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2 | Illumina NGS Project Home | Questions? E-mail: next-gen@umn.edu. This is a web-published Google Sheet best viewed using Google Chrome or Apple Safari browsers. Firefox is not recommended. | |||||||
3 | This "Dashboard" page serves as a simplifed version of the UMGC Sequencer Home Sample and Run Queues. See the explainer at right for more details. | ||||||||
4 | |||||||||
5 | Project | Sample Queue | Run Type | Est'd Lib Completion | Est'd Run Completion | Project Status | |||
6 | #REF! | MiSeq VDL | #REF! | 4/17/2021 | #REF! | ||||
7 | 10X_Nano_Pool_070_040921 | MiSeq Standard | 2x150 Nano Run (1M Reads) | 4/9/2021 | 4/20/2021 | In Seq Queue | |||
8 | Bindels_010 | MiSeq Standard | 2x300 Version 3 Chemistry (16-22M Reads) | 4/2/2021 | 4/12/2021 | Post Run QC | |||
9 | Bold_002_003_TCR_NovaSeq_Pool | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 3/29/2021 | 4/21/2021 | In Seq Queue | |||
10 | Ciappesoni_001 | NovaSeq 1x100 Single Read | 1x100 Single Read | 4/21/2021 | Library Prep | ||||
11 | Coyne_003 | NovaSeq 1x100 Single Read | 1x100 Single Read | 4/23/2021 | Library Prep | ||||
12 | Cressler_002 | NovaSeq 2x50 Paired-end | 2x50 Paired-end | 3/29/2021 | In Seq Queue | ||||
13 | CWGS_025 (MDL_126) | MiSeq Standard | 2x150 Nano Run (1M Reads) | 4/15/2021 | 4/16/2021 | Post Run QC | |||
14 | CWGS_025 (MDL_126) | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 4/16/2021 | 4/18/2021 | Sequencing | |||
15 | Dehm_070 | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 4/28/2021 | Library Prep | ||||
16 | Dehm_071 | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 5/10/2021 | Library Prep | ||||
17 | Ebner2_002 | Stowaway-Seq | 2x300 Paired-end | 3/25/2021 | 3/29/2021 | Post Run QC | |||
18 | Endelman_015 | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 4/21/2021 | Library Prep | ||||
19 | Ezzat_003 | Stowaway-Seq | 2x300 Paired-end | 3/11/2021 | 3/29/2021 | Post Run QC | |||
20 | Falcao-Salles_008 | MiSeq Standard | 2x300 Version 3 Chemistry (16-22M Reads) | 4/2/2021 | 4/8/2021 | Post Run QC | |||
21 | Farrar_038_CU_Reseq_Pool | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 3/24/2021 | Library Prep | ||||
22 | Fok_002 / Klatt_026 | Stowaway-Seq | 2x300 Paired-end | ||||||
23 | GBS_Group_D | NovaSeq 1x100 Single Read | 1x100 Single Read | 4/16/2021 | Library Prep | ||||
24 | GBS_Group_G | NovaSeq 1x100 Single Read | 1x100 Single Read | 4/16/2021 | Library Prep | ||||
25 | GBS_Group_H | NextSeq Standard | 1x150 High (400M Reads) | 4/16/2021 | Library Prep | ||||
26 | GBS_Group_K | NextSeq Standard | 1x150 Mid (130M Reads) | 4/16/2021 | Library Prep | ||||
27 | Gomez2_001_ReSeq | Stowaway-Seq | 2x300 Paired-end | ||||||
28 | Gomez_019 | MiSeq Standard | 2x300 Version 3 Chemistry (16-22M Reads) | 4/2/2021 | 4/16/2021 | Post Run QC | |||
29 | Gradilone_009 | NextSeq Standard | 2x75 High (400M Reads) | 4/16/2021 | Library Prep | ||||
30 | Gutknecht_001 | Stowaway-Seq | 2x300 Paired-end | ||||||
31 | Hamilton2_024 | Stowaway-Seq | 2x300 Paired-end | 3/26/2021 | 3/29/2021 | Post Run QC | |||
32 | Hamilton2_025 | Stowaway-Seq | 2x300 Paired-end | 3/26/2021 | 3/29/2021 | Post Run QC | |||
33 | Hare_Project_003 | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 4/10/2021 | Library Prep | ||||
34 | Hussey_002 | MiSeq Standard | 2x250 Version 2 Chemistry (8-12M Reads) | 4/2/2021 | 4/15/2021 | Post Run QC | |||
35 | Jameson_029_Novaseq_Pool | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 4/8/2021 | In Seq Queue | ||||
36 | Ji_009 | NextSeq Standard | 2x75 Mid (130M Reads) | 4/13/2021 | 4/16/2021 | Post Run QC | |||
37 | Ji_009 (ReSeq) | NextSeq Standard | 2x75 Mid (130M Reads) | 4/16/2021 | 4/20/2021 | In Seq Queue | |||
38 | Kang2_002 | Stowaway-Seq | 2x300 Paired-end | 3/26/2021 | 3/29/2021 | Post Run QC | |||
39 | Kashyap_017_Pool_2 | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 4/27/2021 | Library Prep | ||||
40 | Kennedy_021 | Stowaway-Seq | 2x300 Paired-end | Library Prep | |||||
41 | Koob_016 | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 4/26/2021 | 4/21/2021 | In Seq Queue | |||
42 | Langlois_044 | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 4/21/2021 | Library Prep | ||||
43 | Largaespada_136 | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 4/28/2021 | Library Prep | ||||
44 | Largaespada_136_Nano_QC | MiSeq Standard | 2x150 Nano Run (1M Reads) | 4/23/2021 | |||||
45 | LeBrasseur_002 | Stowaway-Seq | 2x300 Paired-end | 3/26/2021 | 3/29/2021 | Post Run QC | |||
46 | Lillo_002/Gollamudi_002/Goemann_002 | Stowaway-Seq | 2x300 Paired-end | 3/26/2021 | 3/29/2021 | Post Run QC | |||
47 | Lozada_005 | NovaSeq 1x100 Single Read | 1x100 Single Read | 4/23/2021 | Library Prep | ||||
48 | Lund_007 | NextSeq Standard | 2x75 Mid (130M Reads) | 4/16/2021 | Library Prep | ||||
49 | MDH_Project_005 | NovaSeq 2x250 Paired-end | 2x250 Paired-end | 4/16/2021 | 4/18/2021 | Sequencing | |||
50 | Mor_202 | MiSeq VDL | 2x150 Micro Run (4M Reads) | 4/16/2021 | Post Run QC | ||||
51 | MSOC_102 (MDL_126) | MiSeq Standard | 2x150 Nano Run (1M Reads) | 4/15/2021 | 4/16/2021 | Post Run QC | |||
52 | MSOC_102 (MDL_126) | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 4/16/2021 | 4/18/2021 | Sequencing | |||
53 | Nelson3_006_Run_5 | NextSeq Standard | 2x150 High (400M Reads) | 9/4/2020 | Delayed | ||||
54 | Novak_013 | Stowaway-Seq | 2x300 Paired-end | 3/26/2021 | 3/29/2021 | Post Run QC | |||
55 | Noyes_025 | MiSeq Standard | 2x300 Version 3 Chemistry (16-22M Reads) | 4/2/2021 | 4/8/2021 | Post Run QC | |||
56 | Noyes_027 | MiSeq Standard | 2x300 Version 3 Chemistry (16-22M Reads) | 4/2/2021 | 4/12/2021 | Post Run QC | |||
57 | Noyes_028 | Stowaway-Seq | 2x300 Paired-end | ||||||
58 | Noyes_029 | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 4/26/2021 | Library Prep | ||||
59 | Noyes_029_NanoQC | MiSeq Standard | 2x150 Nano Run (1M Reads) | 4/19/2021 | Library Prep | ||||
60 | Noyes_031 | MiSeq Expedited | 2x300 Version 3 Chemistry (16-22M Reads) | 4/2/2021 | 4/8/2021 | Post Run QC | |||
61 | Pecon-Slattery_002 | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 4/20/2021 | Library Prep | ||||
62 | PepsiCo_404 | Stowaway-Seq | 2x300 Paired-end | Library Prep | |||||
63 | Pietrasiak_001 | Stowaway-Seq | 2x300 Paired-end | ||||||
64 | Rivera-Mulia_006 | NextSeq Standard | 1x75 High (400M Reads) | 4/21/2021 | Library Prep | ||||
