UMGC Sequencer Home


1
2	Illumina NGS Project Home		Questions? E-mail: next-gen@umn.edu. This is a web-published Google Sheet best viewed using Google Chrome or Apple Safari browsers. Firefox is not recommended.
3	This "Dashboard" page serves as a simplifed version of the UMGC Sequencer Home Sample and Run Queues. See the explainer at right for more details.
4
5	Project	Sample Queue	Run Type	Est'd Lib Completion	Est'd Run Completion	Project Status
6	10X_Nano_Pool_012_061819	MiSeq Standard	2x150 Nano Run (1M Reads)	6/18/2019	6/20/2019	Sequencing
7	10X_Nano_Pool_014_061819	MiSeq Standard	2x150 Nano Run (1M Reads)	6/18/2019	6/20/2019	Sequencing
8	10X_TCR_Pool_013_061819	MiSeq Standard	2x150 Nano Run (1M Reads)	6/18/2019	6/21/2019	In Seq Queue
9	10X_TCR_Pool_015_061919 (See Hart2_001Notes)	MiSeq Standard	2x150 Nano Run (1M Reads)	6/19/2019	6/20/2019	Sequencing
10	Abreu_007	NextSeq Standard	2x150 Mid (130M Reads)	6/25/2019	6/15/2019	Post Run QC
11	Alanabeh_001	Stowaway-Seq	2x300 Paired-end	6/14/2019		In Seq Queue
12	Alejandro_004 (Reseq)	NextSeq Standard	2x75 High (400M Reads)	6/17/2019	6/19/2019	Post Run QC
13	Anderson2_034 (100SR)	HiSeq 2500 2x50 Paired-end	2x50 Paired-end Libraries	6/4/2019		Library Prep
14	Anderson2_035 (100SR)	HiSeq 2500 2x50 Paired-end	2x50 Paired-end Libraries	6/4/2019	6/11/2019	Post Run QC
15	Beattie_002_Run_1	MiSeq Standard	2x300 Version 3 Chemistry (16-22M Reads)	6/20/2019	6/24/2019	Library Prep
16	Beattie_002_Run_2	MiSeq Standard	2x300 Version 3 Chemistry (16-22M Reads)	6/20/2019		Library Prep
17	Beattie_002_Run_3	MiSeq Standard	2x300 Version 3 Chemistry (16-22M Reads)	6/20/2019		Library Prep
18	Beattie_002_Run_4	MiSeq Standard	2x300 Version 3 Chemistry (16-22M Reads)	6/20/2019		Library Prep
19	Beattie_002_Run_5	MiSeq Standard	2x300 Version 3 Chemistry (16-22M Reads)	6/20/2019		Library Prep
20	Beattie_002_Run_6	MiSeq Standard	2x300 Version 3 Chemistry (16-22M Reads)	6/20/2019		Library Prep
21	Beck_002	Stowaway-Seq	2x300 Paired-end	5/17/2019	6/17/2019	Post Run QC
22	Blekhman_031	NovaSeq 2x150 Paired-end	2x150 Paired-end	6/12/2019	6/19/2019	Post Run QC
23	Braunlin_008	HiSeq 2500 2x50 Paired-end	2x50 Paired-end Libraries	6/24/2019		In Seq Queue
24	Bushley_033	NextSeq Standard	1x75 High (400M Reads)	6/24/2019		Library Prep
25	Deng3_003	NextSeq Standard	1x150 High (400M Reads)	6/12/2019	6/18/2019	Post Run QC
26	Duan_012	NovaSeq 2x50 Paired-end	2x50 Paired-end	5/31/2019	6/19/2019	Post Run QC
27	Dunny_048 (ReSeqx2)	NovaSeq 2x150 Paired-end	2x150 Paired-end	4/16/2019		Library Prep
28	Farrar_029	NovaSeq 2x150 Paired-end	2x150 Paired-end	6/21/2019	6/25/2019	Library Prep
29	Ferrieri_001	HiSeq 2500 2x125 Paired-end	2x125 Paired-end Libraries	5/29/2019	6/4/2019	Post Run QC
30	Figueroa_006	MiSeq Standard	2x150 Nano Run (1M Reads)	7/4/2019		Library Prep
31	Figueroa_006	NovaSeq 2x150 Paired-end	2x150 Paired-end	7/4/2019		Library Prep
32	Gale_020_Run_1	MiSeq Standard	2x250 Version 2 Chemistry (8-12M Reads)	6/20/2019		Library Prep
33	Gale_020_Run_2	MiSeq Standard	2x250 Version 2 Chemistry (8-12M Reads)	6/20/2019		Library Prep
34	Gale_020_Run_3	MiSeq Standard	2x250 Version 2 Chemistry (8-12M Reads)	6/20/2019		Library Prep
35	Garry_073	NextSeq Standard	1x75 High (400M Reads)	6/18/2019	6/18/2019	Post Run QC
36	GBS_Group_R	NovaSeq 1x100 Single Read	1x100 Single Read	6/21/2019		Library Prep
37	GBS_Group_T	NextSeq Standard	1x150 High (400M Reads)	6/17/2019	6/19/2019	Post Run QC
38	Geraghty_006	Stowaway-Seq	2x300 Paired-end	5/31/2019	6/17/2019	Post Run QC
39	Gomez_007 Pilot	NovaSeq 2x150 Paired-end	2x150 Paired-end	5/15/2019		In Seq Queue
40	Gorr_029	MiSeq Standard	2x250 Version 2 Chemistry (8-12M Reads)	6/5/2019	6/19/2019	Post Run QC
41	Goyal_031	HiSeq 2500 2x125 Paired-end	2x125 Paired-end Libraries	5/29/2019	6/4/2019	Post Run QC
42	Goyal_032	HiSeq 2500 2x125 Paired-end	2x125 Paired-end Libraries	5/15/2019	6/4/2019	Post Run QC
43	Hamilton2_016	NovaSeq 2x250 Paired-end	2x250 Paired-end	6/6/2019	6/24/2019	In Seq Queue
44	Harris	MiSeq Standard	2x75 Version 3 Chemistry (16-22M Reads)	6/20/2019		Library Prep
45	Iezzoni_001_Nano_QC	MiSeq Standard	2x150 Nano Run (1M Reads)	6/7/2019	6/18/2019	Post Run QC
46	Igarashi_015	HiSeq 2500 2x50 Paired-end	2x50 Paired-end Libraries	5/29/2019		In Seq Queue
47	Jameson_Project_020_GEX_FL	NovaSeq 2x150 Paired-end	2x150 Paired-end	6/14/2019		Library Prep
48	Jameson_Project_020_TCR_FL	NovaSeq 2x150 Paired-end	2x150 Paired-end	6/14/2019		Library Prep
49	Johnson_090/094	MiSeq Standard	2x150 Nano Run (1M Reads)	6/18/2019		Library Prep
50	Johnson_091/Johnson_094	NovaSeq 2x150 Paired-end	2x150 Paired-end	6/19/2019		Library Prep
51	Kikyo_062	NovaSeq 2x50 Paired-end	2x50 Paired-end	6/14/2019		In Seq Queue
52	Kimball_002	MiSeq Standard	2x250 Nano Run (1M Reads)	6/20/2019		Library Prep
53	Kimball_003	NovaSeq 2x150 Paired-end	2x150 Paired-end	6/20/2019		Library Prep
54	Kobayashi2_005	HiSeq 2500 2x50 Paired-end	2x50 Paired-end Libraries	6/25/2019		In Seq Queue
55	Koob_004	NovaSeq 2x150 Paired-end	2x150 Paired-end	6/20/2019		In Seq Queue
56	Largaespada_127 Pool 1	NovaSeq 2x150 Paired-end	2x150 Paired-end	6/6/2019	6/18/2019	Post Run QC
57	Largaespada_127 Pool 2	NovaSeq 2x150 Paired-end	2x150 Paired-end	6/6/2019	6/18/2019	Post Run QC
58	Lawrence2_001	HiSeq 2500 2x50 Paired-end	2x50 Paired-end Libraries	6/27/2019		Library Prep
59	Lim2_001_Superpool_Novaseq	NovaSeq 2x100 Paired-end	2x100 Paired-end	6/6/2019	6/20/2019	In Seq Queue
60	Marks_047	NovaSeq 2x50 Paired-end	2x50 Paired-end	5/31/2019	6/21/2019	In Seq Queue
61	Marks_048	NovaSeq 2x150 Paired-end	2x150 Paired-end	6/20/2019	6/25/2019	In Seq Queue
62	Marks_049	NextSeq Standard	2x75 High (400M Reads)	6/20/2019		Library Prep
63	Marks_050	NovaSeq 2x150 Paired-end	2x150 Paired-end	5/24/2019		In Seq Queue
64	Marks_052	NovaSeq 2x150 Paired-end	2x150 Paired-end	6/17/2019		Library Prep
65	McGaugh3_003	NovaSeq 2x150 Paired-end	2x150 Paired-end	5/16/2019	6/19/2019	Post Run QC
66	McGaugh3_004	NextSeq Standard	1x150 Mid (130M Reads)	6/7/2019	6/13/2019	Post Run QC
67	MDL_023_Run_1	MiSeq Standard	2x150 Nano Run (1M Reads)	6/20/2019	6/21/2019	Library Prep
68	MDL_023_Run_2	MiSeq Standard	2x150 Nano Run (1M Reads)	6/20/2019	6/21/2019	Library Prep
69	MDL_Project_023	NovaSeq 2x150 Paired-end	2x150 Paired-end	6/20/2019	6/23/2019	Library Prep
70	Moeller_018	NovaSeq 1x100 Single Read	1x100 Single Read	5/15/2019	6/14/2019	Post Run QC
71	Moeller_023	NovaSeq 1x100 Single Read	1x100 Single Read	6/5/2019	6/19/2019	Post Run QC
72	Mor_116	MiSeq VDL	2x250 Version 2 Chemistry (8-12M Reads)		6/16/2019	Sequencing
73	Munderloh_005 (ReSeq)	MiSeq Standard	2x250 Version 2 Chemistry (8-12M Reads)	6/12/2019	6/16/2019	Post Run QC
74	Munderloh_005 (ReSeqx2)	MiSeq Standard	2x250 Version 2 Chemistry (8-12M Reads)	6/12/2019		In Seq Queue
75	Murray3_002	Stowaway-Seq	2x300 Paired-end	6/14/2019		In Seq Queue
76	MySeq_Stowaway_071	MiSeq Standard	2x300 Version 3 Chemistry (16-22M Reads)	6/14/2019	6/16/2019	Post Run QC
77	Noyes_004	NovaSeq 2x150 Paired-end	2x150 Paired-end	6/6/2019	6/19/2019	Post Run QC
78	O'Grady_007	Stowaway-Seq	2x300 Paired-end	5/31/2019	6/17/2019	Post Run QC
79	Offer_001	NovaSeq 2x50 Paired-end	2x50 Paired-end	6/19/2019	6/21/2019	In Seq Queue
80	Orr_031	NovaSeq 2x100 Paired-end	2x100 Paired-end	5/7/2019	6/20/2019	In Seq Queue
81	Orr_031_Nano_QC	MiSeq Standard	2x150 Nano Run (1M Reads)	5/30/2019	5/30/2019	Post Run QC
82	Paulitz_003	MiSeq Standard	2x300 Version 3 Chemistry (16-22M Reads)	6/19/2019		Library Prep
83	PepsiCo_301	NovaSeq 2x250 Paired-end	2x250 Paired-end	6/12/2019		In Seq Queue
84	PepsiCo_302	NovaSeq 2x250 Paired-end	2x250 Paired-end	6/21/2019		Library Prep
85	PepsiCo_Project_229 (ReSeq)	MiSeq Standard	2x150 Micro Run (4M Reads)	5/28/2019	6/13/2019	Post Run QC
86	Perlingeiro_059 (ReSeqx2)	MiSeq Standard	2x75 Version 3 Chemistry (16-22M Reads)	6/3/2019		Library Prep
87	Phelps_022 Pool 4	HiSeq 2500 2x125 Paired-end	2x125 Paired-end Libraries	4/9/2019	6/4/2019	Post Run QC
88	Phelps_022 Pool 5	HiSeq 2500 2x125 Paired-end	2x125 Paired-end Libraries	4/9/2019	6/4/2019	Post Run QC
89	Phelps_023	HiSeq 2500 2x125 Paired-end	2x125 Paired-end Libraries	5/15/2019	6/4/2019	Post Run QC
90	Pieters_008	MiSeq Standard	2x300 Version 3 Chemistry (16-22M Reads)	6/21/2019	6/24/2019	Library Prep
91	Pieters_008	MiSeq Standard	2x300 Version 3 Chemistry (16-22M Reads)	6/21/2019	6/24/2019	Library Prep
92	Ro_001	MiSeq Standard	2x300 Version 3 Chemistry (16-22M Reads)	5/29/2019	6/3/2019	Post Run QC
93	Ruan_019_pool_2_NovaSeq	NovaSeq 2x100 Paired-end	2x100 Paired-end	6/7/2019	6/13/2019	Post Run QC
94	Russo_001_16S_Run_2	MiSeq Standard	2x300 Version 3 Chemistry (16-22M Reads)	5/14/2019	6/3/2019	Post Run QC
95	Russo_001_16S_Run_3	MiSeq Standard	2x300 Version 3 Chemistry (16-22M Reads)	6/26/2019		Library Prep
96	Russo_001_16S_Run_4	MiSeq Standard	2x300 Version 3 Chemistry (16-22M Reads)	6/26/2019		Library Prep
97	Russo_001_ITS_Run_2	MiSeq Standard	2x300 Version 3 Chemistry (16-22M Reads)	6/26/2019		Library Prep
98	Russo_001_ITS_Run_3	MiSeq Standard	2x300 Version 3 Chemistry (16-22M Reads)	6/26/2019		Library Prep
99	Russo_001_ITS_Run_4	MiSeq Standard	2x300 Version 3 Chemistry (16-22M Reads)	6/26/2019		Library Prep
100	Salomon_001	Stowaway-Seq	2x300 Paired-end	5/17/2019	6/17/2019	Post Run QC
101	Sardi_002	MiSeq Standard	2x250 Version 2 Chemistry (8-12M Reads)	6/12/2019	6/19/2019	Post Run QC
102	Schlautman_004 (ReSeq)	NovaSeq 1x100 Single Read	1x100 Single Read	5/7/2019	6/14/2019	Post Run QC
103	Schroeder2_002	Stowaway-Seq	2x300 Paired-end	5/31/2019	6/17/2019	Post Run QC
104	Shannon2_002	NextSeq Standard	1x150 Mid (130M Reads)	6/21/2019		Library Prep
105	Shapiro_001_002	NovaSeq 1x100 Single Read	1x100 Single Read	5/20/2019		Delayed
106	Shapiro_003	NovaSeq 1x100 Single Read	1x100 Single Read	6/4/2019		Delayed
107	Shapiro_003_Nano_QC	MiSeq Standard	2x150 Nano Run (1M Reads)	6/5/2019	6/19/2019	Post Run QC
108	Shapiro_003_Nano_QC	MiSeq Standard	2x150 Nano Run (1M Reads)	6/5/2019	6/18/2019	Post Run QC
109	Sheik_012	NovaSeq 2x150 Paired-end	2x150 Paired-end	6/6/2019	6/19/2019	Post Run QC
110	Smanski_005	MiSeq Standard
111	Staley_020	NovaSeq 2x150 Paired-end	2x150 Paired-end	6/21/2019		Library Prep
112	Staley_026	Stowaway-Seq	2x300 Paired-end	6/14/2019		In Seq Queue
113	Starr_Project_088_PT_136	HiSeq 2500 10x Single-cell	10x Single-cell Paired-end SI 27x99 Libraries	4/30/2019		Library Prep
114	Starr_Project_088_PT_138	HiSeq 2500 10x Single-cell	10x Single-cell Paired-end SI 27x99 Libraries	4/30/2019		Library Prep
115	Thyagarajan_028_Run_10	NovaSeq 2x50 Paired-end	2x50 Paired-end	6/21/2019		Library Prep
116	Thyagarajan_028_Run_15	NovaSeq 2x50 Paired-end	2x50 Paired-end	6/21/2019		Library Prep
117	Thyagarajan_028_Run_22 (ReSeqx2)	NovaSeq 2x50 Paired-end	2x50 Paired-end	5/15/2019	6/15/2019	Post Run QC
118	Thyagarajan_028_Run_23	NovaSeq 2x50 Paired-end	2x50 Paired-end	6/21/2019		Library Prep
119	Tran_004	HiSeq 2500 2x50 Paired-end	2x50 Paired-end Libraries	6/19/2019		Library Prep
120	Travisano_021	NovaSeq 2x50 Paired-end	2x50 Paired-end	6/19/2019		Library Prep
121	Tretyakova_011	HiSeq 2500 2x50 Paired-end	2x50 Paired-end Libraries	6/13/2019		In Seq Queue
122	UMGC_565 and IL_020	NextSeq Standard	2x150 High (400M Reads)	6/14/2019	6/15/2019	Post Run QC
123	Vernick2_033	MiSeq Standard	2x250 Version 2 Chemistry (8-12M Reads)	6/17/2019		Library Prep
124	Wertheim_001	MiSeq Standard	2x300 Version 3 Chemistry (16-22M Reads)	6/19/2019		Library Prep
125	Young_054	HiSeq 2500 2x125 Paired-end	2x125 Paired-end Libraries	5/16/2019	6/4/2019	Post Run QC
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1

