ABCDEFGHIJKLMNOPQRSTUVWXYZ
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Field nameDescriptionData typeScope / ExampleCardinalityNB NullsNotes 1
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SampleSample namestringHG00096 - NA2114435000
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Family IDFamily IDstringHG00096, 1328, Y12019960
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PopulationPopulationstringACB - YRI260
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Population Descriptionstring
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GenderGenderstringfemale (1760), male (1740)20
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Relationshipstring30
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Unexpected Parent/Child string40
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Non Paternitystring9
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Siblingsstring67
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Grandparentsstring9
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Avuncularstring47
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Half Siblingsstring10
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Unknown Second Orderstring61
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Third Orderstring42
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Other Commentsstringall NULL03500
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In Low Coverage Pilot
18
LC Pilot Platforms
19
LC Pilot Centers
20
In High Coverage Pilot
21
HC Pilot Platforms
22
HC Pilot Centers
23
In Exon Targetted Pilot
24
ET Pilot Platforms
25
ET Pilot Centers
26
Has Sequence in Phase1
27
Phase1 LC Platform
28
Phase1 LC Centers
29
Phase1 E Platform
30
Phase1 E Centers
31
In Phase1 Integrated Variant Set
32
Has Phase1 chrY SNPS
33
Has phase1 chrY Deletions
34
Has phase1 chrMT SNPs
35
Main project LC Centers
36
Main project LC platform
37
Total LC Sequence
38
LC Non Duplicated Aligned Coverage
39
Main Project E Centers
40
Main Project E Platform
41
Total Exome Sequence
42
% Targets Covered to 20x or greater
43
VerifyBam E Omni Free
44
VerifyBam E Affy Free
45
VerifyBam E Omni Chip
46
VerifyBam E Affy Chip
47
VerifyBam LC Omni Free
48
VerifyBam LC Affy Free
49
VerifyBam LC Omni Chip
50
VerifyBam LC Affy Chip
51
LC Indel Ratio
52
E Indel Ration
53
LC Passed QC
54
E Passed QC
55
In Final Phase Variant Calling
56
Has Omni Genotypes
57
Has Axiom Genotypes
58
Has Affy 6.0 Genotypes
59
Has Exome/LOF Genotypes
60
EBV Coverage
61
DNA Source from Coriell
62
Has Sequence from Blood in Index
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
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90
91
92
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94
95
96
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98
99
100