65 | Rutjens_Project_002 | NextSeq Standard | 1x150 Mid (130M Reads) | 4/16/2021 | Library Prep | ||||
66 | Sadowsky_198 | Stowaway-Seq | 2x300 Paired-end | 3/26/2021 | 3/29/2021 | Post Run QC | |||
67 | Sadowsky_199 | Stowaway-Seq | 2x300 Paired-end | 3/26/2021 | 3/29/2021 | Post Run QC | |||
68 | Seibold_004_Pool_1 | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 4/21/2021 | Library Prep | ||||
69 | Seibold_004_Pool_2 | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 4/21/2021 | Library Prep | ||||
70 | Seibold_004_Pool_3 | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 4/21/2021 | Library Prep | ||||
71 | Seibold_004_Pool_4 | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 4/21/2021 | Library Prep | ||||
72 | Seibold_004_Pool_5 | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 4/21/2021 | Library Prep | ||||
73 | Seibold_004_Pool_5 | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 4/27/2021 | Library Prep | ||||
74 | Singer_018 | MiSeq Standard | 2x300 Version 3 Chemistry (16-22M Reads) | 4/2/2021 | 4/11/2021 | Post Run QC | |||
75 | Singer_019 | MiSeq Standard | 2x300 Version 3 Chemistry (16-22M Reads) | 4/2/2021 | 4/16/2021 | Post Run QC | |||
76 | Singer_020_NanoQC_Pool_1 | MiSeq Standard | 2x150 Nano Run (1M Reads) | 4/19/2021 | Library Prep | ||||
77 | Singer_020_Pool_1 | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 4/26/2021 | Library Prep | ||||
78 | Staley_064 | Stowaway-Seq | 2x300 Paired-end | 3/26/2021 | 3/29/2021 | Post Run QC | |||
79 | Staley_065 | Stowaway-Seq | 2x300 Paired-end | ||||||
80 | Staley_066 | Stowaway-Seq | 2x300 Paired-end | ||||||
81 | Starr_NovaSeq_Superpool_130-136 | NovaSeq 2x150 Paired-end | 2x150 Paired-end | 4/8/2021 | In Seq Queue | ||||
82 | Trivedi_002 | Stowaway-Seq | 2x300 Paired-end | ||||||
83 | Wang12_002 | MiSeq Standard | 2x150 Nano Run (1M Reads) | 4/2/2021 | 4/11/2021 | Post Run QC | |||
84 | Weiblen_004 | Stowaway-Seq | 2x300 Paired-end | Library Prep | |||||
85 | Yacoub2_001_Run_1 | MiSeq Standard | 2x300 Version 3 Chemistry (16-22M Reads) | 4/2/2021 | 4/8/2021 | Post Run QC | |||
86 | Yacoub2_001_Run_2 | MiSeq Standard | 2x300 Version 3 Chemistry (16-22M Reads) | 4/2/2021 | 4/11/2021 | Post Run QC | |||
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1 | 3 | |||||||
|---|---|---|---|---|---|---|---|---|
2 | NovaSeq Run Calendar | Questions? E-mail: next-gen@umn.edu | ||||||
3 | ||||||||
4 | Flow cell position: A | Flow cell position: B | This is a web-published Google Sheet best viewed using Google Chrome or Apple Safari browsers. Firefox is not recommended. | |||||
5 | Running | Running | ||||||
6 | ||||||||
7 | Current Run | Current Run | Explainer: The tables on the left report on current and queued runs in the two flow cell positions (A and B) on the Illumina NovaSeq 6000 Sequencer. The sequencer can run two flow cells at a time. SP, S1 and S2 flow cells have 2 lanes, while S4 flow cells have 4. One lane generates between 375M and 2250M reads, depending on which flow cell is used (SP, S1, S2 or S4) resulting in the lowest-cost NGS data available. To view the queue of samples that are currently being prepared for sequencing on Nova, click on the NovaSeq Sample Queue tab above. | |||||
8 | Start | 4/16/2021 | Start | 4/16/2021 | ||||
9 | End | 4/18/2021 | End | 4/18/2021 | ||||
10 | Elapsed | Has been running for 2 days. | Elapsed | Has been running for 2 days. | ||||
11 | Run Type | S1 2x150-bp Paired-End DI | Run Type | SP 2x250-bp Paired-End | ||||
12 | Run ID | NovaSeq_Run_0531_04_16_21 | Run ID | NovaSeq_Run_0532_04_16_21 | ||||
13 | Lane 1 | MSOC_102 (MDL_126) | Lane 1 | MDH_Project_005 | ||||
14 | Lane 2 | CWGS_025 (MDL_126) | Lane 2 | MDH_Project_005 | ||||
15 | Lane 3 | NA | Lane 3 | NA | ||||
16 | Lane 4 | NA | Lane 4 | NA | ||||
17 | ||||||||
18 | Queued Run A1 | Queued Run B1 | Queued Run Notes: Note 1: For queued runs, the Est'd Start date will be entered once all lanes are filled, or at such time that we decide to sequence the flow cell despite the fact that it is only partially filled. Note 2: Clients may be able to accelerate the running of a partially-filled flow cell by requesting an expansion of their sequencing to fill the empty lanes. To discuss adding additional lanes to a queued flow cell, E-mail: next-gen@umn.edu. Note 3: Libraries shown in yellow are not yet on hand in the sequencer suite, but are expected imminently, and have therefore been mapped to a run. Note 4: Libraries shown in purple are CLIA libraries | |||||
19 | Est'd Start | 4/19/2021 | Est'd Start | |||||
20 | Est'd End | 4/21/2021 | Est'd End | |||||
21 | Run Type | S1 2x150-bp Paired-End DI | Run Type | |||||
22 | Lane 1 | Bold_002_003_TCR_NovaSeq_Pool | Lane 1 | |||||
23 | Lane 2 | Koob_016 | Lane 2 | |||||
24 | Lane 3 | NA | Lane 3 | |||||
25 | Lane 4 | NA | Lane 4 | |||||
26 | ||||||||
27 | Queued Run A2 | Queued Run B2 | ||||||
28 | Est'd Start | Est'd Start | ||||||
29 | Est'd End | Est'd End | ||||||
30 | Run Type | Run Type | ||||||
31 | Lane 1 | Lane 1 | ||||||
32 | Lane 2 | Lane 2 | ||||||
33 | Lane 3 | Lane 3 | ||||||
34 | Lane 4 | Lane 4 | ||||||
35 | ||||||||
36 | Queued Run A3 | Queued Run B3 | ||||||
37 | Est'd Start | Est'd Start | ||||||
38 | Est'd End | Est'd End | ||||||
39 | Run Type | Run Type | ||||||
40 | Lane 1 | Lane 1 | ||||||
41 | Lane 2 | Lane 2 | ||||||
42 | Lane 3 | Lane 3 | ||||||
43 | Lane 4 | Lane 4 | ||||||
44 | ||||||||
45 | Queued Run A4 | Queued Run B4 | ||||||
46 | Est'd Start | Est'd Start | ||||||
47 | Est'd End | Est'd End | ||||||
48 | Run Type | Run Type | ||||||
49 | Lane 1 | Lane 1 | ||||||
50 | Lane 2 | Lane 2 | ||||||
51 | Lane 3 | Lane 3 | ||||||
52 | Lane 4 | Lane 4 | ||||||
1 | ||||||||||||||||||||||||||
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2 | NovaSeq Sample Queue (Projects sequencing, or in queue for sequencing). | This is a web-published Google Sheet best viewed using Google Chrome or Apple Safari browsers. Firefox is not recommended. | ||||||||||||||||||||||||
3 | ||||||||||||||||||||||||||
4 | 2x150-bp Paired-end | 2x50-bp Paired-end | ||||||||||||||||||||||||
5 | Project | # of Lanes | Flow Cell Type | Loading Protocol | Est'd Lib Completion | Date Libraries R'cvd in CCRB | Project Status | Run Queue Position | # Lanes Filled | Est'd Run Date | Est'd Run Completion | Project | # of Lanes | Flow Cell Type | Loading Protocol | Est'd Lib Completion | Date Libraries R'cvd in CCRB | Project Status | Run Queue Position | # Lanes Filled | Est'd Run Date | Est'd Run Completion | Explainer: | |||