2

Illumina NGS Project Home

Questions? E-mail: next-gen@umn.edu. This is a web-published Google Sheet best viewed using Google Chrome or Apple Safari browsers. Firefox is not recommended.

3

This "Dashboard" page serves as a simplifed version of the UMGC Sequencer Home Sample and Run Queues. See the explainer at right for more details.

4

5

Project

Sample Queue

Run Type

Est'd Lib Completion

Est'd Run Completion

Project Status

6

10X_Nano_Pool_012_061819

MiSeq Standard

2x150 Nano Run (1M Reads)

6/18/2019

6/20/2019

Sequencing

7

10X_Nano_Pool_014_061819

MiSeq Standard

2x150 Nano Run (1M Reads)

6/18/2019

6/20/2019

Sequencing

8

10X_TCR_Pool_013_061819

MiSeq Standard

2x150 Nano Run (1M Reads)

6/18/2019

6/21/2019

In Seq Queue

9

10X_TCR_Pool_015_061919 (See Hart2_001Notes)

MiSeq Standard

2x150 Nano Run (1M Reads)

6/19/2019

6/20/2019

Sequencing

10

Abreu_007

NextSeq Standard

2x150 Mid (130M Reads)

6/25/2019

6/15/2019

Post Run QC

11

Alanabeh_001

Stowaway-Seq

2x300 Paired-end

6/14/2019

In Seq Queue

12

Alejandro_004 (Reseq)

NextSeq Standard

2x75 High (400M Reads)

6/17/2019

6/19/2019

Post Run QC

13

Anderson2_034 (100SR)

HiSeq 2500 2x50 Paired-end

2x50 Paired-end Libraries

6/4/2019

Library Prep

14

Anderson2_035 (100SR)

HiSeq 2500 2x50 Paired-end

2x50 Paired-end Libraries

6/4/2019

6/11/2019

Post Run QC

15

Beattie_002_Run_1

MiSeq Standard

2x300 Version 3 Chemistry (16-22M Reads)

6/20/2019

6/24/2019

Library Prep

16

Beattie_002_Run_2

MiSeq Standard

2x300 Version 3 Chemistry (16-22M Reads)

6/20/2019

Library Prep

17

Beattie_002_Run_3

MiSeq Standard

2x300 Version 3 Chemistry (16-22M Reads)

6/20/2019

Library Prep

18

Beattie_002_Run_4

MiSeq Standard

2x300 Version 3 Chemistry (16-22M Reads)

6/20/2019

Library Prep

19

Beattie_002_Run_5

MiSeq Standard

2x300 Version 3 Chemistry (16-22M Reads)

6/20/2019

Library Prep

20

Beattie_002_Run_6

MiSeq Standard

2x300 Version 3 Chemistry (16-22M Reads)

