2015-11 MG Workshop Assemblies

	A	B	C	D	E	F	G	H	I	J	K	L	M	N	O	P	Q
1	Sample	kmer size	name	Contig cut-off length	sum	n	trim_n	min	med	mean	max	n50	n50_len	n90	n90_len	filename	Comment
2	Sample name	Length of kmer in nucleotides	Student name(s)	Length cut-off for contigs considered by assemstats	Total size of assembly	Total number of contigs	Number of contigs longer or equal to length cut-off	Length of shortest contig	Median length of contigs	Mean length of contigs	Max length of contigs	Number of contigs that contain 50% of bases in the assembly	Minimum length of contigs that together make up 50% of bases in the assembly	Number of contigs that contain 90% of bases in the assembly	Minimum length of contigs that together make up 90% of bases in the assembly	Path to file used in assemstats

3	gut	21	Per		30333864	263155	147786	100	157	205	2686	41052	213	119563	118	gut_21/contigs.fa
4		25	Dirk		31909005	219810	148368	100	157	215	3939	38229	228	118771	119	gut_25/contigs.fa
5		31	Ida	100	31702499	185466	146932	100	154	215	3942	36529	230	117302	118	gut_31/contigs.fa
6		50	Andrea	100	19169382	66941	65700	100	211	291	18978	17061	314	52895	160	gut_50/contigs.fa
7		39	Stefania, Maria	100	27421977	122806	111492	100	162	245	13023	25796	267	89190	132	gut_39/contigs.fa
8		41	Elin	100	26005437	110544	102544	100	169	253	8224	23926	276	82209	136	gut_41/contigs.fa
9		51	Edvin	100	17534740	58731	58731	101	222	298	23130	15818	318	47370	169	gut51/contigs.fa
10		61	Sandra, Margarita, Daniel	100	10582339	35230	35230	121	246	300	25671	11448	294	29465	195	gut61/contigs.fa
11		57	Christian	100	13466378	44738	44738	113	239	301	41597	13581	305	36909	185	gut_57/contigs.fa
12			Christian	150	13386971	44738	44087	150	241	303	41597	13451	306	36523	186	gut_57/contigs.fa
13		55	Nittaya	100	14851789	49444	49444	109	233	300	25671	14415	309	40467	180	gut_55/contigs.fa
14	skin	21	AnnaSz	100	7360365	96905	36249	100	148	203	3539	9187	201	29148	113	skin_21/contigs.fa
15		21	AnnaSz	200	3703146	96905	9301	200	292	398	3539	2505	424	7548	224	skin_21/contigs.fa
16		41	AnnaSz	100	6684141	28646	25031	100	162	267	6619	5009	316	19676	135	skin_41/contigs.fa
17		41	AnnaSz	200	4338945	28646	9037	200	340	480	6619	2139	546	7060	242	skin_41/contigs.fa
18		61	AnnaSz	100	3784716	9442	9442	121	244	400	7395	1636	487	7104	196	skin_61/contigs.fa
19	teeth	21	Marcela	100	30741174	325777	151915	100	156	202	7071	42010	205	122707	116	teeth_21/contigs.fa
20		31	Olga	100	33443596	219947	168582	100	151	198	8196	46056	201	136252	113	teeth_31/contigs.fa
21
22		45	Disa	1000	1642156	105969	1087	1000	1297	1510	5237	393	1440	928	1069	teeth_45/contigs.fa
23			Disa	500	105969	105969	6143	500	671	813	5237	2055	796	5197	538	teeth_45/contigs.fa
24		51	Anna	100	17464845	64281	64281	101	204	271	13019	17869	270	52414	163	teeth_51/contigts.fa
25		61	Erik	10, 50, 100	9505620	30325	30325	121	237	313	11825	8757	299	25064	194	teeth_61/contigs.fa	Cutoff >200 gives worse values
26		31	Conny	200	31702499	185466	146932	100	154	215	3942	36529	230	117302	118	gut_31/contigs.fa
27		21	Marcela	200	15837005	325777	44315	200	280	357	7071	13412	354	36746	220	teeth_21/contigs.fa
28		21	Marcela	500	4932123	325777	6202	500	670	795	7071	2131	778	5248	535	teeth_21/contigs.fa
29		21	Marcela	1000	1532367	325777	1064	1000	1277	1440	7071	403	1391	915	1058	teeth_21/contigs.fa
30		21	Marcela	2000	276812	325777	100	2002	2471	2768	7071	40	2647	87	2124	teeth_21/contigs.fa
31		41	Andrea	500	5200526	134537	6556	500	668	793	6732	2259	770	5550	536	teeth_41/contigs.fa
32		41	Andrea	250	12225210	134537	27525	250	354	444	6732	8496	445	22850	275	teeth_41/contigs.fa
33		19	Olena	100	28465912	381680	148662	100	153	191	3531	44062	191	121542	114	teeth_20/contigs.fa
34		37	Stefania	500	5490552	159904	6966	500	668	788	6728	2422	769	5905	537	teeth_37/contigs.fa
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