6 | MSOC_102 (MDL_126) | 1 | S1 | XP | 4/16/21 | 4/16/2021 | Sequencing | A Running | 2/2 | 4/16/2021 | 4/18/2021 | Cressler_002 | 1 | SP | XP | 3/29/2021 | 3/29/2021 | In Seq Queue | Unassigned | 1/2 | The tables on the left report currently sequencing -- and future -- NovaSeq sequencing libraries. We are currently only selling NovaSeq runs as single lanes or full flow cells. Fractional lanes are not allowed except for special UMGC internal service runs The availability of libraries determines the timing of queued NovaSeq runs, the planning of which is shown. The exact make-up of queued runs is liable to change depending on the timing of completion of libraries. PROJECT: the UMGC unique project ID, in format Investigator_### # OF LANES: the number of NovaSeq lanes requested EST'D LIB COMPLETION: the date when libraries are expected to complete library preparation and final QC. These include both UMGC-created and client-created libraries, and the estimated date may change due to a number of factors. DATE LIBRARIES R'CVD IN CCRB: the date on which the libraries were received in CCRB and made available for sequencing. Field turns yellow when date is 2 weeks past receipt and red when 3 weeks past receipt. If 3 weeks past and sequencing run has not launched, PI and Submitter will receive alternate options for sequencing via email. PROJECT STATUS: The current status of the libraries for the project. Status is described in detail on ILLUMINA NGS PROJECT HOME page. To view current sequencing run queue, see SEQUENCER RUNS tab for each platform at top of this page. # LANES FILLED: the number of lanes (out of 2 or 4 depending on flow cell type) that have been filled for queued runs. Green shading indicates a filled flow cell, whereas red shading indicates that there are too few libraries accumulated to permit the run to proceed. ESTIMATED RUN DATE: the date on which queued runs are estimated to be launched. ESTIMATED RUN COMPLETION: the date on which queued runs are estimated to complete. Data delivery is generally within 1-4 business days after completion. | |||||
7 | CWGS_025 (MDL_126) | 1 | S1 | XP | 4/16/2021 | 4/16/2021 | Sequencing | A Running | 2/2 | 4/16/2021 | 4/18/2021 | |||||||||||||||
8 | Bold_002_003_TCR_NovaSeq_Pool | 1 | S1 | XP | 3/29/2021 | 4/2/2021 | In Seq Queue | A1 | 2/2 | 4/19/2021 | 4/21/2021 | |||||||||||||||
9 | Koob_016 | 1 | S1 | XP | 4/26/2021 | 4/15/2021 | In Seq Queue | A1 | 2/2 | 4/19/2021 | 4/21/2021 | |||||||||||||||
10 | Starr_NovaSeq_Superpool_130-136 | 1 | S4 | XP | 4/8/2021 | 4/13/2021 | In Seq Queue | Unassigned | 2/4 | |||||||||||||||||
11 | Jameson_029_Novaseq_Pool | 1 | S4 | XP | 4/8/2021 | 4/9/2021 | In Seq Queue | Unassigned | 2/4 | |||||||||||||||||
12 | Farrar_038_CU_Reseq_Pool | 1 | S1 | XP | 3/24/2021 | Library Prep | Unassigned | |||||||||||||||||||
13 | Langlois_044 | 1 | S1 | XP | 4/21/2021 | Library Prep | Unassigned | |||||||||||||||||||
14 | Seibold_004_Pool_1 | 1 | S4 | XP | 4/21/2021 | Library Prep | Unassigned | |||||||||||||||||||
15 | Seibold_004_Pool_2 | 1 | S4 | XP | 4/21/2021 | Library Prep | Unassigned | |||||||||||||||||||
16 | Seibold_004_Pool_3 | 1 | S4 | XP | 4/21/2021 | Library Prep | Unassigned | |||||||||||||||||||
17 | Seibold_004_Pool_4 | 1 | S4 | XP | 4/21/2021 | Library Prep | Unassigned | |||||||||||||||||||
18 | Seibold_004_Pool_5 | 1 | S4 | XP | 4/21/2021 | Library Prep | Unassigned | |||||||||||||||||||
19 | Singer_020_Pool_1 | 4 | S4 | Standard | 4/26/2021 | Library Prep | Unassigned | 4/4 | ||||||||||||||||||
20 | Singer_020_Pool_2 | 1 | S4 | XP | 4/26/2021 | Library Prep | Unassigned | |||||||||||||||||||
21 | Noyes_029 | 2 | S4 | XP | 4/26/2021 | Library Prep | Unassigned | |||||||||||||||||||
22 | Kashyap_017_Pool_1 | 1 | S4 | XP | 4/27/2021 | Library Prep | Unassigned | |||||||||||||||||||
23 | Kashyap_017_Pool_2 | 1 | S4 | XP | 4/27/2021 | Library Prep | Unassigned | |||||||||||||||||||
24 | Largaespada_136 | 1 | S4 | XP | 4/28/2021 | Library Prep | Unassigned | |||||||||||||||||||
25 | Dehm_071 | 1 | S4 | XP | 5/10/2021 | Library Prep | Unassigned | |||||||||||||||||||
26 | Hare_Project_003 | 1 | SP | XP | 4/10/2021 | Library Prep | Unassigned | |||||||||||||||||||
27 | Pecon-Slattery_002 | 1 | SP | XP | 4/20/2021 | Library Prep | Unassigned | |||||||||||||||||||
28 | Endelman_015 | 1 | SP | XP | 4/21/2021 | Library Prep | Unassigned | |||||||||||||||||||
29 | Dehm_070 | 1 | SP | XP | 4/28/2021 | Library Prep | Unassigned | |||||||||||||||||||
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39 | 2x100-bp Paired-end | 1x100-bp Single Read | ||||||||||||||||||||||||
40 | Project | # of Lanes | Flow Cell Type | Loading Protocol | Est'd Lib Completion | Date Libraries R'cvd in CCRB | Project Status | Run Queue Position | # Lanes Filled | Est'd Run Date | Est'd Run Completion | Project | # of Lanes | Flow Cell Type | Loading Protocol | Est'd Lib Completion | Date Libraries R'cvd in CCRB | Project Status | Run Queue Position | # Lanes Filled | Est'd Run Date | Est'd Run Completion | ||||
41 | GBS_Group_D | 2 | S1 | 4/16/2021 | Library Prep | Unassigned | 2/2 | |||||||||||||||||||
42 | Ciappesoni_001 | 2 | S1 | 4/21/2021 | Library Prep | Unassigned | 2/2 | |||||||||||||||||||
43 | GBS_Group_G | 2 | S1 | 4/16/2021 | Library Prep | Unassigned | 2/2 | |||||||||||||||||||
44 | Coyne_003 | 1 | SP | 4/23/2021 | Library Prep | Unassigned | 1/2 | |||||||||||||||||||
45 | Lozada_005 | 2 | S1 | 4/23/2021 | Library Prep | Unassigned | ||||||||||||||||||||
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63 | 2x250-bp Paired-end | Reserved For Future Run Configuration | ||||||||||||||||||||||||
64 | Project | # of Lanes | Flow Cell Type | Loading Protocol | Est'd Lib Completion | Date Libraries R'cvd in CCRB | Project Status | Run Queue Position | # Lanes Filled | Est'd Run Date | Est'd Run Completion | Project | # of Lanes | Flow Cell Type | Loading Protocol | Est'd Lib Completion | Date Libraries R'cvd in CCRB | Project Status | Run Queue Position | # Lanes Filled | Est'd Run Date | Est'd Run Completion | ||||
65 | MDH_Project_005 | 1 | SP | XP | 4/16/2021 | 4/16/2021 | Sequencing | B Running | 2/2 | 4/16/2021 | 4/18/2021 | |||||||||||||||
