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TimestampTypeTitleURLDescription
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3/24/2015 13:31:39
Open Access (journals, etc.)
Directory of Open Access Journalshttp://doaj.orgSearch DOAJ
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3/24/2015 20:07:40
Open Data (repositories, etc.)
U.S. Open Government Datahttp://www.data.govSearch Data.gov
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3/24/2015 20:36:27
Open Data (repositories, etc.)
DataCitehttps://www.datacite.org
Search Databib and re3data.org
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3/24/2015 20:39:55
Open Data (repositories, etc.)
Databib Repositories
https://docs.google.com/spreadsheet/ccc?key=0AoLuWEbu78KydExwNjZLSU9PUDhKQkRMNU0yUGxRQ3c
Google Sheet
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3/24/2015 20:45:39
Open Source (software, etc.)
Bioconductorhttp://bioconductor.orgBioinformatics
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3/24/2015 20:57:16
Open Data (repositories, etc.)
Allen Brain Atlas
http://www.brain-map.org
Search Atlases
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3/24/2015 21:12:22
Open Source (software, etc.)
UCSC Genome Browserhttp://genome.ucsc.eduBioinformatics
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3/27/2015 10:48:36
Open Data (repositories, etc.)
The Human Protein Atlas
http://www.proteinatlas.org
Proteomics
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5/26/2015 14:22:53
Open Data (repositories, etc.)
NASA GeneLab
https://c3.nasa.gov/genelab
Space Biology
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6/14/2015 13:58:03
Open Source (software, etc.)
Mozilla Science Lab
https://www.mozillascience.org
Open Web
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6/14/2015 14:00:48
Open Source (software, etc.)
Open Science Frameworkhttps://osf.ioProject Management
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6/22/2015 12:42:50
Open Data (repositories, etc.)
Google Public Data Explorer
http://www.google.com/publicdata/directory
Data Visualization
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6/24/2015 8:20:46
Open Source (software, etc.)
Google Genomics
https://cloud.google.com/genomics/
Cloud Platform
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6/24/2015 8:25:32
Open Source (software, etc.)
Genome Analysis Toolkit (GATK)
https://www.broadinstitute.org/gatk/
High-throughput sequencing
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6/27/2015 7:40:29
Open Source (software, etc.)
DARPA XDATA
http://opencatalog.darpa.mil/XDATA.html
Open Catalog
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7/9/2015 13:43:40
Open Data (repositories, etc.)
The One Repohttp://onerepo.netIndex Data
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1/6/2016 13:46:20
Open Health (medicine, etc.)
St. Jude PeCan Data Portalhttps://pecan.stjude.orgProteinPaint
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1/18/2016 9:26:06
Open Source (software, etc.)
Thermo Fisher Cloud
https://www.thermofisher.com/us/en/home/cloud.html
Storage
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1/18/2016 9:29:24
Open Source (software, etc.)
Thermo Omics Portal
http://portal.thermo-brims.com
Downloads
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3/14/2016 8:27:07
Open Source (software, etc.)
The Galaxy Projecthttp://galaxyproject.orgBioinformatics
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3/31/2016 16:05:35
Open Data (repositories, etc.)
The Cancer Genome Atlas (TCGA)
http://cancergenome.nih.gov
Clinical information, genomic characterization data and high level sequence analysis of tumor genomes
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3/31/2016 16:10:39
Open Data (repositories, etc.)
Cancer Genomics Hub (CGHub)https://cghub.ucsc.edu
BAM files and metadata for sequencing data
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3/31/2016 16:53:38
Open Health (medicine, etc.)
My Cancer Genome
https://www.mycancergenome.org
Personalized cancer medicine knowledge resource
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3/31/2016 17:04:57
Open Source (software, etc.)
IMPACT Analysis Pipeline
http://tanlab.ucdenver.edu/IMPACT
Integrating Molecular Profiles with ACtionable Therapeutics
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3/31/2016 19:09:34
Open Source (software, etc.)
EMBL-EBI Services
http://www.ebi.ac.uk/services
Molecular databases
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4/1/2016 14:51:02
Open Health (medicine, etc.)