6/20/2019

Library Prep

21

Beck_002

Stowaway-Seq

2x300 Paired-end

5/17/2019

6/17/2019

Post Run QC

22

Blekhman_031

NovaSeq 2x150 Paired-end

2x150 Paired-end

6/12/2019

6/19/2019

Post Run QC

23

Braunlin_008

HiSeq 2500 2x50 Paired-end

2x50 Paired-end Libraries

6/24/2019

In Seq Queue

24

Bushley_033

NextSeq Standard

1x75 High (400M Reads)

6/24/2019

Library Prep

25

Deng3_003

NextSeq Standard

1x150 High (400M Reads)

6/12/2019

6/18/2019

Post Run QC

26

Duan_012

NovaSeq 2x50 Paired-end

2x50 Paired-end

5/31/2019

6/19/2019

Post Run QC

27

Dunny_048 (ReSeqx2)

NovaSeq 2x150 Paired-end

2x150 Paired-end

4/16/2019

Library Prep

28

Farrar_029

NovaSeq 2x150 Paired-end

2x150 Paired-end

6/21/2019

6/25/2019

Library Prep

29

Ferrieri_001

HiSeq 2500 2x125 Paired-end

2x125 Paired-end Libraries

5/29/2019

6/4/2019

Post Run QC

30

Figueroa_006

MiSeq Standard

2x150 Nano Run (1M Reads)

7/4/2019

Library Prep

31

Figueroa_006

NovaSeq 2x150 Paired-end

2x150 Paired-end

7/4/2019

Library Prep

32

Gale_020_Run_1

MiSeq Standard

2x250 Version 2 Chemistry (8-12M Reads)

6/20/2019

Library Prep

33

Gale_020_Run_2

MiSeq Standard

2x250 Version 2 Chemistry (8-12M Reads)

6/20/2019

Library Prep

34

Gale_020_Run_3

MiSeq Standard

2x250 Version 2 Chemistry (8-12M Reads)

6/20/2019

Library Prep

35

Garry_073

NextSeq Standard

1x75 High (400M Reads)

6/18/2019

Post Run QC

36

GBS_Group_R

NovaSeq 1x100 Single Read

1x100 Single Read

6/21/2019

Library Prep

37

GBS_Group_T

NextSeq Standard

1x150 High (400M Reads)

6/17/2019

6/19/2019

Post Run QC

38

Geraghty_006

Stowaway-Seq

2x300 Paired-end

5/31/2019

6/17/2019

Post Run QC

39

Gomez_007 Pilot

NovaSeq 2x150 Paired-end

2x150 Paired-end

5/15/2019

In Seq Queue

40

Gorr_029

MiSeq Standard

2x250 Version 2 Chemistry (8-12M Reads)

6/5/2019

6/19/2019

Post Run QC

41

Goyal_031

HiSeq 2500 2x125 Paired-end

2x125 Paired-end Libraries

5/29/2019

6/4/2019

Post Run QC

42

Goyal_032

HiSeq 2500 2x125 Paired-end

2x125 Paired-end Libraries

5/15/2019

6/4/2019

Post Run QC

43

Hamilton2_016

NovaSeq 2x250 Paired-end

2x250 Paired-end

6/6/2019

6/24/2019

In Seq Queue

44

Harris

MiSeq Standard

2x75 Version 3 Chemistry (16-22M Reads)

6/20/2019

Library Prep

45

Iezzoni_001_Nano_QC

MiSeq Standard

2x150 Nano Run (1M Reads)

6/7/2019

6/18/2019

Post Run QC

46

Igarashi_015

HiSeq 2500 2x50 Paired-end

2x50 Paired-end Libraries

5/29/2019

In Seq Queue

47

Jameson_Project_020_GEX_FL

NovaSeq 2x150 Paired-end

2x150 Paired-end

6/14/2019

Library Prep

48

Jameson_Project_020_TCR_FL

NovaSeq 2x150 Paired-end

2x150 Paired-end

6/14/2019

Library Prep

49

Johnson_090/094

MiSeq Standard

2x150 Nano Run (1M Reads)

6/18/2019

Library Prep

50

Johnson_091/Johnson_094

NovaSeq 2x150 Paired-end

2x150 Paired-end

6/19/2019

Library Prep

51

Kikyo_062

NovaSeq 2x50 Paired-end

2x50 Paired-end

6/14/2019

In Seq Queue

52

Kimball_002

MiSeq Standard

2x250 Nano Run (1M Reads)

6/20/2019

Library Prep

53

Kimball_003

NovaSeq 2x150 Paired-end

2x150 Paired-end

6/20/2019

Library Prep

54

Kobayashi2_005

HiSeq 2500 2x50 Paired-end

2x50 Paired-end Libraries

6/25/2019

In Seq Queue

55

Koob_004

NovaSeq 2x150 Paired-end

2x150 Paired-end

6/20/2019

In Seq Queue

56

Largaespada_127 Pool 1

NovaSeq 2x150 Paired-end

2x150 Paired-end

6/6/2019

6/18/2019

Post Run QC

57

Largaespada_127 Pool 2

NovaSeq 2x150 Paired-end

2x150 Paired-end

6/6/2019

6/18/2019

Post Run QC

58

Lawrence2_001

HiSeq 2500 2x50 Paired-end

2x50 Paired-end Libraries

6/27/2019

Library Prep

59

Lim2_001_Superpool_Novaseq

NovaSeq 2x100 Paired-end

2x100 Paired-end

6/6/2019

6/20/2019

In Seq Queue

60

Marks_047

NovaSeq 2x50 Paired-end

2x50 Paired-end

5/31/2019

6/21/2019

In Seq Queue

61

Marks_048

NovaSeq 2x150 Paired-end

2x150 Paired-end

6/20/2019

6/25/2019

In Seq Queue

62

Marks_049

NextSeq Standard

2x75 High (400M Reads)

6/20/2019

Library Prep

63

Marks_050

NovaSeq 2x150 Paired-end

2x150 Paired-end

5/24/2019

In Seq Queue

64

Marks_052

NovaSeq 2x150 Paired-end

2x150 Paired-end

6/17/2019

Library Prep

65

McGaugh3_003

NovaSeq 2x150 Paired-end

2x150 Paired-end

5/16/2019

6/19/2019

Post Run QC

66

McGaugh3_004

NextSeq Standard

1x150 Mid (130M Reads)

6/7/2019

6/13/2019

Post Run QC

67

MDL_023_Run_1

MiSeq Standard

2x150 Nano Run (1M Reads)

6/20/2019

6/21/2019

Library Prep

68

MDL_023_Run_2

MiSeq Standard

2x150 Nano Run (1M Reads)

6/20/2019

6/21/2019

Library Prep

69

MDL_Project_023

NovaSeq 2x150 Paired-end

2x150 Paired-end

6/20/2019

6/23/2019

Library Prep

70

Moeller_018

NovaSeq 1x100 Single Read

1x100 Single Read

5/15/2019

6/14/2019

Post Run QC

71

Moeller_023

NovaSeq 1x100 Single Read

1x100 Single Read

6/5/2019

6/19/2019

Post Run QC

72

Mor_116

MiSeq VDL

2x250 Version 2 Chemistry (8-12M Reads)

6/16/2019

Sequencing

73

Munderloh_005 (ReSeq)

MiSeq Standard

2x250 Version 2 Chemistry (8-12M Reads)

6/12/2019

6/16/2019

Post Run QC

74

Munderloh_005 (ReSeqx2)

MiSeq Standard

2x250 Version 2 Chemistry (8-12M Reads)

6/12/2019

In Seq Queue

75

Murray3_002

Stowaway-Seq

2x300 Paired-end

6/14/2019

In Seq Queue

76

MySeq_Stowaway_071

MiSeq Standard

2x300 Version 3 Chemistry (16-22M Reads)

6/14/2019

6/16/2019

Post Run QC

77

Noyes_004

NovaSeq 2x150 Paired-end

2x150 Paired-end

6/6/2019

6/19/2019

Post Run QC

78

O'Grady_007

Stowaway-Seq

2x300 Paired-end

5/31/2019

6/17/2019

Post Run QC

79

Offer_001

NovaSeq 2x50 Paired-end

2x50 Paired-end

6/19/2019

6/21/2019

In Seq Queue

80

Orr_031

NovaSeq 2x100 Paired-end

2x100 Paired-end

5/7/2019

6/20/2019

In Seq Queue

81

Orr_031_Nano_QC

MiSeq Standard

2x150 Nano Run (1M Reads)

5/30/2019

Post Run QC

82

Paulitz_003

MiSeq Standard

2x300 Version 3 Chemistry (16-22M Reads)

6/19/2019

Library Prep

83

PepsiCo_301

NovaSeq 2x250 Paired-end

2x250 Paired-end

6/12/2019

In Seq Queue

84

PepsiCo_302

NovaSeq 2x250 Paired-end

2x250 Paired-end

6/21/2019

Library Prep

85

PepsiCo_Project_229 (ReSeq)

MiSeq Standard

2x150 Micro Run (4M Reads)

5/28/2019

6/13/2019

Post Run QC

86

Perlingeiro_059 (ReSeqx2)

MiSeq Standard

2x75 Version 3 Chemistry (16-22M Reads)

6/3/2019

Library Prep

87

Phelps_022 Pool 4

HiSeq 2500 2x125 Paired-end

2x125 Paired-end Libraries

4/9/2019

6/4/2019

Post Run QC

88

Phelps_022 Pool 5

HiSeq 2500 2x125 Paired-end

2x125 Paired-end Libraries

4/9/2019

6/4/2019

Post Run QC

89

Phelps_023

HiSeq 2500 2x125 Paired-end

2x125 Paired-end Libraries

5/15/2019

6/4/2019

Post Run QC

90

Pieters_008

MiSeq Standard

2x300 Version 3 Chemistry (16-22M Reads)

6/21/2019

6/24/2019

Library Prep

91

Pieters_008

MiSeq Standard

2x300 Version 3 Chemistry (16-22M Reads)

6/21/2019

6/24/2019

Library Prep

92

Ro_001

MiSeq Standard

2x300 Version 3 Chemistry (16-22M Reads)