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|---|---|---|---|---|---|---|---|---|---|---|---|---|
2 | NextSeq #1 | NextSeq #2 | Questions? E-mail: next-gen@umn.edu | |||||||||
3 | Idle | Idle | This is a web-published Google Sheet best viewed using Google Chrome or Apple Safari browsers. Firefox is not recommended. | |||||||||
4 | ||||||||||||
5 | Current Run | Start | Current Run | Start | ||||||||
6 | End | End | ||||||||||
7 | Read Length | Read Length | Explainer: The table on the left reports current and queued runs on the NextSeq. The NextSeq can run one flow cell at a time in various flexible length configurations and outputs (High-output, Mid-output, paired-end and single read). Each flow cell will be assigned a single client project except in the case of GBS pilot runs. These runs are assigned as shared runs by UMGC staff. NextSeq runs have a duration of 1 to 2 days and are ideal for small to mid-output NGS projects. Expedited runs are available on the platform for an expedited fee. To view the queue of samples that are currently being prepared for sequencing, click on the NextSeq Sample Queue tab above. | |||||||||
8 | Queue Type | Queue Type | ||||||||||
9 | Projects | Projects | ||||||||||
10 | ||||||||||||
11 | Queued Run #1 | Start | Queued Run #1 | Start | 4/19/2021 | |||||||
12 | End | End | 4/21/2021 | |||||||||
13 | Read Length | Read Length | 2x75 Mid (130M Reads) | |||||||||
14 | Queue Type | Queue Type | Standard Sample Queue | |||||||||
15 | Projects | Projects | Ji_009 (ReSeq) | |||||||||
16 | ||||||||||||
17 | Queued Run #2 | Start | Queued Run #2 | Start | ||||||||
18 | End | End | ||||||||||
19 | Read Length | Read Length | ||||||||||
20 | Queue Type | Queue Type | ||||||||||
21 | Projects | Projects | ||||||||||
22 | ||||||||||||
23 | Queued Run #3 | Start | Queued Run #3 | Start | ||||||||
24 | End | End | ||||||||||
25 | Read Length | Read Length | ||||||||||
26 | Queue Type | Queue Type | ||||||||||
27 | Projects | Projects | ||||||||||
1 | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2 | NextSeq Standard Sample Queue | NextSeq Expedited Sample Queue For clients who need more rapid turnaround, this queue can be accessed for an additional fee. | This is a web-published Google Sheet best viewed using Google Chrome or Apple Safari browsers. Firefox is not recommended. | |||||||||||||||||||||
3 | ||||||||||||||||||||||||
4 | Project | Run Type | # of Lanes | Est'd Lib Completion | Date Libraries R'cvd in CCRB | Project Status | Queue Position | Est'd Run Date | Est'd Run Completion | NextSeq # | Project | Run Type | # of Lanes | Est'd Lib Completion | Date Libraries R'cvd in CCRB | Project Status | Queue Position | Est'd Run Date | Est'd Run Completion | NextSeq # | Explainer: | |||
5 | Ji_009 | 2x75 Mid (130M Reads) | 1 | 4/13/2021 | 4/9/2021 | Post Run QC | History | 4/15/2021 | 4/16/2021 | NextSeq #2 | The tables on the left report currently sequencing -- and future -- NextSeq sequencing libraries. We are currently only selling NextSeq runs as full flow cells (i.e. no shared runs or fractional runs). The availability of libraries determines the timing of queued NextSeq runs, the planning of which is shown. PROJECT: the UMGC unique project ID, in format Investigator_### # OF LANES: currently always 1. EST'D LIB COMPLETION: the date when libraries are expected to complete library preparation and final QC. These include both UMGC-created and client-created libraries, and the estimated date may change due to a number of factors. DATE LIBRARIES R'CVD IN CCRB: the date on which the libraries were received in CCRB and made available for sequencing. Field turns yellow when date is 2 weeks past receipt and red when 3 weeks past receipt. If 3 weeks past and sequencing run has not launched, PI and Submitter will receive alternate options for sequencing via email. PROJECT STATUS: The current status of the libraries for the project. Status is described in detail on ILLUMINA NGS PROJECT HOME page. To view current sequencing run queue, see SEQUENCER RUNS tab for each platform at top of this page. ESTIMATED RUN DATE: the date on which queued runs are estimated to be launched. ESTIMATED RUN COMPLETION: the date on which queued runs are estimated to complete. Data delivery is generally within 2-4 business days after completion. | |||||||||||||
6 | Nelson3_006_Run_5 | 2x150 High (400M Reads) | 1 | 9/4/2020 | 9/4/2020 | Delayed | Unassigned | |||||||||||||||||
7 | GBS_Group_H | 1x150 High (400M Reads) | 1 | 4/16/2021 | Library Prep | Unassigned | ||||||||||||||||||
8 | Rutjens_Project_002 | 1x150 Mid (130M Reads) | 1 | 4/16/2021 | Library Prep | Unassigned | ||||||||||||||||||
9 | GBS_Group_K | 1x150 Mid (130M Reads) | 1 | 4/16/2021 | Library Prep | Unassigned | ||||||||||||||||||
10 | Rivera-Mulia_006 | 1x75 High (400M Reads) | 1 | 4/21/2021 | Library Prep | Unassigned | ||||||||||||||||||
11 | Gradilone_009 | 2x75 High (400M Reads) | 1 | 4/16/2021 | Library Prep | Unassigned | ||||||||||||||||||
12 | Lund_007 | 2x75 Mid (130M Reads) | 1 | 4/16/2021 | Library Prep | Unassigned | ||||||||||||||||||
13 | Ji_009 (ReSeq) | 2x75 Mid (130M Reads) | 1 | 4/16/2021 | 4/16/2021 | In Seq Queue | 2. Queued Run #1 | 4/19/2021 | 4/20/2021 | NextSeq #2 | ||||||||||||||
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31 | # Future Lanes | 9 | # Future Lanes | 0 | ||||||||||||||||||||
1 | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2 | MiSeq #1 (Standard Sample Queue) | MiSeq #2 (Standard Sample Queue) | MiSeq #3 (VDL MiSeq) (Priority: VDL) | MiSeq #4 (Priority: Expedited Runs) | MiSeq #5 (Harris Lab MiSeq) (Priority: Harris Lab) | MiSeq #6 (Standard Sample Queue) | ||||||||||||||
3 | Idle | Idle | Running | Idle | Idle | Idle | ||||||||||||||
4 | ||||||||||||||||||||
5 | Current Run | Start | Start | Start | 4/16/2021 | Start | Start | Start | ||||||||||||
6 | End | End | End | 4/17/21 | End | End | End | |||||||||||||
7 | Read Length | Read Length | Read Length | 2x150 Nano Run (1M Reads) | Read Length | Read Length | Read Length | |||||||||||||
8 | Queue Type | Queue Type | Queue Type | Standard Sample Queue | Queue Type | Queue Type | Queue Type | |||||||||||||
9 | Projects | Projects | Projects | Largaespada_136 | Projects | Projects | Projects | |||||||||||||
10 | ||||||||||||||||||||
11 | Queued Run #1 | Start | Start | Start | Start | 4/19/2021 | Start | Start | ||||||||||||
12 | End | End | End | End | 4/20/21 | End | End | |||||||||||||
