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Pre-BOSC 2023 CollaborationFest signup: Join OBF-BOSC Slack workspace via CoFest web page and subscribe #cofest channel
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July 22-23, 2023
Lyon (France) and online
More info:
https://www.open-bio.org/events/bosc-2023/obf-bosc-collaborationfest-2023/
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To help attendees find each other and organize into groups, please tell us about yourself and what topic(s) interest you.
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Shared document for project proposals: suggest projects HERE ->
CoFest 2023 goals
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Help us accomodate your needs, please let us know about your dietary requirements in column J
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First nameLast NameCompany / affiliation
Work country
GitHub username
Day 1, 2, or both?
Arrival date/time
In person or online?
Topics of interest
Dietary requirements (e.g. Vegetarian, Vegan)
Comments
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HervéMénagerInstitut PasteurFrancehmenagerboth9AM, day 1In personSoftware development, Best practices, Ontologies and standards, workflows
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MichaelHeuerMammoth Biosciences, Inc.USheuermhbothOnlineScaling workflows, Citizen/Participatory science
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ChrisFieldsUniversity of IllinoisUScjfieldsbothOnlineSoftware dev, workflows, standards
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RobertNicaUniversitat Politècnica de ValènciaSpainrobertbioTBDIn personworkflows, monitoring, cloud infrastructure,
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Thomas Schlapp Harvard Business USboth tbdMinimal coding. Mostly ideation, organization, and glue work
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ClémentBellotENS Lyon / INRAeFranceSeajullbothIn person
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AdamKlieUniversity of California, San DiegoUSadamklieDay 2In personMachine learning, software ecosystems, sequence-to-function prediction
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JimProcterU. Dundee, ScotlandUKforeveremainDay 1Day 1, 10amIn personProtein sequence and structure datavis, federating servicesveganUp for discussing broad topics as well as more detailed ones - Sustainability, Interoperability, Reuse & Synergy.
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PeterCockJames Hutton InstituteUKpeterjcTBDOnlineBiopython, e.g. migrating documentation from LaTeX to RST
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BhaveshPatelFAIR Data Innovations HubUSbvhpatellikely bothDay 1, 9amIn personFAIR data, FAIR research software, Standards, Best practicesvegan
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TazroOhtaChiba UniversityJapaninutanobothDay 1, 9amIn personExperimental metadata x LLMs / workflows
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StellaFragkouli
Institute of Applied Bioscience, Centre for Research for Technology Hellas (INAB|CERTH)
GreecesfragkoulDay 2-OnlineAI, software development, biophysical modelling, variant calling, benchmarking, synthetic data
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GiovannaAschettinoGarrahan Paediatric HospitalArgentinagaschettinoboth-OnlineWorkflows, Software ecosystems, cloud infrastructure, Best Practices
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GarciaFrancisco MartinGarrahan Paediatric HospitalArgentinagarciafranciscomartnboth-OnlineWorkflows, Software ecosystems, cloud infrastructure, Best Practices, Protein structure prediction
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JérémyJustENS Lyon / CNRSFrancejejustboth9am, day 1In person
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José MªFernándezBarcelona Supercomputing CenterSpainjmfernandezbothDay 1 (probably after lunch)In person
Technical and scientific metrics gathering, FAIR dataset fetching and publishing, best practices, standards, workflows
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RavinderAbrolCalifornia State University NorthridgeUSraviabrolDay 2Day 2, 9amIn personProtein structure analysis, biophysical simulations, CLI toolsVegetarianUp for collaborating and networking on open source tools
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QuentinCavallini-SpeisserENS Lyon / CNRSFranceQueCSboth9am, day 1In personBest practices, workflows, transcriptomics, AINone
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BertrandHuguenin-BizotENS Lyon / CNRSFranceboth9am, day 1In person
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LisannaPaladinEuropean Molecular Biology Laboratory (EMBL)Germanylisannawill not make it
sorry, because of travel and volunteer duties I cannot make it in either days, despite my registration
In person
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SidyFallCNRS France bothDay 1, 9 amIn personbest practices, single cellnot pork