5/29/2019

6/3/2019

Post Run QC

93

Ruan_019_pool_2_NovaSeq

NovaSeq 2x100 Paired-end

2x100 Paired-end

6/7/2019

6/13/2019

Post Run QC

94

Russo_001_16S_Run_2

MiSeq Standard

2x300 Version 3 Chemistry (16-22M Reads)

5/14/2019

6/3/2019

Post Run QC

95

Russo_001_16S_Run_3

MiSeq Standard

2x300 Version 3 Chemistry (16-22M Reads)

6/26/2019

Library Prep

96

Russo_001_16S_Run_4

MiSeq Standard

2x300 Version 3 Chemistry (16-22M Reads)

6/26/2019

Library Prep

97

Russo_001_ITS_Run_2

MiSeq Standard

2x300 Version 3 Chemistry (16-22M Reads)

6/26/2019

Library Prep

98

Russo_001_ITS_Run_3

MiSeq Standard

2x300 Version 3 Chemistry (16-22M Reads)

6/26/2019

Library Prep

99

Russo_001_ITS_Run_4

MiSeq Standard

2x300 Version 3 Chemistry (16-22M Reads)

6/26/2019

Library Prep

100

Salomon_001

Stowaway-Seq

2x300 Paired-end

5/17/2019

6/17/2019

Post Run QC

101

Sardi_002

MiSeq Standard

2x250 Version 2 Chemistry (8-12M Reads)

6/12/2019

6/19/2019

Post Run QC

102

Schlautman_004 (ReSeq)

NovaSeq 1x100 Single Read

1x100 Single Read

5/7/2019

6/14/2019

Post Run QC

103

Schroeder2_002

Stowaway-Seq

2x300 Paired-end

5/31/2019

6/17/2019

Post Run QC

104

Shannon2_002

NextSeq Standard

1x150 Mid (130M Reads)

6/21/2019

Library Prep

105

Shapiro_001_002

NovaSeq 1x100 Single Read

1x100 Single Read

5/20/2019

Delayed

106

Shapiro_003

NovaSeq 1x100 Single Read

1x100 Single Read

6/4/2019

Delayed

107

Shapiro_003_Nano_QC

MiSeq Standard

2x150 Nano Run (1M Reads)

6/5/2019

6/19/2019

Post Run QC

108

Shapiro_003_Nano_QC

MiSeq Standard

2x150 Nano Run (1M Reads)

6/5/2019

6/18/2019

Post Run QC

109

Sheik_012

NovaSeq 2x150 Paired-end

2x150 Paired-end

6/6/2019

6/19/2019

Post Run QC

110

Smanski_005

MiSeq Standard

111

Staley_020

NovaSeq 2x150 Paired-end

2x150 Paired-end

6/21/2019

Library Prep

112

Staley_026

Stowaway-Seq

2x300 Paired-end

6/14/2019

In Seq Queue

113

Starr_Project_088_PT_136

HiSeq 2500 10x Single-cell

10x Single-cell Paired-end SI 27x99 Libraries

4/30/2019

Library Prep

114

Starr_Project_088_PT_138

HiSeq 2500 10x Single-cell

10x Single-cell Paired-end SI 27x99 Libraries

4/30/2019

Library Prep

115

Thyagarajan_028_Run_10

NovaSeq 2x50 Paired-end

2x50 Paired-end

6/21/2019

Library Prep

116

Thyagarajan_028_Run_15

NovaSeq 2x50 Paired-end

2x50 Paired-end

6/21/2019

Library Prep

117

Thyagarajan_028_Run_22 (ReSeqx2)

NovaSeq 2x50 Paired-end

2x50 Paired-end

5/15/2019

6/15/2019

Post Run QC

118

Thyagarajan_028_Run_23

NovaSeq 2x50 Paired-end

2x50 Paired-end

6/21/2019

Library Prep

119

Tran_004

HiSeq 2500 2x50 Paired-end

2x50 Paired-end Libraries

6/19/2019

Library Prep

120

Travisano_021

NovaSeq 2x50 Paired-end

2x50 Paired-end

6/19/2019

Library Prep

121

Tretyakova_011

HiSeq 2500 2x50 Paired-end

2x50 Paired-end Libraries

6/13/2019

In Seq Queue

122

UMGC_565 and IL_020

NextSeq Standard

2x150 High (400M Reads)

6/14/2019

6/15/2019

Post Run QC

123

Vernick2_033

MiSeq Standard

2x250 Version 2 Chemistry (8-12M Reads)

6/17/2019

Library Prep

124

Wertheim_001

MiSeq Standard

2x300 Version 3 Chemistry (16-22M Reads)

6/19/2019

Library Prep

125

Young_054

HiSeq 2500 2x125 Paired-end

2x125 Paired-end Libraries

5/16/2019

6/4/2019

Post Run QC

126

127

128

129

130

131

132

133

134

135

136

137

138

139

140

141

142

143

144

145

146

147

148

149

150


1
2	NovaSeq Run Calendar				Questions? E-mail: next-gen@umn.edu
3
4	Flow cell position: A		Flow cell position: B		This is a web-published Google Sheet best viewed using Google Chrome or Apple Safari browsers. Firefox is not recommended.
5	Running		Running
6
7	Current Run				Explainer: The tables on the left report on current and queued runs in the two flow cell positions (A and B) on the Illumina NovaSeq 6000 Sequencer. The sequencer can run two flow cells at a time. SP, S1 and S2 flow cells have 2 lanes, while S4 flow cells have 4. One lane generates between 375M and 2250M reads, depending on which flow cell is used (SP, S1, S2 or S4) resulting in the lowest-cost NGS data available. To view the queue of samples that are currently being prepared for sequencing on Nova, click on the NovaSeq Sample Queue tab above.
8	Start	6/19/2019	Start	6/19/2019
9	End	6/20/2019	End	6/20/2019
10	Elapsed	Has been running for <1 day	Elapsed	Has been running for <1 day
11	Run Type	S1 2x100-bp Paired End DI	Run Type	S1 2x100-bp Paired End DI
12	Run ID	NovaSeq_Run_0151_06_19_19	Run ID	NovaSeq_Run_0152_06_19_19
13	Lane 1	Orr_031	Lane 1	Lim2_001_Superpool_Novaseq
14	Lane 2	Orr_031	Lane 2	Lim2_001_Superpool_Novaseq
15	Lane 3	NA	Lane 3	NA
16	Lane 4	NA	Lane 4	NA
17
18	Queued Run A1		Queued Run B1		Queued Run Notes: Note 1: For queued runs, the Est'd Start date will be entered once all lanes are filled, or at such time that we decide to sequence the flow cell despite the fact that it is only partially filled. Note 2: Clients may be able to accelerate the running of a partially-filled flow cell by requesting an expansion of their sequencing to fill the empty lanes. To discuss adding additional lanes to a queued flow cell, E-mail: next-gen@umn.edu. Note 3: Libraries shown in yellow are not yet on hand in the sequencer suite, but are expected imminently, and have therefore been mapped to a run. Note 4: Libraries shown in purple are CLIA libraries
19	Est'd Start	6/20/2019	Est'd Start	6/21/2019
20	Est'd End	6/21/2019	Est'd End	6/24/2019
21	Run Type	SP 2x50-bp Paired-End	Run Type	S2 2x150-bp Paired-End DI
22	Lane 1	Offer_001	Lane 1	MDL_Project_023
23	Lane 2	Marks_047	Lane 2	MDL_Project_023
24	Lane 3	NA	Lane 3	NA
25	Lane 4	NA	Lane 4	NA
26
27	Queued Run A2		Queued Run B2
28	Est'd Start	6/21/2019	Est'd Start
29	Est'd End	6/24/2019	Est'd End
30	Run Type	SP 2x250-bp Paired-End	Run Type
31	Lane 1	Hamilton2_016	Lane 1
32	Lane 2	Hamilton2_016	Lane 2
33	Lane 3	NA	Lane 3
34	Lane 4	NA	Lane 4
35
36	Queued Run A3		Queued Run B3
37	Est'd Start		Est'd Start
38	Est'd End		Est'd End
39	Run Type		Run Type
40	Lane 1		Lane 1
41	Lane 2		Lane 2
42	Lane 3		Lane 3
43	Lane 4		Lane 4
44
45	Queued Run A4		Queued Run B4
46	Est'd Start		Est'd Start
47	Est'd End		Est'd End
48	Run Type		Run Type
49	Lane 1		Lane 1
50	Lane 2		Lane 2
51	Lane 3		Lane 3
52	Lane 4		Lane 4


1
2	High-output HiSeq 2500 ("Franklin") Run Calendar		Questions? E-mail: next-gen@umn.edu
3
4	Flow cell position: A	Flow cell position: B	This is a web-published Google Sheet best viewed using Google Chrome or Apple Safari browsers. Firefox is not recommended.
5	Idle	Idle
6
7	Current Run	Current Run
8	Start	Start
9	End	End
10	Run Type	Run Type
11	Elapsed	Elapsed
12	Run ID	Run ID
13	Lane 1	Lane 1
14	Lane 2	Lane 2
15	Lane 3	Lane 3
16	Lane 4	Lane 4
17	Lane 5	Lane 5
18	Lane 6	Lane 6
19	Lane 7	Lane 7
20	Lane 8	Lane 8
21
22	Queued Run A1	Queued Run B1
23	Est'd Start	Est'd Start
24	Est'd End	Est'd End
25	Run Type	Run Type
26	Lane 1	Lane 1
27	Lane 2	Lane 2
28	Lane 3	Lane 3
29	Lane 4	Lane 4
30	Lane 5	Lane 5
31	Lane 6	Lane 6
32	Lane 7	Lane 7
33	Lane 8	Lane 8
34
35	Queued Run A2	Queued Run B2
36	Est'd Start	Est'd Start
37	Est'd End	Est'd End
38	Run Type	Run Type
39	Lane 1	Lane 1
40	Lane 2	Lane 2
41	Lane 3	Lane 3
42	Lane 4	Lane 4
43	Lane 5	Lane 5
44	Lane 6	Lane 6
45	Lane 7	Lane 7
46	Lane 8	Lane 8
47
48	Queued Run A3	Queued Run B3
49	Est'd Start	Est'd Start
50	Est'd End	Est'd End
51	Run Type	Run Type
52	Lane 1	Lane 1
53	Lane 2	Lane 2
54	Lane 3	Lane 3
55	Lane 4	Lane 4
56	Lane 5	Lane 5
57	Lane 6	Lane 6
58	Lane 7	Lane 7
59	Lane 8	Lane 8
60
61	Queued Run A4	Queued Run B4
62	Est'd Start	Est'd Start
63	Est'd End	Est'd End
64	Run Type	Run Type
65	Lane 1	Lane 1
66	Lane 2	Lane 2
67	Lane 3	Lane 3
68	Lane 4	Lane 4
69	Lane 5	Lane 5
70	Lane 6	Lane 6
71	Lane 7	Lane 7
72	Lane 8	Lane 8