13 | Read Length | Read Length | Read Length | Read Length | 2x150 Nano Run (1M Reads) | Read Length | Read Length | |||||||||||||
14 | Queue Type | Queue Type | Queue Type | Queue Type | Standard Sample Queue | Queue Type | Queue Type | |||||||||||||
15 | Projects | Projects | Projects | Projects | 10X_Nano_Pool_070_040921 | Projects | Projects | |||||||||||||
16 | ||||||||||||||||||||
17 | Queued Run #2 | Start | Start | Start | Start | Start | Start | |||||||||||||
18 | End | End | End | End | End | End | ||||||||||||||
19 | Read Length | Read Length | Read Length | Read Length | Read Length | Read Length | ||||||||||||||
20 | Queue Type | Queue Type | Queue Type | Queue Type | Queue Type | Queue Type | ||||||||||||||
21 | Projects | Projects | Projects | Projects | Projects | Projects | ||||||||||||||
22 | ||||||||||||||||||||
23 | Queued Run #3 | Start | Start | Start | Start | Start | Start | |||||||||||||
24 | End | End | End | End | End | End | ||||||||||||||
25 | Read Length | Read Length | Read Length | Read Length | Read Length | Read Length | ||||||||||||||
26 | Queue Type | Queue Type | Queue Type | Queue Type | Queue Type | Queue Type | ||||||||||||||
27 | Projects | Projects | Projects | Projects | Projects | Projects | ||||||||||||||
28 | ||||||||||||||||||||
29 | Queued Run #4 | Start | Start | Start | Start | Start | Start | |||||||||||||
30 | End | End | End | End | End | End | ||||||||||||||
31 | Read Length | Read Length | Read Length | Read Length | Read Length | Read Length | ||||||||||||||
32 | Queue Type | Queue Type | Queue Type | Queue Type | Queue Type | Queue Type | ||||||||||||||
33 | Projects | Projects | Projects | Projects | Projects | Projects | ||||||||||||||
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | Standard Libraries (First-come, First-served, MiSeqs #1-#2, #6) Standard runs are ordinarily scheduled on MiSeq #1 or #2, but may be run on MiSeqs #3-#6 if those instruments are open. | Veterinary Diagnostic Lab (VDL) Libraries (MiSeq #3) VDL samples receive priority on MiSeq #3, which is owned by the VDL and operated by the UMGC. MiSeq #3 is used for "Standard" runs only when the VDL does not have libraries ready for sequencing. | Expedited Libraries (MiSeq #4) For clients who need more rapid turnaround, MiSeq #4 -- un unsubsidized instrument -- is reserved for their use. Although runs on MiSeq #4 are about 50% more expensive than on MiSeq #1 or #2, there is typically no queue to get on the instrument. MiSeq #4 is used for "Standard" runs only when there are no expedited libraries ready for sequencing. | Harris Lab Libraries (MiSeq #5) Harris Lab samples receive priority on MiSeq #5, which is owned by Dr. Harris and operated by the UMGC. MiSeq #5 is used for "Standard" runs only when the Harris lab does not have libraries ready for sequencing. | |||||||||||||||||||||||||||||||||||||||||
4 | |||||||||||||||||||||||||||||||||||||||||||||
5 | Project | Run Type | # of Lanes | Est'd Lib Completion | Date Libraries R'cvd in CCRB | Project Status | Queue Position | Est'd Run Date | Est'd Run Completion | MiSeq # | Project | Run Type | # of Lanes | Est'd Lib Completion | Date Libraries R'cvd | VDL Priority | Project Status | Queue Position | Est'd Run Date | Est'd Run Completion | MiSeq # | Project | Run Type | # of Lanes | Est'd Lib Completion | Date Libraries R'cvd in CCRB | Project Status | Queue Position | Est'd Run Date | Est'd Run Completion | MiSeq # | Project | Run Type | # of Lanes | Est'd Lib Completion | Date Libraries R'cvd in CCRB | Project Status | Queue Position | Est'd Run Date | Est'd Run Completion | MiSeq # | ||||
6 | Hussey_002 | 2x250 Version 2 Chemistry (8-12M Reads) | 1 | 4/2/2021 | 4/2/2021 | Post Run QC | History | 4/13/2021 | 4/15/2021 | MiSeq #4 | Mor_202 | 2x150 Micro Run (4M Reads) | 1 | 4/15/2021 | Priority 1 | Post Run QC | History | 4/15/2021 | 4/16/2021 | MiSeq #3 | Noyes_031 | 2x300 Version 3 Chemistry (16-22M Reads) | 1 | 4/2/2021 | 4/2/2021 | Post Run QC | History | 4/5/2021 | 4/8/2021 | MiSeq #6 | |||||||||||||||
7 | Singer_019 | 2x300 Version 3 Chemistry (16-22M Reads) | 1 | 4/2/2021 | 4/2/2021 | Post Run QC | History | 4/13/2021 | 4/16/2021 | MiSeq #5 | Largaespada_136_Nano_QC | 2x150 Nano Run (1M Reads) | 1 | 4/23/2021 | Sequencing | 1. Running | 4/16/2021 | 4/17/2021 | MiSeq #3 | ||||||||||||||||||||||||||
8 | Gomez_019 | 2x300 Version 3 Chemistry (16-22M Reads) | 1 | 4/2/2021 | 4/2/2021 | Post Run QC | History | 4/13/2021 | 4/16/2021 | MiSeq #6 | |||||||||||||||||||||||||||||||||||
9 | MSOC_102 (MDL_126) | 2x150 Nano Run (1M Reads) | 1 | 4/15/2021 | 4/15/2021 | Post Run QC | History | 4/15/2021 | 4/16/2021 | MiSeq #1 | |||||||||||||||||||||||||||||||||||
10 | CWGS_025 (MDL_126) | 2x150 Nano Run (1M Reads) | 1 | 4/15/2021 | 4/15/2021 | Post Run QC | History | 4/15/2021 | 4/16/2021 | MiSeq #2 | |||||||||||||||||||||||||||||||||||
11 | Bindels_010 | 2x300 Version 3 Chemistry (16-22M Reads) | 1 | 4/2/2021 | 4/2/2021 | Post Run QC | History | 4/9/2021 | 4/12/2021 | MiSeq #1 | |||||||||||||||||||||||||||||||||||
12 | Noyes_027 | 2x300 Version 3 Chemistry (16-22M Reads) | 1 | 4/2/2021 | 4/2/2021 | Post Run QC | History | 4/9/2021 | 4/12/2021 | MiSeq #2 | |||||||||||||||||||||||||||||||||||
13 | Noyes_025 | 2x300 Version 3 Chemistry (16-22M Reads) | 1 | 4/2/2021 | 4/2/2021 | Post Run QC | History | 4/5/2021 | 4/8/2021 | MiSeq #2 | |||||||||||||||||||||||||||||||||||
14 | Yacoub2_001_Run_2 | 2x300 Version 3 Chemistry (16-22M Reads) | 1 | 4/2/2021 | 4/2/2021 | Post Run QC | History | 4/8/2021 | 4/11/2021 | MiSeq #4 | |||||||||||||||||||||||||||||||||||
15 | Yacoub2_001_Run_1 | 2x300 Version 3 Chemistry (16-22M Reads) | 1 | 4/2/2021 | 4/2/2021 | Post Run QC | History | 4/5/2021 | 4/8/2021 | MiSeq #4 | |||||||||||||||||||||||||||||||||||
16 | Singer_018 | 2x300 Version 3 Chemistry (16-22M Reads) | 1 | 4/2/2021 | 4/2/2021 | Post Run QC | History | 4/8/2021 | 4/11/2021 | MiSeq #5 | |||||||||||||||||||||||||||||||||||
17 | Falcao-Salles_008 | 2x300 Version 3 Chemistry (16-22M Reads) | 1 | 4/2/2021 | 4/2/2021 | Post Run QC | History | 4/5/2021 | 4/8/2021 | MiSeq #5 | |||||||||||||||||||||||||||||||||||
18 | Wang12_002 | 2x300 Version 3 Chemistry (16-22M Reads) | 1 | 4/2/2021 | 4/2/2021 | Post Run QC | History | 4/8/2021 | 4/11/2021 | MiSeq #6 | |||||||||||||||||||||||||||||||||||
