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Supporting Information for
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Segregation patterns and inheritance rate of Copy Number Variations regions assessed in a Gochu Asturcelta pig pedigree
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Katherine D. Arias, Juan Pablo Gutiérrez, Iván Fernandez, Nuria A. Menéndez-Arias, Isabel Álvarez, and Félix Goyache*
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*To whom correspondence and requests should be addressed (e-mail: fgoyache@serida.org)
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This .xlsx file includes:
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Supplementary Table S1: List of Copy Number Variations (CNV) identified using the software PennCNV.
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Supplementary Table S2. List of Copy Number Variations (CNV) identified using the software QuantiSNP.
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Supplementary Table S3: List of CNV Regions identified using the software PennCNV.
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Supplementary Table S4: List of CNV Regions identified using the software QuantiSNP.
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Supplementary Table S5: List of candidate Copy Number Variations Regions (CNVR) identified.
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Supplementary Table S6: List of candidate CNVR identified in each individual of the pedigree used.
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Supplementary Table S7: Details on data used to compute (paternal and maternal) transmission rates and inheritance rate.
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Supplementary Table S8: List of potential segregating CNVR identified with the program PennCNV in each individual of the pedigree used.
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Supplementary Table S9: List of potential segregating CNVR identified with the program QuantiSNP in each individual of the pedigree used.
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Supplementary Table S10: Overlap of segregating candidate CNVR identified in Gochu Asturcelta pig using either the PennCNV (P_CNVR) or the QuantiSNP software (Q_CNVR).
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Supplementary Table S11: Details on the computation of (paternal and maternal) transmission rates and inheritance rate based on the potential sCNVR identified using PennCNV.
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Supplementary Table S12: Details on the computation of (paternal and maternal) transmission rates and inheritance rate based on the potential sCNVR identified using QuantiSNP.
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