1
2		NextSeq #1		NextSeq #2	Questions? E-mail: next-gen@umn.edu
3		Idle		Idle	This is a web-published Google Sheet best viewed using Google Chrome or Apple Safari browsers. Firefox is not recommended.
4
5	Current Run	Start	Current Run	Start
6		End		End
7		Read Length		Read Length	Explainer: The table on the left reports current and queued runs on the NextSeq. The NextSeq can run one flow cell at a time in various flexible length configurations and outputs (High-output, Mid-output, paired-end and single read). Each flow cell will be assigned a single client project except in the case of GBS pilot runs. These runs are assigned as shared runs by UMGC staff. NextSeq runs have a duration of 1 to 2 days and are ideal for small to mid-output NGS projects. Expedited runs are available on the platform for an expedited fee. To view the queue of samples that are currently being prepared for sequencing, click on the NextSeq Sample Queue tab above.
8		Queue Type		Queue Type
9		Projects		Projects
10
11	Queued Run #1	Start	Queued Run #1	Start
12		End		End
13		Read Length		Read Length
14		Queue Type		Queue Type
15		Projects		Projects
16
17	Queued Run #2	Start	Queued Run #2	Start
18		End		End
19		Read Length		Read Length
20		Queue Type		Queue Type
21		Projects		Projects
22
23	Queued Run #3	Start	Queued Run #3	Start
24		End		End
25		Read Length		Read Length
26		Queue Type		Queue Type
27		Projects		Projects


1
2		MiSeq #1 (Standard Sample Queue)		MiSeq #2 (Standard Sample Queue)		MiSeq #3 (VDL MiSeq) (Priority: VDL)		MiSeq #4 (Priority: Expedited Runs)		MiSeq #5 (Harris Lab MiSeq) (Priority: Harris Lab)
3		Running		Running		Idle		Running		Under Repair
4
5	Current Run	Start	6/19/2019	Start	6/19/2019	Start		Start	6/19/2019	Start
6		End	6/20/2019	End	6/20/2019	End		End	6/20/2019	End
7		Read Length	2x150 Nano Run (1M Reads)	Read Length	2x150 Nano Run (1M Reads)	Read Length		Read Length	2x150 Nano Run (1M Reads)	Read Length
8		Queue Type	Standard Sample Queue	Queue Type	Standard Sample Queue	Queue Type		Queue Type	Standard Sample Queue	Queue Type
9		Projects	10X_Nano_Pool_012_061819	Projects	10X_Nano_Pool_014_061819	Projects		Projects	10X_TCR_Pool_015_061919 (See Hart2_001Notes)	Projects
10
11	Queued Run #1	Start	6/20/2019	Start	6/20/2019	Start	6/21/2019	Start	6/20/2019	Start
12		End	6/21/2019	End	6/21/2019	End	6/24/2019	End	6/21/2019	End
13		Read Length	2x150 Nano Run (1M Reads)	Read Length	2x150 Nano Run (1M Reads)	Read Length	2x300 Version 3 Chemistry (16-22M Reads)	Read Length	2x150 Nano Run (1M Reads)	Read Length
14		Queue Type	Standard Sample Queue	Queue Type	Standard Sample Queue	Queue Type	VDL Sample Queue	Queue Type	Standard Sample Queue	Queue Type
15		Projects	MDL_023_Run_1	Projects	MDL_023_Run_2	Projects		Projects	10X_TCR_Pool_013_061819	Projects
16
17	Queued Run #2	Start	6/21/2019	Start	6/21/2019	Start		Start	6/21/2019	Start
18		End	6/24/2019	End	6/24/2019	End		End	6/24/2019	End
19		Read Length	2x300 Version 3 Chemistry (16-22M Reads)	Read Length	2x300 Version 3 Chemistry (16-22M Reads)	Read Length		Read Length	2x300 Version 3 Chemistry (16-22M Reads)	Read Length
20		Queue Type	Standard Sample Queue	Queue Type	Standard Sample Queue	Queue Type		Queue Type	Standard Sample Queue	Queue Type
21		Projects	Beattie_002_Run_1	Projects	Pieters_008_Run_1	Projects		Projects	Pieters_008_Run_1	Projects
22
23	Queued Run #3	Start		Start		Start		Start		Start
24		End		End		End		End		End
25		Read Length		Read Length		Read Length		Read Length		Read Length
26		Queue Type		Queue Type		Queue Type		Queue Type		Queue Type
27		Projects		Projects		Projects		Projects		Projects
28


1
2		iSeq #1 (Standard Sample Queue)	Questions? E-mail: next-gen@umn.edu
3		Idle	This is a web-published Google Sheet best viewed using Google Chrome or Apple Safari browsers. Firefox is not recommended.
4
5	Current Run	Start
6		End
7		Read Length	Explainer: The table on the left reports current and queued runs on the iSeq. The iSeq can run one flow cell at a time in a single 2x151-bp configuration. A 2x250-bp kit is expected to be available soon. iSeq runs have a duration of approximately 20 hours and are ideal for amplicon sequencing, targeted NGS applications and other low output NGS projects. Expedited runs are available on the platform for an expedited fee. To view the queue of samples that are currently being prepared for sequencing, click on the iSeq Sample Queue tab above. The iSeq is also our Do-It-Yourself Genomics instrument. If you would like to make and sequence your own libraries for convenience and faster turnaround, please see details on our DIY page (http://genomics.umn.edu/diy_iseq.php).
8		Queue Type
9		Projects
10
11	Queued Run #1	Start
12		End
13		Read Length
14		Queue Type
15		Projects
16
17	Queued Run #2	Start
18		End
19		Read Length
20		Queue Type
21		Projects
22
23	Queued Run #3	Start
24		End
25		Read Length
26		Queue Type
27		Projects