19 | 10X_Nano_Pool_070_040921 | 2x150 Nano Run (1M Reads) | 1 | 4/9/2021 | 4/9/2021 | In Seq Queue | 2. Queued Run #1 | 4/19/2021 | 4/20/2021 | MiSeq #4 | |||||||||||||||||||||||||||||||||||
20 | Lozada_005 | 2x150 Nano Run (1M Reads) | 1 | 4/13/2021 | Library Prep | Unassigned | |||||||||||||||||||||||||||||||||||||||
21 | Ciappesonni_001 | 2x150 Nano Run (1M Reads) | 1 | 4/14/2021 | Library Prep | Unassigned | |||||||||||||||||||||||||||||||||||||||
22 | Singer_020_NanoQC_Pool_1 | 2x150 Nano Run (1M Reads) | 1 | 4/19/2021 | Library Prep | Unassigned | |||||||||||||||||||||||||||||||||||||||
23 | Singer_020_NanoQC_Pool_2 | 2x150 Nano Run (1M Reads) | 1 | 4/19/2021 | Library Prep | Unassigned | |||||||||||||||||||||||||||||||||||||||
24 | Noyes_029_NanoQC | 2x150 Nano Run (1M Reads) | 1 | 4/19/2021 | Library Prep | Unassigned | |||||||||||||||||||||||||||||||||||||||
25 | Bell2_003 | 2x150 Nano Run (1M Reads) | 1 | 4/21/2021 | Library Prep | Unassigned | |||||||||||||||||||||||||||||||||||||||
26 | Coyne_004 | 2x150 Nano Run (1M Reads) | 1 | 4/21/2021 | Library Prep | Unassigned | |||||||||||||||||||||||||||||||||||||||
27 | Kennedy_022 | 2x250 Version 2 Chemistry (8-12M Reads) | 1 | 4/30/2021 | Library Prep | Unassigned | |||||||||||||||||||||||||||||||||||||||
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1 | |||||||
|---|---|---|---|---|---|---|---|
2 | iSeq #1 (Standard Sample Queue) | Questions? E-mail: next-gen@umn.edu | |||||
3 | Idle | This is a web-published Google Sheet best viewed using Google Chrome or Apple Safari browsers. Firefox is not recommended. | |||||
4 | |||||||
5 | Current Run | Start | |||||
6 | End | ||||||
7 | Read Length | Explainer: The table on the left reports current and queued runs on the iSeq. The iSeq can run one flow cell at a time in a single 2x151-bp configuration. A 2x250-bp kit is expected to be available soon. iSeq runs have a duration of approximately 20 hours and are ideal for amplicon sequencing, targeted NGS applications and other low output NGS projects. Expedited runs are available on the platform for an expedited fee. To view the queue of samples that are currently being prepared for sequencing, click on the iSeq Sample Queue tab above. The iSeq is also our Do-It-Yourself Genomics instrument. If you would like to make and sequence your own libraries for convenience and faster turnaround, please see details on our DIY page (http://genomics.umn.edu/diy_iseq.php). | |||||
8 | Queue Type | ||||||
9 | Projects | ||||||
10 | |||||||
11 | Queued Run #1 | Start | |||||
12 | End | ||||||
13 | Read Length | ||||||
14 | Queue Type | ||||||
15 | Projects | ||||||
16 | |||||||
17 | Queued Run #2 | Start | |||||
18 | End | ||||||
19 | Read Length | ||||||
20 | Queue Type | ||||||
21 | Projects | ||||||
22 | |||||||
23 | Queued Run #3 | Start | |||||
24 | End | ||||||
25 | Read Length | ||||||
26 | Queue Type | ||||||
27 | Projects | ||||||
1 | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2 | iSeq Standard Libraries | iSeq Expedited Libraries For clients who need more rapid turnaround, this queue can be accessed for an additional fee. | This is a web-published Google Sheet best viewed using Google Chrome or Apple Safari browsers. Firefox is not recommended. | |||||||||||||||||||
3 | ||||||||||||||||||||||
4 | Project | Run Type | # of Lanes | Est'd Lib Completion | Date Libraries R'cvd in CCRB | Project Status | Queue Position | Est'd Run Date | Est'd Run Completion | Explainer: | ||||||||||||
5 | The tables on the left report currently sequencing -- and future -- iSeq sequencing libraries. We are currently only selling NextSeq runs as full flow cells (i.e. no shared runs or fractional runs). The availability of libraries determines the timing of queued iSeq runs, the planning of which is shown. PROJECT: the UMGC unique project ID, in format Investigator_### # OF LANES: currently always 1. EST'D LIB COMPLETION: the date when libraries are expected to complete library preparation and final QC. These include both UMGC-created and client-created libraries, and the estimated date may change due to a number of factors. DATE LIBRARIES R'CVD IN CCRB: the date on which the libraries were received in CCRB and made available for sequencing. Field turns yellow when date is 2 weeks past receipt and red when 3 weeks past receipt. If 3 weeks past and sequencing run has not launched, PI and Submitter will receive alternate options for sequencing via email. PROJECT STATUS: The current status of the libraries for the project. Status is described in detail on ILLUMINA NGS PROJECT HOME page. To view current sequencing run queue, see SEQUENCER RUNS tab for each platform at top of this page. ESTIMATED RUN DATE: the date on which queued runs are estimated to be launched. ESTIMATED RUN COMPLETION: the date on which queued runs are estimated to complete. Data delivery is generally within 1-3 business days after completion. | |||||||||||||||||||||
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26 | # Future Lanes | 0 | # Future Lanes | 0 | ||||||||||||||||||
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2 | Stowaway-Seq Run Calendar. | ||||||||||||||
3 | Stowaway-Seq (2x300 PE MiSeq Runs) Stowaway-Seq is a service designed to provide shallow (≤ 2M reads), low-cost ($322.14) sequencing for small-scale pilot experiments. We achieve this by a) pooling projects from many different users, b) managing the addition of indexing barcodes to ensure that pooled libraries are compatible, and c) running all projects using a read length (2x300-bp PE) that encompasses any desired sequencing flavor. Please read FAQs below for more information, contact Corbin Dirkx (micbiom@umn.edu, 16S samples or amplicons) or Aaron Becker (next-gen@umn.edu, other library types). | ||||||||||||||
4 | |||||||||||||||
5 | Run Date and Status | Submission Cutoff Dates For Client-made Libraries | Submission Cutoff Dates For Amplicons or 16S Samples (Important: See FAQ #1!) | Run Details | |||||||||||
6 | Scheduled Run Date | Days Until Run | Status | Cutoff Date | Days Remaining Until Cutoff Date | Cutoff Date | Days Remaining Until Cutoff Date | Project | Project Status | # of 1/8th Lanes Requested | Est'd Lib Completion | Date Libraries received in CCRB | Est'd Run Completion | MiSeq # | |
7 | Friday, 03-26-21 | Will launch in -23 days. | Completed | Friday, 03-12-21 | Cutoff date is past. This Stowaway-Seq run is closed. | Friday, 02-26-21 | Cutoff date is past. This Stowaway-Seq run is closed for amplicon/16S sample submission. | Novak_013 | Post Run QC | 1 | 3/26/2021 | 3/26/2021 | 3/29/2021 | MiSeq #4 | |