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JiyaoWangNCBI/NLM/NIHUSjiywang3bothOnline3D visualizationNone
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ToddMorseChan Zuckerberg InitiativeUSmorsecodistDay 2Day 2, 9 amIn personWorfklows, cloud infrastructure, bonus Rust, locality sensitive hashing (sourmash)
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MarionDufeuCentre de Recherche en Cancérologie de Lyon (CRCL)FrancebothIn personSpatial analysis, spatial transcriptomics, single cell RNAseq
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NicolasMendiboureENS Lyon / CNRSFrancenmendibourebothIn personSystems biology, software development, biopython, workflows
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MatúšKalašUniversity of BergenNorwaymatuskalasbothDay 1, 9.45 amIn personOntologies, standards, findability, open linked data, citizen science, biodiversity & ecologyVegan
Up for getting input to EDAM ontology from domain experts (e.g. biodiversity, microbial & non-microbial ecology, ML, and everything else)
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MuhammadShahzaibNational University of Sciences & Technology, Islamabad,PakistanPakistanShahzaib20bothOnlineScRna,Transcriptomics,Metagenomics,Cloud Computing, Data Analysis
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Amman SafeerNational University of Sciences & Technology, Islamabad,PakistanPakistanBioCoder007bothOnlineProtein Sequence Design and Language Modeling, Antibody Design, Cloud-Computing, LLMs, NGS Analysis
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AdeelNisarNational University of Sciences & Technology, Islamabad,PakistanPakistanbothOnlineNLP based Protein Design, Deep Learning, NGS Analysis
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NúriaQueralt RosinachLeiden University Medical CenterNetherlandsNuriaQueraltbothDay 1, 10amIn personOntologies, AI, multimodal data integration, federated learning, linked data, semantic webnone
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EmmanuelAdamolekunHelix Biogen InstituteNigeriaEmma-194-AdaBothOnline
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DeveshHasejaUniversity of BirminghamUKdh-bioinfoBothOnlineProgramming, visualization, software dev, workflows
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TarcisioMendes de FariasSIB Swiss Institute of BioinformaticsSwtizerlandtarcisiotmfDay 2Day 2, 9amIn person
AI, knowledge representation, semantic web, data integration and interoperability, question answering systems (including LLMs)
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JulieMcMurryUniversity of Colorado, Anschutz Medical CampusUSAjmcmurryBothDay 2, 9amIn personSoftware development, Best practices, Ontologies and standards, workflows, Data visualizationNone
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Marina ElviraMargosUniversity of Claude Bernard Lyon 1 FranceBothDay 1, 9am In personProteomics, Transcirptomics, AI, Protein structure analysisNone
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HirotakaSuetakeSator, Inc.JapansuecharoDay 1Day 1, 9amIn personWorkflows, Software devNone
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Renskede Wit
Vrije Universiteit Amsterdam / Netherlands Cancer Institute / Utrecht University
NetherlandsRenskeWDay 2Day 2, 9amIn personCWL, workflows, RO-Crate, ontologies and standards, provenance, cancer genomics, semantic webNone
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MichelleAudiracHarvard UniversityUSaudiracmichelleDay 2Day 2, 9amIn personcontainer based workflows, OLAP, semantic layers, provenance, reproducibility and FAIR datasetsNone
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PriyankaSuranaWellcome Sanger InstituteUKpriyanka-suranabothOnlineworkflows, data provenance, standardisation, optimisation
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VartikaBishtUtrecht University ( Annogen B.V. )NLVartikaBisht6197bothDay 1, 9amIn Personcontainer based workflow, optimisations, NLP in heath data science, Kowledge graphs, Fuzzy learningVegetarian
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NOTE that those who sign up after this point are welcome to come work with us, but there may not be a free lunch allocated for you!
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JustinReeseBerkeley LabUSjustaddcoffeeunsureunsureIn personMachine learning, knowledge graphs, biomedical problemsNone
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Michael CrusoeELIXIR-DE / Common Workflow LanguageDEmr-cbothDay 1, 9amIn personWorkflows, standards, ro-cratevegan
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SoufyanLakbir
Vrije Universiteit Amsterdam / Netherlands Cancer Institute / Utrecht University
NLnayfousDay 2Day 2, 9am In personML, statistics, transcriptomics, genomics, cancerVegetarian
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JasserGheribiUniversity of Claude Bernard Lyon 1 FranceTawahinBeirutbothDay 1, 9amIn personSoftware Developement, best pratices,workflow, CybersecurityVegetarian
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