.nature.com/articles/nmeth.3961Single-cell2015201618Scholar
48
*Genshaft-et-al-2016https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-1045-6Single-cell2015201617Scholar
49
In silico reconstruction using ISHhttps://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial20152016Scholar
50
*RNAseq @10xgenomicshttps://www.10xgenomics.com/single-cell-technology/Single-cell201620175440Scholar
51
*sc Targetted Gene Expression @fluidigmhttps://www.fluidigm.com/reagents/single-cell-targeted-gene-expressionSingle-cell201620171900Scholar
52
*Patch-seqhttps://bmcbiol.biomedcentral.com/articles/10.1186/s12915-017-0396-0Single-cell20162017436Scholar
53
Geo-seqhttps://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial20162017232Scholar
54
*CROP-seqhttps://www.nature.com/articles/nmeth.4177Single-cell20162017203Scholar
55
*MATQ-seqhttps://www.nature.com/articles/nmeth.4145Single-cell20162017109Scholar
56
*Geo-seqhttps://www.nature.com/articles/nprot.2017.003Single-cell20162017107Scholar
57
*mcSCRB-seqhttps://www.biorxiv.org/content/10.1101/188367v1Single-cell2016201786Scholar
58
NICHE-seqhttps://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial2016201772Scholar
59
*STRT-seq-2ihttps://www.nature.com/articles/s41598-017-16546-4Single-cell2016201757Scholar
60
*scNOMe-seqhttps://elifesciences.org/articles/23203Single-cell2016201751Scholar
61
*SiC-seqhttps://www.nature.com/articles/nbt.3880Single-cell2016201732Scholar
62
*CUT&Runhttps://elifesciences.org/articles/21856Single-cell2016201728Scholar
63
seqFISH (smHCR)https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial2016201719Scholar
64
*RNAseq / Gene Expression @nanostringtechhttps://www.nanostring.com/scientific-content/technology-overview/ncounter-technologySingle-cell201620174Scholar
65
*scTCR Wafergenhttps://www.prnewswire.com/news-releases/wafergen-presents-single-cell-t-cell-receptor-sequencing-results-using-the-icell8-single-cell-system-at-the-2016-single-cell-genomics-meeting-300327741.htmlSingle-cell201620170Scholar
66
*scCOOL-seqhttps://www.nature.com/articles/cr201782Single-cell201620170Scholar
67
SThttps://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial201620170Scholar
68
STARmaphttps://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial201720182090Scholar
69
*CITE-seqhttps://www.nature.com/articles/nmeth.4380Single-cell20172018773Scholar
70
*Seq-Wellhttps://www.nature.com/articles/nmeth.4179Single-cell20172018470Scholar
71
*DroNC-Seqhttps://europepmc.org/abstract/ppr/ppr27414Single-cell20172018423Scholar
72
*scATAC @10xgenomicshttps://www.10xgenomics.com/solutions/single-cell-atac/Single-cell20172018351Scholar
73
*CellTaghttps://www.biorxiv.org/content/10.1101/335547v1Single-cell20172018269Scholar
74
*scNMT triple omicshttps://www.biorxiv.org/content/early/2019/01/13/519207Single-cell20172018186Scholar
75
*sci-RNA-seqhttp://science.sciencemag.org/content/357/6352/661Single-cell20172018151Scholar
76
osmFISHhttps://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial20172018146Scholar
77
*scRNA-Seq Dolomite Biohttps://www.dolomite-bio.com/product/nadia-instrument/Single-cell2017201883Scholar
78
*Quartz-Seq2https://www.biorxiv.org/content/10.1101/159384v3Single-cell2017201870Scholar
79
*ScarTracehttps://www.ncbi.nlm.nih.gov/pubmed/29590089Single-cell2017201864Scholar
80
*SPLIT-seq Split Bioscienceshttp://science.sciencemag.org/content/360/6385/176Single-cell2017201859Scholar
81
*RamDA-seqhttps://www.nature.com/articles/s41467-018-02866-0Single-cell2017201848Scholar
82
*snmC-seq2https://www.nature.com/articles/s41467-018-06355-2Single-cell2017201847Scholar
83
*scTHS-seqhttps://www.nature.com/articles/nbt.4038Single-cell2017201844Scholar
84
BaristaSeqhttps://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial2017201839Scholar
85
*scMNase-seqhttps://www.nature.com/articles/s41586-018-0567-3Single-cell2017201829Scholar
86
*SINC-seqhttps://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1446-9Single-cell2017201828Scholar
87
*TracerSeqhttp://science.sciencemag.org/content/360/6392/981Single-cell2017201821Scholar
88
*Trac-loopinghttps://www.nature.com/articles/s41592-018-0107-ySingle-cell2017201821Scholar
89
*viscRNA-seqhttps://www.pnas.org/content/115/52/E12363Single-cell2017201813Scholar
90
*scVDJ @10xgenomicshttps://www.10xgenomics.com/solutions/vdj/Single-cell201720186Scholar
91
*Chaligne-et-al-2018https://www.biorxiv.org/content/10.1101/444687v1Single-cell201720180Scholar
92
*LINNAEUShttps://www.ncbi.nlm.nih.gov/pubmed/29644996Single-cell201720180Scholar
93
ProximIDhttps://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial201720180Scholar
94
*CUT&Taghttps://www.biorxiv.org/content/10.1101/568915v1Single-cell201820195000Scholar
95
*Multiplex Droplet scRNAseqhttps://www.nature.com/articles/nbt.4042Single-cell201820192750Scholar
96
*C1 CAGE single cellhttps://www.nature.com/articles/s41467-018-08126-5Single-cell201820191000Scholar
97
seqFISH+https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial20182019995Scholar
98
*snRNA-seqhttps://www.biorxiv.org/content/10.1101/476036v1Single-cell20182019684Scholar
99
*CellTagginghttps://www.protocols.io/view/single-cell-mapping-of-lineage-and-identity-via-ce-yxifxkeSingle-cell20182019531Scholar
100
Slide-Seqhttps://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900221Spatial20182019502Scholar