8 | Sadowsky_198 | Post Run QC | 3 | 3/26/2021 | 3/26/2021 | 3/29/2021 | |||||||||
9 | Sadowsky_199 | Post Run QC | 2 | 3/26/2021 | 3/26/2021 | 3/29/2021 | |||||||||
10 | Hamilton2_024 | Post Run QC | 1 | 3/26/2021 | 3/26/2021 | 3/29/2021 | |||||||||
11 | |||||||||||||||
12 | Ezzat_003 | Post Run QC | 1 | 3/11/2021 | 3/11/2021 | 3/29/2021 | |||||||||
13 | Ebner2_002 | Post Run QC | 1 | 3/25/2021 | 3/25/2021 | 3/29/2021 | |||||||||
14 | |||||||||||||||
15 | Friday, 04-16-21 | Will launch in -2 days. | Completed | Friday, 04-02-21 | Cutoff date is past. This Stowaway-Seq run is closed. | Monday, 03-22-21 | Cutoff date is past. This Stowaway-Seq run is closed for amplicon/16S sample submission. | Hamilton2_025 | Post Run QC | 1 | 3/26/2021 | 3/26/2021 | 3/29/2021 | MiSeq #5 | |
16 | Lillo_002/Gollamudi_002/Goemann_002 | Post Run QC | 1 | 3/26/2021 | 3/26/2021 | 3/29/2021 | |||||||||
17 | Staley_064 | Post Run QC | 2 | 3/26/2021 | 3/26/2021 | 3/29/2021 | |||||||||
18 | Kang2_002 | Post Run QC | 1 | 3/26/2021 | 3/26/2021 | 3/29/2021 | |||||||||
19 | LeBrasseur_002 | Post Run QC | 3 | 3/26/2021 | 3/26/2021 | 3/29/2021 | |||||||||
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21 | |||||||||||||||
22 | |||||||||||||||
23 | Friday, 05-07-21 | Will launch in 19 days. | Next Up | Friday, 04-23-21 | You have 5 days remaining to submit client-made libraries. | Friday, 04-09-21 | Cutoff date is past. This Stowaway-Seq run is closed for amplicon/16S sample submission. | Weiblen_004 | Library Prep | 1 | |||||
24 | Staley_065 | 1 | |||||||||||||
25 | Staley_066 | 1 | |||||||||||||
26 | Trivedi_002 | 2 | |||||||||||||
27 | Gomez2_001_ReSeq | 3 | |||||||||||||
28 | Kennedy_021 | Library Prep | 1 | ||||||||||||
29 | PepsiCo_404 | Library Prep | 1 | ||||||||||||
30 | |||||||||||||||
31 | Friday, 05-28-21 | Will launch in 40 days. | Friday, 05-14-21 | You have 26 days remaining to submit client-made libraries. | Friday, 04-30-21 | You have 12 days remaining to submit amplicons or 16S samples. | Fok_002 / Klatt_026 | 1 | |||||||
32 | Gutknecht_001 | 1 | |||||||||||||
33 | Noyes_028 | 1 | |||||||||||||
34 | Pietrasiak_001 | 3 | |||||||||||||
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39 | Friday, 06-18-21 | Will launch in 61 days. | Friday, 06-04-21 | You have 47 days remaining to submit client-made libraries. | Friday, 05-21-21 | You have 33 days remaining to submit amplicons or 16S samples. | |||||||||
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47 | |||||||||||||||
48 | FAQ: | ||||||||||||||
49 | 1) How much space can I request? | ||||||||||||||
50 | You may request increments of 1/8th of a MiSeq Lane to a maximum of 4 "lanes", if space allows. UMGC staff reserves the right to limit lane requests to a single "lane" per run, per user when high request volumes occur. If a large number of submissions are received, we will create multiple stowaway runs for a given submission period. | ||||||||||||||
51 | |||||||||||||||
52 | 2) What are the charges? | ||||||||||||||
53 | UMGC will charge users in increments of 1/8th of a lane ($322.14 per 1/8 th of a lane) requested. | ||||||||||||||
54 | |||||||||||||||
55 | 3) What samples are acceptable? | ||||||||||||||
56 | Libraries that have been indexed and pooled will be accepted two weeks before the Stowaway-Seq run date. We may accept samples for library creation for Stowaway service (e.g., amplicons or 16S samples), but ONLY when prior approval has been obtained, with enough time for the library creation to occur. | ||||||||||||||
57 | |||||||||||||||
58 | 4) Do you perform QC on libraries? | ||||||||||||||
59 | Yes. We perform Kapa QC on samples to ensure functional library. | ||||||||||||||
60 | |||||||||||||||
61 | 5) What is the deadline for submission? | ||||||||||||||
62 | For client-made libraries, the cut-off for submission is at least 14 days prior to the scheduled run. For amplicons and 16S samples, the cut-off for submission is at least 28 days prior to the scheduled run. | ||||||||||||||
63 | |||||||||||||||
64 | 6) Can I request Expedited Service for a Stowaway run? | ||||||||||||||
65 | No. The purpose of Stowaway-Seq is not speed, but low cost. The runs are scheduled in advance and guaranteed to run on the scheduled date, in order to provide a reliable, low-cost option for all. | ||||||||||||||
66 | |||||||||||||||
67 | 7) How do I request this service? | ||||||||||||||
68 | Please refer to this Google Doc to see the availibility of the next run. | ||||||||||||||
69 | |||||||||||||||
70 | 8) How can I know what barcodes to use for my samples – so that they do not overlap with another researcher’s barcodes? | ||||||||||||||
71 | Please email next-gen@umn.edu with your intended barcodes. We will check it against others currently in the run and notify you. | ||||||||||||||
72 | |||||||||||||||
73 | 9) What if I miss the deadline for submission? | ||||||||||||||
74 | UMGC will try to accommodate your request on the next scheduled run provided there is no barcode conflict. | ||||||||||||||
75 | |||||||||||||||
76 | 10) This is great, but I can't seem to get on a Stowaway-Seq run because they fill up too fast, and my submission type is of low priority according to your policies!!! | ||||||||||||||
77 | We have the ability to increase the frequency of Stowaway-Seq runs, and will do so if we find that demand justifies it. | ||||||||||||||
78 | |||||||||||||||
79 | 11) I still have questions. Who can I contact? | ||||||||||||||
80 | Please contact the Aaron Becker (Illumina Sequencing Services Manager) at becke044@umn.edu for questions regarding client-made library submission, or Corbin Dirkx (High-throughput Sequencing Services Manager) at micbiom@umn.edu for questions regarding amplicon or 16S sample submission. | ||||||||||||||
1 | |||||||||||||
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2 | Charter Service RNA-Seq Calendar | ||||||||||||
3 | Charter Service RNA-Seq (2x150 PE NovaSeq Runs) Charter Service is the UMN Genomics Center's new RNA-Seq service at $179/sample (UMN rate, library prep + sequencing) that provides a monthly shared NovaSeq run that departs on the 1st business day of the month with data arriving the 1st business day of the following month. Carry-on luggage is restricted to 20 million reads/sample on a 150 PE run, but additional space can be purchased in 20-million-read increments at $100/sample. More details at http://genomics.umn.edu/ngs-library-rna.php | ||||||||||||
