cbb752_schedule_spring_2014
 Share
The version of the browser you are using is no longer supported. Please upgrade to a supported browser.Dismiss

View only
 
 
ABCDEFGHIJKLMNOPQRST
1
#DayDateTopicQuizzes/Due DatesLecture SlidesCommentComment #2Short Title
2
Data Mining (1st Half)
3
1MJan-13MG[INTRODUCTION]
http://archive.gersteinlab.org/mark/out/log/2014/01.13/talk/
4
2WJan-15JNGenomics I
http://archive.gersteinlab.org/proj/cbb752b14/Noonan_CBB_752b_Genomics_I_2014.pptx
5
3FJan-17JNGenomics II
http://archive.gersteinlab.org/proj/cbb752b14/Noonan_CBB_752b_Genomics_II_2014.pptx
6
MJan-20--(no class, MLK)
7
4WJan-22JRProteomics I
http://archive.gersteinlab.org/proj/cbb752b14/Proteins_I&II_Rinehart_spring2014.pdf
8
5MJan-27JRProteomics II
http://archive.gersteinlab.org/proj/cbb752b14/Structure_Rinehart_spring2014.pdf
9
6WJan-29MG[ALIGNMENT] (incl. multiple-seq. alignment)
http://archive.gersteinlab.org/mark/out/log/2014/01.27/course/
Got to just before HMMs in the class. Will resume in next class.
10
7MFeb-3MG[UNSUPERVISED MINING] (focusing on SVD)
http://archive.gersteinlab.org/mark/out/log/2014/02.02/class/
Contains 1 slide on Seq. Logos + Unsupervised Mining. Got up the slides on WGCNA in class. To resume from here in next class.Ordering of PCA/SVM methodology conclusion is a little off.
11
8WFeb-5MG[SUPERVISED MINING] (Trees & SVMs)
http://archive.gersteinlab.org/proj/cbb752b14/supervised_machine_learning
Stopped on slide 28 in class, before max. margin hyperplane. To resume next class.A an easy to understand writeup on SVM + movie is at http://bytesizebio.net/2014/02/05/support-vector-machines-explained-well/
12
MFeb-10--(no class)
13
9WFeb-12MGData Mining #3 / Processing Next-Gen sequencingQUIZ 1
http://archive.gersteinlab.org/proj/cbb752b14/NGS_analysis_Michael
Finished on 2/17; slides updated very slightly on 02/24 (cosmetic changes only; content identical)
14
10MFeb-17MGNext-Gen sequencing and Variants
http://archive.gersteinlab.org/proj/cbb752b14/Rare_variants_Cong
Got up to the beginning of Kernel Analysis (slide 16)
15
11WFeb-19MGAnalysis of [NETWORK TOPOLOGY]
http://archive.gersteinlab.org/mark/out/log/2014/02.22/class/
Got up to the beginning of Relationship of Essentiality with Centrality (slide 53) in Network Topology slide packLast year's slides: http://archive.gersteinlab.org/mark/out/log/2012/10.02/class/new-networks-slide-pack-updated-on-13oct/cbb752-mg-fall12-networks.ppt
16
12MFeb-24MGPractical Network & NGS Analysis [FUNSEQ APPLICATION]
http://archive.gersteinlab.org/mark/out/log/2014/02.23/class
Finished Topology & FunSeq slide packs. Started Network Prediction pack.
17
13WFeb-26MG[NETWORK PREDICTION]QUIZ 2Got up practically assessing Bayesian Integration (slide 53) in the Network Prediction slide pack
18
14MMar-3MGMisc.Homework 1 Due
http://archive.gersteinlab.org/mark/out/log/2012/10.02/class/cbb752-fall12--how-to-avoid-plagiarism_v9.pdf
Last year's plagarism "lecture" (may go over briefly in conjunction with final project)Finished network prediction pack, did poll & project & then went through plagarism pack quickly
19
15WMar-5KCSemantic Web/Biology
http://archive.gersteinlab.org/proj/cbb752b14/Semantic_Web_Cheung
20
MMar-10--(no class)
21
WMar-12--(no class)
22
MMar-17--(no class)
23
WMar-19--(no class)
24
Simulation (2nd Half)
25
16MMar-24SKCell/Immune Simulation I
http://archive.gersteinlab.org/proj/cbb752b14/Kleinstein.CBB752.S2014.Lecture_1.pdf
26
17WMar-26SKCell/Immune Simulation II
http://archive.gersteinlab.org/proj/cbb752b14/Kleinstein.CBB752.S2014.Lecture_2.pdf
27
18MMar-31SKCell/Immune Simulation III
http://archive.gersteinlab.org/proj/cbb752b14/Kleinstein.CBB752.S2014.Lecture_3.pdf
28
19WApr-2COProtein Simulation IQUIZ 3
http://archive.gersteinlab.org/proj/cbb752b14/protein_folding_1
O'Hern lecture 1
29
20MApr-7COProtein Simulation IIHomework 2 Due
http://archive.gersteinlab.org/proj/cbb752b14/protein_folding_2_2014.ppt
O'Hern lecture 2
30
21WApr-9COProtein Simulation III
http://archive.gersteinlab.org/proj/cbb752b14/protein_folding_3_2014.ppt
O'Hern lecture 3
31
22MApr-14COMarkov Models Ihttp://archive.gersteinlab.org/proj/cbb752b14/markov_models_ohern_1.ppt
32
23WApr-16COMarkov Models IIhttp://archive.gersteinlab.org/proj/cbb752b14/markov_models_ohern_2.ppt
33
24MApr-21COMarkov Models IIIHomework 3 Duehttp://archive.gersteinlab.org/proj/cbb752b14/markov_models_ohern_3.ppt
34
25WApr-23COProtein AggregationQUIZ 4
35
FApr-27FINAL PROJECT DUE
36
NO FINAL EXAM
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
Loading...