OMIMhttp://omim.org
Online catalog of human genes and genetic disorders
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4/1/2016 14:57:35
Open Health (medicine, etc.)
PharmGKB
https://www.pharmgkb.org
Pharmacogenomics knowledge base
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4/15/2016 10:51:52
Open Data (repositories, etc.)
Data USAhttp://datausa.ioPublic data vizualization
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5/7/2016 7:59:15
Open Source (software, etc.)
Microreacthttp://microreact.org
Hierarchical and Geographical Analysis Tool
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5/13/2016 17:23:03
Open Source (software, etc.)
Cancer Cell Map Initiativehttp://www.ccmi.org
Network-based precision medicine
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5/24/2016 16:22:59
Open Data (repositories, etc.)
STRINGhttp://string-db.org
Functional protein association networks
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6/2/2016 11:30:16
Open Data (repositories, etc.)
sORFshttp://sorfs.org
Repository of small ORFs identified by ribosome profiling
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8/19/2016 10:04:33
Open Data (repositories, etc.)
GigaDBhttp://gigadb.orgDOI datasets
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8/19/2016 10:17:39
Open Data (repositories, etc.)
BioSharinghttps://biosharing.org
Databases, policies and standards
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8/19/2016 10:25:32
Open Access (journals, etc.)
Paperityhttp://paperity.org
Multi-disciplinary aggregator of Open Access journals and papers
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8/22/2016 8:31:15
Open Access (journals, etc.)
arXivhttps://arxiv.org
E-print service by Cornell University
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8/22/2016 8:57:17
Open Access (journals, etc.)
bioRxivhttp://biorxiv.org
Preprint server for biology by Cold Spring Harbor Laboratory
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8/22/2016 9:01:36
Open Data (repositories, etc.)
Simons Genome Diversity Project Dataset
https://www.simonsfoundation.org/life-sciences/simons-genome-diversity-project-dataset
Complete genome sequences from more than one hundred diverse human populations
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8/22/2016 10:18:26
Open Access (journals, etc.)
PubSpace
http://www.ncbi.nlm.nih.gov/pmc/funder/nasa
NASA articles in PubMed Central
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8/22/2016 12:08:34
Open Data (repositories, etc.)
Kaggle Datasets
https://www.kaggle.com/datasets
Publicly-available data
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10/11/2016 8:20:48
Open Data (repositories, etc.)
Genomic Data Commonshttps://gdc.cancer.gov
The Next Generation Cancer Knowledge Network
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10/15/2016 12:27:02
Open Data (repositories, etc.)
Cancerrxgene
http://www.cancerrxgene.org
The Genomics of Drug Sensitivity in Cancer Project
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10/15/2016 12:36:21
Open Data (repositories, etc.)
Cancer Cell Line Encyclopedia (CCLE)
https://portals.broadinstitute.org/ccle/home
Genomic data, analysis and visualization tools
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10/17/2016 13:02:56
Open Source (software, etc.)
Beacon Network
https://beacon-network.org
Global search engine for genetic mutations
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10/25/2016 15:43:42
Open Source (software, etc.)
M-CAP
http://bejerano.stanford.edu/mcap
Mendelian Clinically Applicable Pathogenicity Score
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10/28/2016 12:14:28
Open Source (software, etc.)
TheCellMaphttp://thecellmap.org
Global Genetic Interaction Network
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11/16/2016 10:11:02
Open Source (software, etc.)
A.I. Experiments
https://aiexperiments.withgoogle.com
Explore machine learning
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11/21/2016 16:13:28
Open Source (software, etc.)
ExAC Browser
http://exac.broadinstitute.org
Exome Aggregation Consortium
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11/30/2016 10:28:06
Open Data (repositories, etc.)
3D Atlas of Human Embryology
http://www.3dembryoatlas.com
Interactive 3D-PDFs of all organ systems
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1/27/2017 13:40:04
Open Data (repositories, etc.)
DataRefuge
https://www.datarefuge.org
Federal Climate & Environmental Data
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2/8/2017 13:26:44
Open Data (repositories, etc.)