4 | |||||||||||||
5 | Departure Date and Status | Cutoff Dates For Seat Reservation | Flight Arrival (Data Delivery) | Seating Chart and Flight Details | |||||||||
6 | Scheduled Flight Date | Days Until Flight | Status | Cutoff Date | Days Remaining Until Cutoff Date | Arrival Date | Days Remaining Until Flight Arrival | Project | Project Status | # Of Seats Assigned (8 samples/seat) | Passengers Due In Terminal | Est'd Passenger Delivery (Data Release) | |
7 | Monday, 02-01-21 | Will depart in -76 days. | Arrived | Monday, 01-18-21 | Cutoff date is past. This Charter-Seq flight is closed. | Wednesday, 03-03-21 | Flight arrives in -46 days. | Chan2_002 | Departed | 2 | 3/3/21 | 3/5/2021 | |
8 | Bierle_013 | Departed | 5 | 3/3/21 | 3/5/2021 | ||||||||
9 | Beckman4_001 | Departed | 2 | 3/3/21 | 3/5/2021 | ||||||||
10 | Hunter_035 | Departed | 3 | 3/3/21 | 3/5/2021 | ||||||||
11 | Garry_083 | Departed | 3 | 3/3/21 | 3/5/2021 | ||||||||
12 | Osorio_009 | Departed | 2 | 3/3/21 | 3/5/2021 | ||||||||
13 | Perlingeiro_062 | Departed | 4 | 3/3/21 | 3/5/2021 | ||||||||
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17 | Monday, 03-01-21 | Will depart in -48 days. | Arrived | Monday, 02-15-21 | Cutoff date is past. This Charter-Seq flight is closed. | Wednesday, 03-31-21 | Flight arrives in -18 days. | Winterhoff_003 | Departed | 8 | 3/31/2021 | 4/2/2021 | |
18 | Masopust_032_033/Vezys_006 | Departed | 7 | 3/31/2021 | 4/2/2021 | ||||||||
19 | Li_004 | Departed | 2 | 3/31/2021 | 4/2/2021 | ||||||||
20 | Kelekar_003 | Departed | 2 | 3/31/2021 | 4/2/2021 | ||||||||
21 | Springer_080 | Departed | 28 | 3/31/2021 | 4/2/2021 | ||||||||
22 | 3/31/2021 | 4/2/2021 | |||||||||||
23 | 3/31/2021 | 4/2/2021 | |||||||||||
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28 | Thursday, 04-01-21 | Will depart in -17 days. | Boarding | Thursday, 03-18-21 | Cutoff date is past. This Charter-Seq flight is closed. | Wednesday, 05-05-21 | Flight arrives in 17 days. | Moreau_002 | Pre-Flight Checks | 2 | |||
29 | Kassie_011 | Pre-Flight Checks | 6 | ||||||||||
30 | Whitley_002 | Pre-Flight Checks | 2 | ||||||||||
31 | Springer_081 | Pre-Flight Checks | 3 | ||||||||||
32 | Noh_001 | Pre-Flight Checks | 6 | ||||||||||
33 | Ryu_004 | Pre-Flight Checks | 3 | ||||||||||
34 | Munderloh_006 | Pre-Flight Checks | 3 | ||||||||||
35 | Bierle_014 | Pre-Flight Checks | 6 | ||||||||||
36 | Cvetanovic_012 | Pre-Flight Checks | 5 | ||||||||||
37 | Cvetanovic_013 | Pre-Flight Checks | 2 | ||||||||||
38 | Winterhoff_004 | Pre-Flight Checks | 2 | ||||||||||
39 | Carter_015 | Pre-Flight Checks | 6 | ||||||||||
40 | Tolar_021 | Pre-Flight Checks | 2 | ||||||||||
41 | Monday, 05-03-21 | Will depart in 15 days. | Taking Reservations | Monday, 04-19-21 | You have 1 days remaining to submit samples for flight. | Wednesday, 06-02-21 | Flight arrives in 45 days. | Huang9_001 | Pre-Flight Checks | 2 | |||
42 | Scarisbrick_003 | Pre-Flight Checks | 6 | ||||||||||
43 | Osorio_009 | Pre-Flight Checks | 2 | ||||||||||
44 | Williams4_010 | Pre-Flight Checks | 4 | ||||||||||
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51 | |||||||||||||
52 | Tuesday, 06-01-21 | Will depart in 44 days. | Tuesday, 05-18-21 | You have 30 days remaining to submit samples for flight. | Thursday, 07-01-21 | Flight arrives in 74 days. | |||||||
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62 | Thursday, 07-01-21 | Will depart in 74 days. | Thursday, 06-17-21 | You have 60 days remaining to submit samples for flight. | Saturday, 07-31-21 | Flight arrives in 104 days. | |||||||
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66 | |||||||||||||
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69 | |||||||||||||
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71 | |||||||||||||
72 | FAQ: | ||||||||||||
73 | 1) How do I reserve my seats and how many seats can I request? | ||||||||||||
74 | Reserve your seats by emailing your request to next-gen@umn.edu. You can request as many seats as you need as long as you are purchase a minimum of 16 seats and groups of 8 seats thereafter. The flight has a maximum of 384 seats. | ||||||||||||
75 | |||||||||||||
76 | 2) What are the charges? | ||||||||||||
77 | Library preparation and sequencing @ 20M read depth is $179 for UofMN researchers. External users can board the flight for $205. Extra baggage (additional 20M reads) costs $100. | ||||||||||||
78 | |||||||||||||
79 | 3) What samples are acceptable? | ||||||||||||
80 | We accept eukaryotic total RNA samples only for this service. No bacterial or Ribozero service is currently being offered. | ||||||||||||
81 | |||||||||||||
82 | 4) Do you perform QC on samples? | ||||||||||||
83 | Yes, the UMGC provides QC services for all RNA-seq samples. Samples MUST be pre-validated before they are accepted for the Charter Service. | ||||||||||||
84 | |||||||||||||
85 | 5) What is the deadline for submission? | ||||||||||||
86 | 2 weeks (10 working days) prior to the flight date. This allows UMGC the opportunity to perform sample QC and obtain replacement samples, if necessary. | ||||||||||||
87 | |||||||||||||
88 | 6) Can I request Express Service for Charter-Seq? | ||||||||||||
89 | There is no Express service. The dates are set. | ||||||||||||
90 | |||||||||||||
91 | 7) How do I request this service? | ||||||||||||
92 | Please refer to this Google Doc to see the availibility of the next run. | ||||||||||||
93 | |||||||||||||
94 | 8) What if I miss the deadline for submission? | ||||||||||||
95 | You will have the option of having your samples processed using our standard RNA-seq service and purchasing a separate lane of sequencing. Or, you can wait until the next Charter Service flight. | ||||||||||||
96 | |||||||||||||
97 | 9) This is great, but I can't seem to get on a Charter-Seq run because they fill up too fast. | ||||||||||||
98 | We have the ability to increase the frequency of Charter Service runs, and will do so if we find that demand justifies it. | ||||||||||||
99 | |||||||||||||
100 | 10) I still have questions. Who can I contact? | ||||||||||||
101 | Please contact Elyse Froehling or Aaron Becker at next-gen@umn.edu for questions regarding this service. | ||||||||||||