1
2	NovaSeq Sample Queue (Projects sequencing, or in queue for sequencing).																						This is a web-published Google Sheet best viewed using Google Chrome or Apple Safari browsers. Firefox is not recommended.
3
4	1x100-bp Single Read											2x50-bp Paired-end
5	Project	# of Lanes	Flow Cell Type	Loading Protocol	Est'd Lib Completion	Date Libraries R'cvd in CCRB	Project Status	Run Queue Position	# Lanes Filled	Est'd Run Date	Est'd Run Completion	Project	# of Lanes	Flow Cell Type	Loading Protocol	Est'd Lib Completion	Date Libraries R'cvd in CCRB	Project Status	Run Queue Position	# Lanes Filled	Est'd Run Date	Est'd Run Completion	Explainer:
6	Schlautman_004 (ReSeq)	2	SP	Standard	5/7/2019	5/23/2019	Post Run QC	History		6/13/2019	6/14/2019	Marks_047	1	SP	XP	5/31/2019	6/3/2019	In Seq Queue	A1	2/2	6/20/2019	6/21/2019	The tables on the left report currently sequencing -- and future -- NovaSeq sequencing libraries. We are currently only selling NovaSeq runs as single lanes or full flow cells. Fractional lanes are not allowed except for special UMGC internal service runs The availability of libraries determines the timing of queued NovaSeq runs, the planning of which is shown. The exact make-up of queued runs is liable to change depending on the timing of completion of libraries. PROJECT: the UMGC unique project ID, in format Investigator_### # OF LANES: the number of NovaSeq lanes requested EST'D LIB COMPLETION: the date when libraries are expected to complete library preparation and final QC. These include both UMGC-created and client-created libraries, and the estimated date may change due to a number of factors. DATE LIBRARIES R'CVD IN CCRB: the date on which the libraries were received in CCRB and made available for sequencing. Field turns yellow when date is 2 weeks past receipt and red when 3 weeks past receipt. If 3 weeks past and sequencing run has not launched, PI and Submitter will receive alternate options for sequencing via email. PROJECT STATUS: The current status of the libraries for the project. Status is described in detail on ILLUMINA NGS PROJECT HOME page. To view current sequencing run queue, see SEQUENCER RUNS tab for each platform at top of this page. # LANES FILLED: the number of lanes (out of 2 or 4 depending on flow cell type) that have been filled for queued runs. Green shading indicates a filled flow cell, whereas red shading indicates that there are too few libraries accumulated to permit the run to proceed. ESTIMATED RUN DATE: the date on which queued runs are estimated to be launched. ESTIMATED RUN COMPLETION: the date on which queued runs are estimated to complete. Data delivery is generally within 1-4 business days after completion.
7	Moeller_018	2	S1	Standard	5/15/2019	5/16/2019	Post Run QC	History		6/13/2019	6/14/2019	Offer_001	1	SP	XP	6/19/2019	6/12/2019	In Seq Queue	A1	2/2	6/20/2019	6/21/2019
8	Moeller_023	2	S1	Standard	6/5/2019	6/12/2019	Post Run QC	History		6/13/2019	6/19/2019	Thyagarajan_028_Run_22 (ReSeqx2)	2	S2	Standard	5/15/2019	6/11/2019	Post Run QC	History		6/14/2019	6/15/2019
9	Shapiro_001_002	2	S1	XP	5/20/2019	5/22/2019	Delayed	Unassigned	2/2			Duan_012	2	S1	Standard	5/31/2019	5/31/2019	Post Run QC	History		6/18/2019	6/19/2019
10	Shapiro_003	2	SP	Standard	6/4/2019		Delayed	Unassigned	2/2			Kikyo_062	1	SP	XP	6/14/2019	6/13/2019	In Seq Queue	Unassigned	1/2
11	GBS_Group_R	2	S1	XP	6/21/2019		Library Prep	Unassigned	2/2			Travisano_021	1	SP	XP	6/19/2019		Library Prep	Unassigned
12												Thyagarajan_028_Run_10	2	S2	Standard	6/21/2019		Library Prep	Unassigned	2/2
13												Thyagarajan_028_Run_15	2	S2	Standard	6/21/2019		Library Prep	Unassigned	2/2
14												Thyagarajan_028_Run_23	2	S2	Standard	6/21/2019		Library Prep	Unassigned	2/2
15
16
17
18
19
20
21
22
23
24
25
26
27
28	2x100-bp Paired-end											2x150-bp Paired-end
29	Project	# of Lanes	Flow Cell Type	Loading Protocol	Est'd Lib Completion	Date Libraries R'cvd in CCRB	Project Status	Run Queue Position	# Lanes Filled	Est'd Run Date	Est'd Run Completion	Project	# of Lanes	Flow Cell Type	Loading Protocol	Est'd Lib Completion	Date Libraries R'cvd in CCRB	Project Status	Run Queue Position	# Lanes Filled	Est'd Run Date	Est'd Run Completion
30	Orr_031	2	S1	Standard	5/7/2019	6/12/2019	In Seq Queue	A Running	2/2	6/19/2019	6/20/2019	MDL_Project_023	1	S2	XP	6/20/2019		Library Prep	B1	2/2	6/21/2019	6/23/2019
31	Lim2_001_Superpool_Novaseq	2	S1	Standard	6/6/2019	6/6/2019	In Seq Queue	B Running	2/2	6/19/2019	6/20/2019	McGaugh3_003	1	S4	XP	5/16/2019	5/16/2019	Post Run QC	History		6/17/2019	6/19/2019
32	Ruan_019_pool_1_NovaSeq	1	S2	XP	6/7/2019	6/10/2019	Post Run QC	History		6/12/2019	6/13/2019	Largaespada_127 Pool 1	1	SP	XP	6/6/2019	6/5/2019	Post Run QC	History		6/17/2019	6/18/2019
33	Ruan_019_pool_2_NovaSeq	1	S2	XP	6/7/2019	6/10/2019	Post Run QC	History		6/12/2019	6/13/2019	Largaespada_127 Pool 2	1	SP	XP	6/6/2019	6/5/2019	Post Run QC	History		6/17/2019	6/18/2019
34												Noyes_004	1	SP	XP	6/6/2019	6/6/2019	Post Run QC	History		6/13/2019	6/19/2019
35												Sheik_012	1	SP	XP	6/6/2019	6/6/2019	Post Run QC	History		6/13/2019	6/19/2019
36												Blekhman_031	3	S4	XP	6/12/2019	6/13/2019	Post Run QC	History		6/17/2019	6/19/2019
37												Gomez_007 Pilot	1	SP	XP	5/15/2019	5/15/2019	In Seq Queue	Unassigned	2/2
38												Marks_050	1	S4	XP	5/24/2019	5/24/2019	In Seq Queue	Unassigned	1/4
39												Koob_004	1	S1	XP	6/20/2019	6/10/2019	In Seq Queue	Unassigned	1/2
40												Marks_048	1	SP	XP	6/20/2019	6/10/2019	In Seq Queue	Unassigned	2/2	6/24/2019	6/25/2019
41												Dunny_048 (ReSeqx2)	1	SP	XP	4/16/2019		Library Prep	Unassigned	2/2
42												Jameson_Project_020_GEX_FL	1	S1	XP	6/14/2019		Library Prep	Unassigned	2/2
43												Jameson_Project_020_TCR_FL	1	S1	XP	6/14/2019		Library Prep	Unassigned	2/2
44												Marks_052	1	S1	XP	6/17/2019		Library Prep	Unassigned
45												Johnson_091/Johnson_094	1	S2	XP	6/19/2019		Library Prep	Unassigned
46												Kimball_003	1	SP	XP	6/20/2019		Library Prep	Unassigned
47												Staley_020	1	SP	XP	6/21/2019		Library Prep	Unassigned
48												Farrar_029	1	SP	XP	6/21/2019		Library Prep	Unassigned	2/2	6/24/2019	6/25/2019
49												Figueroa_006	2	S2	Standard	7/4/2019		Library Prep	Unassigned
50
51
52	2x250-bp Paired-end											Reserved For Future Run Configuration
53	Project	# of Lanes	Flow Cell Type	Loading Protocol	Est'd Lib Completion	Date Libraries R'cvd in CCRB	Project Status	Run Queue Position	# Lanes Filled	Est'd Run Date	Est'd Run Completion	Project	# of Lanes	Flow Cell Type	Loading Protocol	Est'd Lib Completion	Date Libraries R'cvd in CCRB	Project Status	Run Queue Position	# Lanes Filled	Est'd Run Date	Est'd Run Completion
54	Hamilton2_016	2	SP	XP	6/6/2019	6/6/2019	In Seq Queue	A2	2/2	6/21/2019	6/24/2019
55	PepsiCo_301	2	SP	XP	6/12/2019	6/12/2019	In Seq Queue	Unassigned	2/2
56	PepsiCo_302	2	SP	XP	6/21/2019		Library Prep	Unassigned	2/2
57
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61
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74


1
2	HiSeq 2500 High-output Sample Queue (Projects sequencing, or in queue for sequencing on "Franklin")																		This is a web-published Google Sheet best viewed using Google Chrome or Apple Safari browsers. Firefox is not recommended.
3
4	1x50-bp Single Read Libraries									2x50-bp Paired-end Libraries
5	Project	# of Lanes	Est'd Lib Completion	Date Libraries R'cvd in CCRB	Project Status	Run Queue Position	# Lanes Filled	Est'd Run Date	Est'd Run Completion	Project	# of Lanes	Est'd Lib Completion	Date Libraries R'cvd in CCRB	Project Status	Run Queue Position	# Lanes Filled	Est'd Run Date	Est'd Run Completion	Explainer:
6										Anderson2_035 (100SR)	8	6/4/2019	6/3/2019	Post Run QC	History	8/8	6/7/2019	6/11/2019	The tables on the left report currently sequencing -- and future -- high-output sequencing libraries. The availability of libraries determines the timing of queued HiSeq 2500 runs, the planning of which is shown. The exact make-up of queued runs is liable to change depending on the timing of completion of libraries. PROJECT: the UMGC unique project ID, in format Investigator_### # OF LANES: the number of high-output lanes requested EST'D LIB COMPLETION: the date when libraries are expected to complete library preparation and final QC. These include both UMGC-created and client-created libraries, and the estimated date may change due to a number of factors. DATE LIBRARIES R'CVD IN CCRB: the date on which the libraries were received in CCRB and made available for sequencing. Field turns yellow when date is 2 weeks past receipt and red when 3 weeks past receipt. If 3 weeks past and sequencing run has not launched, PI and Submitter will receive alternate options for sequencing via email. PROJECT STATUS: The current status of the libraries for the project. Status is described in detail on ILLUMINA NGS PROJECT HOME page. To view current sequencing run queue, see SEQUENCER RUNS tab for each platform at top of this page. # LANES FILLED: the number of lanes (out of 8) that have been filled for queued runs. Green shading indicated a filled flow cell, whereas red shading indicated that there are too few libraries accumulated to permit the run to proceed. Yellow shading indicates a flow cell that is 6/8 or 7/8 full, and that we may decide to sequence if the libraries have been waiting a long time in queue. ESTIMATED RUN DATE: the date on which queued runs are estimated to be launched. ESTIMATED RUN COMPLETION: the date on which queued runs are estimated to complete. Data delivery is generally within 1-4 business days after completion.
7										Igarashi_015	0.5	5/29/2019	5/29/2019	In Seq Queue	Unassigned	8/8
8										Tretyakova_011	2	6/13/2019	6/13/2019	In Seq Queue	Unassigned	8/8
9										Braunlin_008	1.5	6/24/2019	6/13/2019	In Seq Queue	Unassigned	8/8
10										Kobayashi2_005	1	6/25/2019	6/12/2019	In Seq Queue	Unassigned	8/8
11										Tran_004	2	6/19/2019		Library Prep	Unassigned	8/8
12										Anderson2_034 (100SR)	5	6/4/2019		Library Prep	Unassigned	5/8
13										Lawrence2_001	2	6/27/2019		Library Prep	Unassigned
14
15
16
17
18
19
20
21
22
23
24
25
26
27	10x Single-cell Paired-end SI 27x99-bp Libraries									2x125-bp Paired-end Libraries
28	Project	# of Lanes	Est'd Lib Completion	Date Libraries R'cvd in CCRB	Project Status	Run Queue Position	# Lanes Filled	Est'd Run Date	Est'd Run Completion	Project	# of Lanes	Est'd Lib Completion	Date Libraries R'cvd in CCRB	Project Status	Run Queue Position	# Lanes Filled	Est'd Run Date	Est'd Run Completion
29	Starr_Project_088_PT_136	1	4/30/2019		Library Prep	Unassigned				Phelps_022 Pool 4	0.5	4/9/2019	4/9/2019	Post Run QC	History	8/8	5/31/2019	6/4/2019
30	Starr_Project_088_PT_138	1	4/30/2019		Library Prep	Unassigned				Phelps_022 Pool 5	0.5	4/9/2019	4/9/2019	Post Run QC	History	8/8	5/31/2019	6/4/2019
31										Phelps_023	1	5/15/2019	5/15/2019	Post Run QC	History	8/8	5/31/2019	6/4/2019
32										Goyal_032	1	5/15/2019	5/15/2019	Post Run QC	History	8/8	5/31/2019	6/4/2019
33										Young_054	1	5/16/2019	5/17/2019	Post Run QC	History	8/8	5/31/2019	6/4/2019
34										Goyal_031	1	5/29/2019	5/29/2019	Post Run QC	History	8/8	5/31/2019	6/4/2019
35										Ferrieri_001	1	5/29/2019	5/29/2019	Post Run QC	History	8/8	5/31/2019	6/4/2019
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
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52
53
54
55
56
57
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65


