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ABCDEFG
1
TraineeLevelTime TrainedPrevious InstituteHighest DegreeTitle of Research ProjectCurrent Position
2
Peter MosselAnalyst1985-1990Uni WisconsinPh.D.Clinical decision supportSoftware Engineer, TD Ameritrade
3
Janie WeissProgrammer1987-1994Columbia UniversityB.A.Manage computer facilitiesHead of Cancer Center Compute Facility, Columbia University
4
Susan KislerProgrammer1991-1994Columbia UniversityB.A.Database developer tumor registryDatabase lead, Columbia University
5
Ilya ShindyalovPostdoc1992-2005Novosibirsk State UniversityPh.D.Structural genomics and protein databasesPrivate Consultant
6
Weider ChangPostdoc1992-1995Cornell UniversityPh.D.Object oriented database development Analyst Advanced IT Solutions
7
Jamshed CooperProgrammer1992-1995Columbia UniversityM.S.Website developmentDirector Merill Lynch
8
John BiggsProgrammer1993-1995Columbia UniversityB.S.Database developmentUnknown
9
Misha PonomarenkoPostdoc1996-1998Novosibirsk State UniversityPh.D.Protein-protein interactionsProf. Uni of Novosibirsk
10
Wolfgang BluhmPostdoc1996-2000UC San DiegoPh.D.Length-History Dependence of Myocardial ContractionProduction Manager Protein Data Bank, SDSC/UCSD
11
Gregory QuinnPostdoc1997-2000South Hampton Univ., UKPh.D.High Throughput Proteome AnnotationProgrammer Analyst, Protein Data Bank, SDSC/UCSD
12
Chris SmithPostDoc1998-2002Uni of NebraskaPh.D.Protein kinase resourcesProgram manager UCSD
13
John BadgerPostdoc1998-2002Durham University Ph.D.Protein structure alignmentsStructural Bioinformatics Staff Scientist
14
Peng YangProgrammer1999-2001B.S.Knowledge integrationSenior Analyst, Security
15
David MartinezProgrammer1999-2002B.S.Systems Administration
16
Murli NairPostdoc1999-2001Univ. of Poona, IndiaPh.D.The Effect of Post-translational Modifications on StructureAsst. Prof., Indianan Univ., Southbend
17
Dave HartDesigner1998-1999Carnegie MellowM.S.Co-author Mac Book and graphics artistUser Services Manager NCAR
18
BVB ReddyPostdoc1998-1999Univ. of Hyderabad Ph.D.Protein Structure Prediction Based on Key Conserved Amino Acid PositionsAssociate Prof., City Univ. of New York
19
Eric ScheeffPostdoc1998-2005UC San DiegoPh.D.Multiple Alignments of Protein Strucures and Their Application to Sequence Annotation with Hidden Markov ModelsScientist, Salk Institute
20
Kenneth YoshimotoPostdoc1998-2000UC IrvinePh.D.PDB Software DevelopemntResearch Scientist, Montana State Univ.
21
Kutbuddin DoctorPostdoc1999-2003John Hopkins University Ohio State UniversityPh.D.Study of Domains Associated with ApoptosisScientist, The Burnahm Institute
22
Glenn OteroPostdoc1999UCLA University of IlinoisPh.D.PDB OutreachDir. Of Bioinformatics, Science Application International Corp.
23
John TatePostdoc1999-2002University of Oxford, UK Ph.D.Collaborative Molecular VisualizationScientist Oxford University
24
Jenny GuPostdoc2000-2006UC Berkeley
UC San Diego
Ph.D.Primary Sequence Patterns in Protein DynamicsHumbolt Fellow, University of Muenster, Germany
25
Kudbittin DoctorPostdoc2000-2003Johns Hopkins UniversityPh.D.Apoptotic domainsSenior scientist, Sanford Burnham Inst.
