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NameAnalysisProject LeaderLesson #When to presentLevel
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Presentedon
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Microsatellites - how to process the data from the very beginning (= from sequencer raw data)
GeneMarker, MSA, Structure, R
Gábi1at Lesson 2basic
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Microsatellites - how much loci is enough? Looking for differences in results based on using different loci.
MSA, Structure, RGábi1at Lesson 2basic
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Diploid-tetraploid population structure in Arabidopsisanalysis of SNP in RJakub+Filip2at Lesson 5intermediateBety24.11.
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Population structure among diploid Arabidopsis (Structure, NNet from new data)analysis of SNP in RFilip+Jakub2at Lesson 5basicPavel8.12.
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Comparing phylogenies based on differently trimmed alignmentsPavel3at Lesson 4basic
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Comparing analyses based on different partitioning/substitution modelsPavel3at Lesson 4basic
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DNA delimitation (own dataset welcomed) based on GMYC, bPTPPavel3at Lesson 4intermediate
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Concordance/discordance of gene trees and species tree - PhyPartsPhyPartsEliška4at Lesson 5intermediateBijay5.1.
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Detection of hybrids using multiple gene trees - PhyloNetPhyloNetEliška4at Lesson 5intermediateEliška8.12.
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Hyb-Seq - selection best loci for phylogenyTomáš5at Lesson 6intermediateValeriy5.1.
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Hyb-Seq - species tree building methods (effect of data filtering on support)Tomáš5at Lesson 6intermediate
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Trait analysis - comparison of approaches for discrete-continuous dataTomáš5at Lesson 6intermediateSonia5.1.
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Hyb-Seq - species tree estimation and analysis of gene tree conflict
Summary methods (ASTRAL), concatenation methods (FastTree, RAxML), gene tree discordance (phyparts)
Juanma5at Lesson 6basicRoel5.1.
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Identifying gene flow events in a species tree with DSuiteASTRAL, DSuiteMaria5at Lesson 6intermediateTerka5.1.
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Students, do you have own idea for a project? With provided or own dataset? Just write it here and we will discuss its feasibility at the course
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Trait evolution (Lamiaceae)Tomáš5at Lesson 6intermediateChonour5.1.
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