1
2	NextSeq Standard Sample Queue										NextSeq Expedited Sample Queue For clients who need more rapid turnaround, this queue can be accessed for an additional fee.										This is a web-published Google Sheet best viewed using Google Chrome or Apple Safari browsers. Firefox is not recommended.
3
4	Project	Run Type	# of Lanes	Est'd Lib Completion	Date Libraries R'cvd in CCRB	Project Status	Queue Position	Est'd Run Date	Est'd Run Completion	NextSeq #	Project	Run Type	# of Lanes	Est'd Lib Completion	Date Libraries R'cvd in CCRB	Project Status	Queue Position	Est'd Run Date	Est'd Run Completion	NextSeq #	Explainer:
5	McGaugh3_004	1x150 Mid (130M Reads)	1	6/7/2019	6/7/2019	Post Run QC	History	6/12/2019	6/13/2019	NextSeq #1											The tables on the left report currently sequencing -- and future -- NextSeq sequencing libraries. We are currently only selling NextSeq runs as full flow cells (i.e. no shared runs or fractional runs). The availability of libraries determines the timing of queued NextSeq runs, the planning of which is shown. PROJECT: the UMGC unique project ID, in format Investigator_### # OF LANES: currently always 1. EST'D LIB COMPLETION: the date when libraries are expected to complete library preparation and final QC. These include both UMGC-created and client-created libraries, and the estimated date may change due to a number of factors. DATE LIBRARIES R'CVD IN CCRB: the date on which the libraries were received in CCRB and made available for sequencing. Field turns yellow when date is 2 weeks past receipt and red when 3 weeks past receipt. If 3 weeks past and sequencing run has not launched, PI and Submitter will receive alternate options for sequencing via email. PROJECT STATUS: The current status of the libraries for the project. Status is described in detail on ILLUMINA NGS PROJECT HOME page. To view current sequencing run queue, see SEQUENCER RUNS tab for each platform at top of this page. ESTIMATED RUN DATE: the date on which queued runs are estimated to be launched. ESTIMATED RUN COMPLETION: the date on which queued runs are estimated to complete. Data delivery is generally within 2-4 business days after completion.
6	Deng3_003	1x150 High (400M Reads)	1	6/12/2019	6/13/2019	Post Run QC	History	6/17/2019	6/18/2019	NextSeq #1
7	UMGC_565 and IL_020	2x150 High (400M Reads)	1	6/14/2019	6/13/2019	Post Run QC	History	6/13/2019	6/15/2019	NextSeq #2
8	GBS_Group_T	1x150 High (400M Reads)	1	6/17/2019	6/14/2019	Post Run QC	History	6/18/2019	6/19/2019	NextSeq #1
9	Alejandro_004 (Reseq)	2x75 High (400M Reads)	1	6/17/2019	6/14/2019	Post Run QC	History	6/18/2019	6/19/2019	NextSeq #2
10	Garry_073	1x75 High (400M Reads)	1	6/18/2019	6/13/2019	Post Run QC	History	6/17/2019	6/18/2019	NextSeq #2
11	Abreu_007	2x150 Mid (130M Reads)	1	6/25/2019	6/12/2019	Post Run QC	History	6/13/2019	6/15/2019	NextSeq #1
12	Marks_049	2x75 High (400M Reads)	1	6/20/2019		Library Prep	Unassigned
13	Shannon2_002	1x150 Mid (130M Reads)	1	6/21/2019		Library Prep	Unassigned
14	Bushley_033	1x75 High (400M Reads)	1	6/24/2019		Library Prep	Unassigned
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31		# Future Lanes	10									# Future Lanes	0


2
3	Standard Libraries (First-come, First-served, MiSeqs #1-#2) Standard runs are ordinarily scheduled on MiSeq #1 or #2, but may be run on MiSeqs #3- #5 if those instruments are open.										Veterinary Diagnostic Lab (VDL) Libraries (MiSeq #3) VDL samples receive priority on MiSeq #3, which is owned by the VDL and operated by the UMGC. MiSeq #3 is used for "Standard" runs only when the VDL does not have libraries ready for sequencing.											Expedited Libraries (MiSeq #4) For clients who need more rapid turnaround, MiSeq #4 -- un unsubsidized instrument -- is reserved for their use. Although runs on MiSeq #4 are about 50% more expensive than on MiSeq #1 or #2, there is typically no queue to get on the instrument. MiSeq #4 is used for "Standard" runs only when there are no expedited libraries ready for sequencing.										Harris Lab Libraries (MiSeq #5) Harris Lab samples receive priority on MiSeq #5, which is owned by Dr. Harris and operated by the UMGC. MiSeq #5 is used for "Standard" runs only when the Harris lab does not have libraries ready for sequencing.
4
5	Project	Run Type	# of Lanes	Est'd Lib Completion	Date Libraries R'cvd in CCRB	Project Status	Queue Position	Est'd Run Date	Est'd Run Completion	MiSeq #	Project	Run Type	# of Lanes	Est'd Lib Completion	Date Libraries R'cvd in CCRB	VDL Priority	Project Status	Queue Position	Est'd Run Date	Est'd Run Completion	MiSeq #	Project	Run Type	# of Lanes	Est'd Lib Completion	Date Libraries R'cvd in CCRB	Project Status	Queue Position	Est'd Run Date	Est'd Run Completion	MiSeq #	Project	Run Type	# of Lanes	Est'd Lib Completion	Date Libraries R'cvd in CCRB	Project Status	Queue Position	Est'd Run Date	Est'd Run Completion	MiSeq #
6	10X_Nano_Pool_012_061819	2x150 Nano Run (1M Reads)	1	6/18/2019	6/18/2019	Sequencing	1. Running	6/19/2019	6/20/2019	MiSeq #1	Mor_116	2x250 Version 2 Chemistry (8-12M Reads)	1				Sequencing	History	6/14/2019	6/16/2019	MiSeq #3
7	10X_Nano_Pool_014_061819	2x150 Nano Run (1M Reads)	1	6/18/2019	6/18/2019	Sequencing	1. Running	6/19/2019	6/20/2019	MiSeq #2
8	10X_TCR_Pool_015_061919 (See Hart2_001Notes)	2x150 Nano Run (1M Reads)	1	6/19/2019	6/19/2019	Sequencing	1. Running	6/19/2019	6/20/2019	MiSeq #4
9	MDL_023_Run_1	2x150 Nano Run (1M Reads)	1	6/20/2019		Library Prep	2. Queued Run #1	6/20/2019	6/21/2019	MiSeq #1
10	MDL_023_Run_2	2x150 Nano Run (1M Reads)	1	6/20/2019		Library Prep	2. Queued Run #1	6/20/2019	6/21/2019	MiSeq #2
11	10X_TCR_Pool_013_061819	2x150 Nano Run (1M Reads)	1	6/18/2019	6/18/2019	In Seq Queue	2. Queued Run #1	6/20/2019	6/21/2019	MiSeq #4
12	Beattie_002_Run_1	2x300 Version 3 Chemistry (16-22M Reads)	1	6/20/2019		Library Prep	3. Queued Run #2	6/21/2019	6/24/2019	MiSeq #1
13	Pieters_008	2x300 Version 3 Chemistry (16-22M Reads)	1	6/21/2019		Library Prep	3. Queued Run #2	6/21/2019	6/24/2019	MiSeq #2
14	Pieters_008	2x300 Version 3 Chemistry (16-22M Reads)	1	6/21/2019		Library Prep	3. Queued Run #2	6/21/2019	6/24/2019	MiSeq #4
15	Ro_001	2x300 Version 3 Chemistry (16-22M Reads)	1	5/29/2019	5/29/2019	Post Run QC	History	5/31/2019	6/3/2019	MiSeq #1
16	Gorr_029	2x250 Version 2 Chemistry (8-12M Reads)	1	6/5/2019	6/13/2019	Post Run QC	History	6/17/2019	6/19/2019	MiSeq #1
17	Sardi_002	2x250 Version 2 Chemistry (8-12M Reads)	1	6/12/2019	6/10/2019	Post Run QC	History	6/17/2019	6/19/2019	MiSeq #2
18	Munderloh_005 (ReSeq)	2x250 Version 2 Chemistry (8-12M Reads)	1	6/12/2019	6/12/2019	Post Run QC	History	6/14/2019	6/16/2019	MiSeq #2
19	PepsiCo_Project_229 (ReSeq)	2x150 Micro Run (4M Reads)	1	5/28/2019	6/7/2019	Post Run QC	History	6/12/2019	6/13/2019	MiSeq #4
20	Shapiro_003_Nano_QC	2x150 Nano Run (1M Reads)	1	6/5/2019	6/14/2019	Post Run QC	History	6/18/2019	6/19/2019	MiSeq #4
21	Iezzoni_001_Nano_QC	2x150 Nano Run (1M Reads)	1	6/7/2019	6/13/2019	Post Run QC	History	6/17/2019	6/18/2019	MiSeq #4
22	MySeq_Stowaway_071	2x300 Version 3 Chemistry (16-22M Reads)	1	6/14/2019	6/13/2019	Post Run QC	History	6/13/2019	6/16/2019	MiSeq #4
23	Russo_001_16S_Run_2	2x300 Version 3 Chemistry (16-22M Reads)	1	5/14/2019	5/28/2019	Post Run QC	History	5/30/2019	6/3/2019	MiSeq #5
24	Orr_031_Nano_QC	2x150 Nano Run (1M Reads)	1	5/30/2019	5/24/2019	Post Run QC	History	5/29/2019	5/30/2019	MiSeq #5
25	Shapiro_003_Nano_QC	2x150 Nano Run (1M Reads)	1	6/5/2019	6/14/2019	Post Run QC	History	6/17/2019	6/18/2019	MiSeq #5
26	Munderloh_005 (ReSeqx2)	2x250 Version 2 Chemistry (8-12M Reads)	1	6/12/2019	6/19/2019	In Seq Queue	Unassigned
27	Perlingeiro_059 (ReSeqx2)	2x75 Version 3 Chemistry (16-22M Reads)	1	6/3/2019		Library Prep	Unassigned
28	Vernick2_033	2x75 Version 3 Chemistry (16-22M Reads)	1	6/12/2019		Library Prep	Unassigned
29	Lee7_001	2x250 Version 2 Chemistry (8-12M Reads)	1	6/17/2019		Library Prep	Unassigned
30	Johnson_090/094	2x150 Nano Run (1M Reads)	1	6/18/2019		Library Prep	Unassigned
31	Wertheim_001	2x300 Version 3 Chemistry (16-22M Reads)	1	6/19/2019		Library Prep	Unassigned
32	Paulitz_003	2x300 Version 3 Chemistry (16-22M Reads)	1	6/19/2019		Library Prep	Unassigned
33	Beattie_002_Run_2	2x300 Version 3 Chemistry (16-22M Reads)	1	6/20/2019		Library Prep	Unassigned
34	Beattie_002_Run_3	2x300 Version 3 Chemistry (16-22M Reads)	1	6/20/2019		Library Prep	Unassigned
35	Beattie_002_Run_4	2x300 Version 3 Chemistry (16-22M Reads)	1	6/20/2019		Library Prep	Unassigned
36	Beattie_002_Run_5	2x300 Version 3 Chemistry (16-22M Reads)	1	6/20/2019		Library Prep	Unassigned
37	Beattie_002_Run_6	2x300 Version 3 Chemistry (16-22M Reads)	1	6/20/2019		Library Prep	Unassigned
38	Gale_020_Run_1	2x250 Version 2 Chemistry (8-12M Reads)	1	6/20/2019		Library Prep	Unassigned
39	Gale_020_Run_2	2x250 Version 2 Chemistry (8-12M Reads)	1	6/20/2019		Library Prep	Unassigned
40	Gale_020_Run_3	2x250 Version 2 Chemistry (8-12M Reads)	1	6/20/2019		Library Prep	Unassigned
41	Kimball_002	2x250 Nano Run (1M Reads)	1	6/20/2019		Library Prep	Unassigned
42	Harris	2x75 Version 3 Chemistry (16-22M Reads)	1	6/20/2019		Library Prep	Unassigned
43	Russo_001_16S_Run_3	2x300 Version 3 Chemistry (16-22M Reads)	1	6/26/2019		Library Prep	Unassigned
44	Russo_001_16S_Run_4	2x300 Version 3 Chemistry (16-22M Reads)	1	6/26/2019		Library Prep	Unassigned
45	Russo_001_ITS_Run_2	2x300 Version 3 Chemistry (16-22M Reads)	1	6/26/2019		Library Prep	Unassigned
46	Russo_001_ITS_Run_3	2x300 Version 3 Chemistry (16-22M Reads)	1	6/26/2019		Library Prep	Unassigned
47	Russo_001_ITS_Run_4	2x300 Version 3 Chemistry (16-22M Reads)	1	6/26/2019		Library Prep	Unassigned
48	Figueroa_006	2x150 Nano Run (1M Reads)	1	7/4/2019		Library Prep	Unassigned
49	Smanski_005	2x75 Version 3 Chemistry (16-22M Reads)	1			Library Prep	Unassigned
50
51
52
53		# Future Lanes	44									# Future Lanes	0										# Future Lanes	0									# Future Lanes	0