26
Wilfred LiPostdoc2000-2004University of So. CaliforniaPh.D.Proteome Annotation using the GridDir., National Biomedical Computation Resource, SDSC/UCSD
27
Apostol GramadaPostdoc2000 - 2011U of Utah
U of Bucharest
Ph.D.New Representations of Protein StructureAsst. Project Scientist, UC San Diego
28
Helge WeissigPostdoc2002-2005Albert-Ludwig University GermanyPh.D.Bias within the Protein Data BankDir. Of Bioinformatics, ActivX Biosciences
29
Kristine BriedisPostdoc2001-2008UC San Diego
Iowa State University
Ph.D.Co-evolution of Kinases and PhosphatasesScientist, Accelrys
30
Jo Lan ChungPostdoc2001-2006National Taiwan University UC San DiegoPh.D.Protein-protein interactionsScientific annotator Flybase Project Stanford University
31
John KowalskiProgrammer2001-2003U. Nevada Las vegasB.S.System AdministratorSystems Admin, Uni Nevada
32
David PadillaProgrammer2001-2003UCSDB.S.PDB programmerProgrammer, UCSD
33
Song YangPostdoc2001-2009Peking University
UC San Diego
Ph.D.Evolution Studied Through Protein Structural DomainPost Doc, Univ. of Washington
34
Douglas GreerPostdoc2002-2003UC San DiegoPh.D.Object-based Tools for Protein Structure AnalysisPresident, General Manifolds LLC
35
Charlie AllerstonPredoc2003-2004York UniversityM.S.Structure genomics analysisScientist, Oxford University
36
Ward FleriManager2003-2006Brown UniversityPh.D.Manage PDB projectManager, LIAI
37
Dimitry PekurovskyProgrammer2003-2004M.S.Parallel program developmentProgrammer Analyst, UCSD/SDSC
38
Vicente ReyesPostdoc2002-2006California Institute Of TechnologyPh.D.Active Site PredictionPostdoctoral Scholar UC San Diego
39
Tammy BattistuzArtist2002-2005B.A.Website designWeb developer, Union Tribune
40
Paul CraigSabattical2002Rochester ITPh.D.Macromolecular visualizationProf. RIT
41
Ayelet StarrPredoc2003-2006UC San Diego
Bioengineering
M.S.Further exploration of the Human KinomeUnknown
42
Charlie Knezevich
Systems Manager
2003-2006UCSDB.S.Systems AdministrationUnknown
43
Nita DeshpandePostdoc2004-2006UT AustinPh.D.Protein database developerSenior Developer, Prescientsoft
44
Robert ByrnesPostdoc2004-2005Ph.D.Encyclopedia of Life projectUnknown
45
Kenneth AddessPostdoc2005-2007UC Los AngelesPh.D.protein sequence-structure relationshipsSenior programmer, NCBI
46
Ruben ValasPredoc2006-2010Carnegie Mellon Univ.B.S.Evolution of Bacterial ProteasomesPostdoctoral Fellow, J. Craig Venter Institute
47
Jian WangPredoc2008-PresentUC BerkeleyB.S.Analysis of Protein Functional Site to Predict Drug off-TargetsGraduate Student, NIH
48
Ann KullerPreDoc1999-2002Lion BiosciencesM.S.BioSync - A Web resource for the synchrotron communityPrometheus
49
Chittibabu GudaPostdoc2000-2006ANGR Agricultural
University, India
Ph.D.Multiple structure comparison an dalignmentAsst. Prof. Uni of Albany
50
John MorelandProgrammer2001-2007San Diego State UniM.S.Visualization toolsSenior Analyst San Diego Supercomputer Center
51
Jeff Merino OttPreDoc2002 - 2007California PolytechnicB.S.Redesign of the RCSB PDBTaylorMade-addidas Golf
52
Wayne Townsend-Merino
PreDoc 2002 - 2009 SDSUM.S.Redesign of the RCSB PDBLBL
53
Stella VeretnikPostDoc2002-Uni of MinnesotaPh.D.Protein domains
54
Shawn StrandeManager2002-2005SDSUB.S.project ManagerTean Leader, SDSC
55
Eliot ClingmanProgrammer2002-2005U. PennB.A.Developer of PDBAudit Integrity Inc
56
David StonerProgrammer2002-2006UCSDB.S.Developer of PDBDeseased
57
P. GudaPostdoc2003-2005Ph.D.Voltage gated channel proteins
58
Werner KrebsPostdoc2003-2004Yale UniversityPh.D.Protein Structure Comparison and AnalysisFinancial Consultant
59
Yuting JiaPostdoc2003-2005Ph.D.Scoring FunctionsUnknown
60
Kenneth AddessPostdoc2003 - 2005Univ of CA, Los AngelesPh.D.Sequence-structure analysisScientist, NCBI, NLM
61
Quian Ye ZhangPostDoc2005-2007Ph.D.Visualization programmer
