ProteinAnnotation Mapping
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Subtitle
For instructions please see:
https://goo.gl/VKYRUf
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Description
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schema.orgbioschemas
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PropertyExpected TypeDescriptionBSC DescriptionMarginalityCardinalityControlled Vocabulary
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Extends Thing
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additionalTypeURLAn additional type for the item, typically used for adding more specific types from external vocabularies in microdata syntax. This is a relationship between something and a class that the thing is in. In RDFa syntax, it is better to use the native RDFa syntax - the 'typeof' attribute - for multiple types. Schema.org tools may have only weaker understanding of extra types, in particular those defined externally.ProteinAnnotation profile usage.

Currently, a ProteinAnnotation additional type should be set to any of the values defined in the controlled vocabulary. If you want to add other terms, please contact Bioschemas.
MinimumMANYSIO:http://semanticscience.org/resource/SIO_001379.rdf,
SIO:http://semanticscience.org/resource/SIO_001380.rdf,
SIO:http://semanticscience.org/resource/SIO_010049.rdf,
SIO:http://semanticscience.org/resource/SIO_010040.rdf,
SIO:http://semanticscience.org/resource/SIO_010041.rdf
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alternateNameTextAn alias for the item.RecommendedMANY
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descriptionTextA description of the item.RecommendedONE
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identifierPropertyValue or
Text or
URL
The identifier property represents any kind of identifier for any kind of Thing, such as ISBNs, GTIN codes, UUIDs etc. Schema.org provides dedicated properties for representing many of these, either as textual strings or as URL (URI) links. See background notes for more details.Recommendation: identifiers.org whenever possibleMinimumONE
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imageImageObject or
URL
An image of the item. This can be a URL or a fully described ImageObject.OptionalMANY
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mainEntityOfPageCreativeWork or URL Indicates a page (or other CreativeWork) for which this thing is the main entity being described. See background notes for details.
Inverse property: mainEntity

Bioschemas usage.

Link via Record or URL to the main Record representing this entity in a dataset
Bioschemas usage.

Link via Record or URL to the main Record representing this entity in a dataset
OptionalONE
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nameTextThe name of the item.RecommendedONE
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sameAsURL
URL of a reference Web page that unambiguously indicates the item's identity. E.g. the URL of the item's Wikipedia page, Wikidata entry, or official website.

Bioschemas usage.

Link to any resource other than the Record and the official Webpage, for instance a Wikipedia page.
URL of a reference Web page that unambiguously indicates the item's identity. E.g. the URL of the item's Wikipedia page, Wikidata entry, or official website.

Bioschemas usage.

Link to any resource other than the Record and the official Webpage, for instance a Wikipedia page.
OptionalMANY
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urlURLURL of the item.
Bioschemas usage.

Link to the official webpage associated to this entity.
RecommendedONE
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New Properties
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additionalPropertyPropertyValueA property-value pair representing an additional characteristics of the entitity, e.g. a product feature or another characteristic for which there is no matching property in schema.org.

Note: Publishers should be aware that applications designed to use specific schema.org properties (e.g. http://schema.org/width, http://schema.org/color, http://schema.org/gtin13, ...) will typically expect such data to be provided using those properties, rather than using the generic property/value mechanism.
Bioschemas usage.

Additional to the use of name and description to describe this property in a human-readable way, additionalType should be used to specify the nature of the property/relation.

Controlled vocabularies should be used whenever possible.
OptionalMANY
Yes, as better suits to describe this additional property
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additionalProperty.creation_method
PropertyValueMethod used to create this annotationMethod used to create this annotationRecommendedONE
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isContainedIn
BioChemEntity or URL
Indicates a BioChemEntity that this BioChemEntity is (in some sense) part of.
Indicates a BioChemEntity that this BioChemEntity is (in some sense) part of.
OptionalMANY
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contains
BioChemEntity or URL
Indicates a BioChemEntity that is (in some sense) a part of this BioChemEntity. Inverse property: isPartOf.
Indicates a BioChemEntity that is (in some sense) a part of this BioChemEntity. Inverse property: isPartOf.
OptionalMANY
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location
Place, PostalAddress, PropertyValue, Text or URL
The location of for example where the event is happening, an organization is located, or where an action takes place.

Bioschemas usage.

In Bioschemas location can be refer to a position in a chromosome or sequence or to a physical place where, for instance, a sample is stored. Using additionalType is advised to make the distinction. For instance, FALDO can be used for sequence coordinates.
The location of for example where the event is happening, an organization is located, or where an action takes place.

Bioschemas usage.

In Bioschemas location can be refer to a position in a chromosome or sequence or to a physical place where, for instance, a sample is stored. Using additionalType is advised to make the distinction. For instance, FALDO can be used for sequence coordinates.
OptionalMANY
Yes, as it better suits to describe the location.
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hasRepresentationText or URL or PropertyValueRepresentation of this entity. For instance, chemical structure or sequenceRepresentation of this entity. For instance, chemical structure or sequenceOptionalMANY
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preferredLabelTextIndicates the preferred label to refer to a specific (sub)type of BioChemEntityProfile name. For the Protein profile it MUST be "ProteinAnnotation"MinimumONEBioschemas profiles
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