1
2	iSeq Standard Libraries									iSeq Expedited Libraries For clients who need more rapid turnaround, this queue can be accessed for an additional fee.									This is a web-published Google Sheet best viewed using Google Chrome or Apple Safari browsers. Firefox is not recommended.
3
4	Project	Run Type	# of Lanes	Est'd Lib Completion	Date Libraries R'cvd in CCRB	Project Status	Queue Position	Est'd Run Date	Est'd Run Completion	Project	Run Type	# of Lanes	Est'd Lib Completion	Date Libraries R'cvd in CCRB	Project Status	Queue Position	Est'd Run Date	Est'd Run Completion	Explainer:
5																			The tables on the left report currently sequencing -- and future -- iSeq sequencing libraries. We are currently only selling NextSeq runs as full flow cells (i.e. no shared runs or fractional runs). The availability of libraries determines the timing of queued iSeq runs, the planning of which is shown. PROJECT: the UMGC unique project ID, in format Investigator_### # OF LANES: currently always 1. EST'D LIB COMPLETION: the date when libraries are expected to complete library preparation and final QC. These include both UMGC-created and client-created libraries, and the estimated date may change due to a number of factors. DATE LIBRARIES R'CVD IN CCRB: the date on which the libraries were received in CCRB and made available for sequencing. Field turns yellow when date is 2 weeks past receipt and red when 3 weeks past receipt. If 3 weeks past and sequencing run has not launched, PI and Submitter will receive alternate options for sequencing via email. PROJECT STATUS: The current status of the libraries for the project. Status is described in detail on ILLUMINA NGS PROJECT HOME page. To view current sequencing run queue, see SEQUENCER RUNS tab for each platform at top of this page. ESTIMATED RUN DATE: the date on which queued runs are estimated to be launched. ESTIMATED RUN COMPLETION: the date on which queued runs are estimated to complete. Data delivery is generally within 1-3 business days after completion.
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26		# Future Lanes	0								# Future Lanes	0


1
2	Stowaway-Seq Run Calendar.
3	Stowaway-Seq (2x300 PE MiSeq Runs) Stowaway-Seq is a service designed to provide shallow (≤ 2M reads), low-cost ($299.09) sequencing for small-scale pilot experiments. We achieve this by a) pooling projects from many different users, b) managing the addition of indexing barcodes to ensure that pooled libraries are compatible, and c) running all projects using a read length (2x300-bp PE) that encompasses any desired sequencing flavor. Please read FAQs below for more information, contact Corbin Dirkx (micbiom@umn.edu, 16S samples or amplicons) or Aaron Becker (becke044@umn.edu, other library types).
4
5	Run Date and Status			Submission Cutoff Dates For Client-made Libraries		Submission Cutoff Dates For Amplicons or 16S Samples (Important: See FAQ #1!)		Run Details
6	Scheduled Run Date	Days Until Run	Status	Cutoff Date	Days Remaining Until Cutoff Date	Cutoff Date	Days Remaining Until Cutoff Date	Project	Project Status	# of 1/8th Lanes Requested	Est'd Lib Completion	Date Libraries received in CCRB	Est'd Run Completion	MiSeq #
7	Friday, 06-14-19	Will launch in -5 days.	Completed	Friday, 05-31-19	Cutoff date is past. This Stowaway-Seq run is closed.	Friday, 05-17-19	Cutoff date is past. This Stowaway-Seq run is closed for amplicon/16S sample submission.	Beck_002	Post Run QC	1	5/17/2019	5/17/2019	6/17/2019	MiSeq #4
8								Salomon_001	Post Run QC	1	5/17/2019	5/17/2019	6/17/2019
9								Geraghty_006	Post Run QC	1	5/31/2019	6/10/2019	6/17/2019
10								Schroeder2_002	Post Run QC	1	5/31/2019	6/12/2019	6/17/2019
11								O'Grady_007	Post Run QC	3	5/31/2019	5/29/2019	6/17/2019
12
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15	Friday, 07-05-19	Will launch in 16 days.		Friday, 06-21-19	You have 2 days remaining to submit client-made libraries.	Friday, 06-07-19	Cutoff date is past. This Stowaway-Seq run is closed for amplicon/16S sample submission.	Staley_026	In Seq Queue	1	6/14/2019	6/14/19
16								Alanabeh_001	In Seq Queue	1	6/14/2019	6/14/19
17								Murray3_002	In Seq Queue	1	6/14/2019	6/14/2019
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23	Friday, 07-26-19	Will launch in 37 days.		Friday, 07-12-19	You have 23 days remaining to submit client-made libraries.	Friday, 06-28-19	You have 9 days remaining to submit amplicons or 16S samples.
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31	Friday, 08-16-19	Will launch in 58 days.		Friday, 08-02-19	You have 44 days remaining to submit client-made libraries.	Friday, 07-19-19	You have 30 days remaining to submit amplicons or 16S samples.
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39	Friday, 09-06-19	Will launch in 79 days.		Friday, 08-23-19	You have 65 days remaining to submit client-made libraries.	Friday, 08-09-19	You have 51 days remaining to submit amplicons or 16S samples.
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48	FAQ:
49	1) How much space can I request?
50	You may request increments of 1/8th of a MiSeq Lane to a maximum of 4 "lanes", if space allows. UMGC staff reserves the right to limit lane requests to a single "lane" per run, per user when high request volumes occur. If a large number of submissions are received, we will create multiple stowaway runs for a given submission period.
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52	2) What are the charges?
53	UMGC will charge users in increments of 1/8th of a lane ($299.09 per 1/8 th of a lane) requested.
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55	3) What samples are acceptable?
56	Libraries that have been indexed and pooled will be accepted two weeks before the Stowaway-Seq run date. We may accept samples for library creation for Stowaway service (e.g., amplicons or 16S samples), but ONLY when prior approval has been obtained, with enough time for the library creation to occur.
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58	4) Do you perform QC on libraries?
59	Yes. We perform Kapa QC on samples to ensure functional library.
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61	5) What is the deadline for submission?
62	For client-made libraries, the cut-off for submission is at least 14 days prior to the scheduled run. For amplicons and 16S samples, the cut-off for submission is at least 28 days prior to the scheduled run.
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64	6) Can I request Expedited Service for a Stowaway run?
65	No. The purpose of Stowaway-Seq is not speed, but low cost. The runs are scheduled in advance and guaranteed to run on the scheduled date, in order to provide a reliable, low-cost option for all.
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67	7) How do I request this service?
68	Please refer to this Google Doc to see the availibility of the next run.
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70	8) How can I know what barcodes to use for my samples – so that they do not overlap with another researcher’s barcodes?
71	Please email next-gen@umn.edu with your intended barcodes. We will check it against others currently in the run and notify you.
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73	9) What if I miss the deadline for submission?
74	UMGC will try to accommodate your request on the next scheduled run provided there is no barcode conflict.
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76	10) This is great, but I can't seem to get on a Stowaway-Seq run because they fill up too fast, and my submission type is of low priority according to your policies!!!
77	We have the ability to increase the frequency of Stowaway-Seq runs, and will do so if we find that demand justifies it.
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79	11) I still have questions. Who can I contact?
80	Please contact the Aaron Becker (Illumina Sequencing Services Manager) at becke044@umn.edu for questions regarding client-made library submission, or Corbin Dirkx (High-throughput Sequencing Services Manager) at micbiom@umn.edu for questions regarding amplicon or 16S sample submission.