62
John BeaverPreDoc 2005 - 2007Univ of CA, San DiegoB.S.The Molecular Biology ToolkitHarvard
63
Lei XieSenior Sci2005-2011Rutgers Univ.Ph.D.Proten drug interactionsAssoc Prof CUNY
64
Jeff MiltonPreDoc2005 - 2007Carnegie Mellon Univ.B.S.Educational Services for the RCSB PDBGenentech
65
Joe MulvanyPreDoc
Summer 2004
Univ of York, UKB.S.Sequence-structure AnalysisUCSF
66
Noah OllikainenUndergrad2006UCSDComparative dockingGraduate student, UCSF
67
Daniel GoodmanUndergrad2006UCSDComparative dockingGraduate Student MIT
68
Cathy ChangUndergrad2006UCSDProtein modeling
69
Lynn FinkPostDoc2006-2010UCSDPh.D.Scholarly communicationSenior scientist, Uni of Queensland
70
Zhanyang Zhu PreDoc2006 - 2010Birkbeck CollegePh.D.Epitope predictionGroup Leader, Sequenon
71
Tim BeckPreDoc2005-2007UCSDB.S.PDB systems admin and software developmentElectrical Engineer, ViaSat
72
Tim HollandPreDoc2005-2007UCSDB.S.Protein domain analysis
73
Manuel CorpusPredoc2007Uni of ManchesterPh.D.Structural genomicsConsultant EBI
74
Chris DupontPreDoc2005-2009UCSDPh.D.Evolutionary geochemistryGroup Lead, JCVI
75
Bojan BeranPreDoc2006-2011UCSDB.S.Sys Adm and Graphic DesignerLead Web Developer, Kit Digital
76
Haley Hunter-ZinckUndergrad2008UCSDOff-target drug effects
77
Kingston FungUndergrad2008-2010UCSDVarious programming tasks around the PDB
78
Maria KontoyianniPostDoc2008UNCPh.D.Protein-ligand interactionsAsst. Prof., Southern IL Univ. Edwardsville
79
Charlotte AndersonPreDoc
Summer 2008
Univ of York, UKM.S.Domain Rearrangements from Protein StructureUnknown
80
Scott LindsayPostDoc
Summer 2008
Univ of York, UKM.S.Study of Nucleosome StructureUnknown
81
Thomas EvangelidisPreDoc
Summer 2008
Univ of York, UKM.S.Competitive Binding of Major PharmaceuticalsU of Athens
82
Li XiePostDoc2009-
Uni of Sci & Technology, China
Ph.D.Molecular dynamicsCurrent Postdoc
83
Parker WilliamsPreDoc2008-2009UCSDB.S.Sematic Mark-up, XML Formatting, Submission of Scholarly ArticlesUnknown
84
Ben YukichPreDoc2009-2011UCSDB.S.Sys AdmDeveloper, Service-now.com
85
Natalie DawsonPreDoc
Summer 2009
Univ of York, UKM.S.Evolution of Domain Associations in tRNS SynthetasesUnknown
86
Kieran AldenPreDoc
Summer 2009
Univ of York, UKM.S.Building a meta-method to examine proteinsGraduate Student, Univ of York, UK
87
Qian Yi ZhangPreDoc
Summer 2009
Univ of York, UKM.S.Physical Model of Nucleasome Organization Towards Genome AnnotationGraduate Student, Univ of Birmingham, UK
88
Nikitas Papangelopoulos
PreDoc
Summer 2007
Univ of York, UKM.S.Looking for Correlation between Protein and Gene StructuresSRA III, UCSD
89
Sarah Kinnings PreDoc
Summer 2007
Univ of York, UKM.S.Competitive Binding of Major PharmaceuticalsPostdoc UCSD
90
Philippe YoukhabachieScientist2007-Ph.D.Protein pseudosymmetryScientist,
91
Ricky LazanoUndergrad2010UCSDDrug targetingGraduate student UCSD
92
Roger ChangPreDoc2010-UCSDB.S.Systems Biology & drug discovery
93
Jim BergerProgrammer2010B.S.visualization programerConsultant
94
Crystal KuPreDocWinter 2010UCSDB.S.Drugs targeting DNAGraduate student UCSD
95
Allan WuPreDocSpring 2010UCSDB.S.Exome sequencing and disease treatmentGraduate student UCSD
96
Spencer BlivenPreDocWinter 2010UCSDB.S.Understanding protein fold spaceGraduate student UCSD
97
Sarah Kinnings PostdocSummer/Fall
2009
Univ of Leeds, UKPh.D.Competitive Binding of Major PharmaceuticalsGraduate Student, Univ of Leeds, UK
98
Satnam Surae PreDoc
Summer 2010
Univ of York, UKM.S.Repositioning existing drugs for the treatment of diseases associated with PaeruginosaGraduate Student, Conway Institute, Ireland
99
Kanal DhirPreDoc
Summer 2010
Univ of York, UKM.S.Protein structure visualization
100
Xialong QiuUndergrad
Summer 2011
UCSDDrug targeting
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