CSU qiime2 workshop agenda
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CSU QIIME2 Workshop November 19-20th, 2018
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Smith Alumni Center, seminar room 2
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November 19, 2018November 20, 2018
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slidesslides
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9:00Coffee, Introductions Coffee, and discussions
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9:30Introduction to microbial ecology, microbiome analysis and QIIME 2 core concepts (Jessica). Followed by 10 minute bathroom breakβ-diversity Metrics, Statistics, and Visualizations (Se Jin)
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10:00Taxonomy Assignment, training classifiers, reference databases, and Visualizations, filtering non-target taxa (filtering tutorial) (Jessica)
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10:30
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11:00Connect to the AmazonWeb, Linux refresher (Se Jin)
Introduction to differential abundance and issues, ANCOM (Se Jin)
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11:30Atacama desert tutorial (Jessica)
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12:00Lunch and discussion!Lunch and discussion!
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12:30
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13:00Sample Metadata, Moving Pictures of the Human Microbiome, Keemei (Se Jin) Followed by 10 minute bathroom breakIntroduction to supervised learning with q2-sample-classifier (Aeriel) Followed by 10 minute bathroom break
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13:30Importing, Demultiplexing, Quality Control, ESVs and OTU clustering, Dada2 and Deblur (Jessica)
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14:00Overview of additional QIIME2 tutorials, explore tutorials (Jessica)
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14:30Coffee break, open time for discussion with instructors
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15:00Coffee break, open time for discussion with instructorsLocal installation of qiime2, getting started on your own data sets
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15:30rarefaction, phylogenetic trees, α-diversity (Aeriel)
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16:00QIIME forum, Q & A
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16:30Open time for individual discussion with instructors and group question and answer session.
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17:00end of day 1end of day 2
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