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University of Wyoming QIIME2 Workshop
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iMac Lab, AG316
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October 24, 2019October 25, 2019
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slidesslides
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9:00Coffee, Introductions Coffee, and discussions
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9:30Introduction to microbial ecology, microbiome analysis and QIIME 2 core concepts
Followed by 10 minute bathroom break		β-diversity Metrics, Statistics, and Visualizations
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10:00Taxonomy Assignment, training classifiers, reference databases, and Visualizations, filtering non-target taxa (filtering tutorial)
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10:30
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11:00Connect to the AmazonWeb, Linux refresher
Introduction to differential abundance and issues, ANCOM
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11:30Atacama desert tutorial
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12:00Lunch and discussion!Lunch and discussion!
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12:30
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13:00Sample Metadata, Moving Pictures of the Human Microbiome, Keemei
Followed by 10 minute bathroom break		Introduction to supervised learning with q2-sample-classifier
Followed by 10 minute bathroom break
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13:30Importing, Demultiplexing, Quality Control, ESVs and OTU clustering, Dada2 and Deblur
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14:00Overview of additional QIIME2 tutorials, explore tutorials
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14:30Coffee break, open time for discussion with instructors
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15:00Coffee break, open time for discussion with instructorsLocal installation of qiime2, getting started on your own data sets
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15:30rarefaction, phylogenetic trees, α-diversity
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16:00QIIME forum, Plugin Library, Q & A
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16:30Open time for individual discussion with instructors and group question and answer session.
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17:00end of day 1end of day 2
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