LOD cloudhttp://lod-cloud.net
Linking Open Data cloud diagram
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3/6/2017 10:24:19
Open Data (repositories, etc.)
WMPD Report
https://nsf.gov/statistics/wmpd
Women, Minorities, and Persons with Disabilities in Science and Engineering
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3/24/2017 10:52:10
Open Data (repositories, etc.)
S&E Indicators 2016
https://www.nsf.gov/statistics/2016/nsb20161
A broad base of quantitative information on the U.S. and international science and engineering enterprise
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4/25/2017 15:36:20
Open Data (repositories, etc.)
Repositivehttps://repositive.io
Human genomic datasets
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4/25/2017 16:24:49
Open Source (software, etc.)
EDGE
https://lanl-bioinformatics.github.io/EDGE
Empowering the Development of Genomics Expertise
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5/10/2017 8:35:58
Open Source (software, etc.)
ClinVar
https://www.ncbi.nlm.nih.gov/clinvar
Aggregates information about genomic variation and its relationship to human health
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5/22/2017 20:44:03
Open Source (software, etc.)
Bio Model Analyzer (BMA)
http://biomodelanalyzer.org
Biological modelling tool that illustrates signalling pathways and determines cellular stabilization
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6/7/2017 13:52:03
Open Data (repositories, etc.)
Gene Expression Omnibus (GEO)
https://www.ncbi.nlm.nih.gov/geo
Public functional genomics data repository
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6/29/2017 8:19:18
Open Source (software, etc.)
The Literome Project
http://literome.azurewebsites.net
Automatic curation system to extract genomic knowledge from PubMed articles
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6/29/2017 8:23:45
Open Source (software, etc.)
Gene Interactions
https://genome.ucsc.edu/cgi-bin/hgGeneGraph
Gene interactions and pathways from curated databases and text-mining
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6/29/2017 8:27:43
Open Source (software, etc.)
MOSAIChttp://mosaicbiome.com
Cloud-based microbiome informatics platform
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7/5/2017 21:31:05
Open Source (software, etc.)
World Well-Being Projecthttp://wwbp.org
Advancing understanding of human flourishing using language analysis
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7/5/2017 21:49:47
Open Source (software, etc.)
DeepSEA
http://deepsea.princeton.edu
Deep learning-based algorithmic framework for predicting the chromatin effects of sequence alterations with single nucleotide sensitivity
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6/14/2018 13:50:46
Open Data (repositories, etc.)
Berkeley Deep Drive
http://bdd-data.berkeley.edu
World's Largest Self-Driving Dataset
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6/22/2018 13:27:06
Open Data (repositories, etc.)
HappyDB
https://rit-public.github.io/HappyDB/
Corpus of 100,000 crowd-sourced happy moments
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6/30/2018 6:49:24
Open Data (repositories, etc.)
Earth Microbiome Project (EMP)
http://earthmicrobiome.org
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7/24/2018 12:32:16
Open Data (repositories, etc.)
Database of Genotypes and Phenotypes (dbGaP)
https://www.ncbi.nlm.nih.gov/gap
Archive of the interaction of genotype and phenotype in Humans
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7/24/2018 12:48:49
Open Health (medicine, etc.)
Genomics Evidence Neoplasia Information Exchange (GENIE)
https://aacr.org/Research/Research/Pages/aacr-project-genie.aspx
Precision oncology
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7/24/2018 12:53:18
Open Health (medicine, etc.)
Catalogue Of Somatic Mutations In Cancer (COSMIC)
https://cancer.sanger.ac.uk/cosmic
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8/16/2018 13:10:13
Open Health (medicine, etc.)
Georgetown Database of Cancer (G-DOC)
https://gdoc.georgetown.edu
Precision medicine platform
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8/17/2018 13:49:32
Open Health (medicine, etc.)
Agora
http://agora.ampadportal.org
Nascent AD associated drug targets
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9/7/2018 8:09:23
Open Health (medicine, etc.)
MD.aihttps://www.md.ai
The platform for medical AI
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