ABCDEFGHIJKLMNOPQRSTUVWXYZAAABACADAEAFAGAHAIAJ
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THIS SPREADSHEET AS BEEN DEPRECATED.
THE CURRENT SOURCE OF TRUTH FOR INFORES IDENTIFIERS AND METADATA IS THE TSV IN THE BIOLINK REPO HERE:
https://github.com/biolink/information-resource-registry/blob/main/infores_catalog.yaml
ANY EDITS OR ADDITIONS TO THE CATALOG SHOULD BE MADE AS PULL REQUESTS TO THIS FILE.
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StatusQuesions Question for . . . AnswersProvenance Categorynameidiriurlsynonymtranslator categoryhas contributorregistered_bydescriptionsource(s)categorydata access urltranslator registry urlContactKL/AT TagKL/AT Notes / Questionsoriginal order
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releasedAggregate Analysis of ClinicalTrial.gov (AACT) databaseinfores:aacthttps://w3id.org/infores/aact-ctti-clinical-trialshttps://aact.ctti-clinicaltrials.org/AACTKPhttps://ctti-clinicaltrials.org/our-work/quality/state-of-clinical-trials/ Researchers can use CTTI’s Aggregate Analysis of ClinicalTrial.gov (AACT) database to easily access and analyze data from the ClinicalTrials.gov registry to evaluate studies and characterize the current state of clinical trials.   Information ResourceCurated96
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releasedAlliance of Genome Resources (AGR Knowledgebase)infores:agrkbhttps://www.alliancegenome.org/downloadshttps://www.alliancegenome.org/Curated
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releasedDo we represent the UMLS representation of these terminologies specifically here (e.g. 'atc-codes-umls'), or more generically (e.g. just 'atc-codes')SRIAnatomical Therapeutic Chemical (ATC) Codes (from UMLS)infores:atc-codes-umlshttps://w3id.org/infores/atc-codes-umlshttps://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/ATC/index.htmlKPInformation ResourceCurated306
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releasedClinical Data Services ProviderCOHD uses Athena to retrieve OMOP concept definitions (e.g., name, domain)Athenainfores:athenahttps://w3id.org/infores/athenahttps://athena.ohdsi.org/search-terms/startKPInformation Resourcehttps://athena.ohdsi.org/api/Curated228
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releasedRanking AgentCB: Separate APIs stood up for serving TRAPI 1.0 and TRAPi 1.1 compliant data created by the same version of the the Automat tool. This is why the TRAPI version is baked into the API name. To avoid resource names that look like they have six digits in their version (e.g. 'automat-biolink-trapi-1-1-0.1.0.0'), we will collapse the trapi version part of the resource name from 'trapi-1-1-0' to 'trapi11'. It's ugly, but the best we can think to do right now.Automat Biolinkinfores:automat-biolinkhttps://w3id.org/infores/automat-biolinkhttp://smart-api.info/registry?q=05a5f5d18b4f2c532367561778571c9aKP['Ranking Agent']A graph based on the [Monarch API (https://api.monarchinitiative.org/)](https://api.monarchinitiative.org/).infores:biolinkInformation Resource[{'description': 'Default server', 'url': 'https://automat.renci.org/biolink/1.1'}]http://smart-api.info/registry?q=05a5f5d18b4f2c532367561778571c9aCurated5
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releasedAutomat Chembioinfores:automat-chembiohttps://w3id.org/infores/automat-chembiohttp://smart-api.info/registry?q=76cd06cca954663972cffd4f74b179bdKP['Ranking Agent']A graph based on [chem2bio2rdf (http://cheminfov.informatics.indiana.edu:8080/c2b2r/)](http://cheminfov.informatics.indiana.edu:8080/c2b2r/).infores:chem2bio2rdfInformation Resource[{'description': 'Default server', 'url': 'https://automat.renci.org/chembio/1.1'}]http://smart-api.info/registry?q=76cd06cca954663972cffd4f74b179bdCurated6
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releasedAutomat Chemical normalization (trapi v-1.1.0)infores:automat-chem-normhttps://w3id.org/infores/automat-chem-normhttp://smart-api.info/registry?q=b0b36734630fdeb93252ebab7939535eKP['Ranking Agent']A graph linking together similar compounds. Two compounds are linked by an edge in the graph if they are equivalent when charge, salts, and stereochemistry are ignored.Information Resource[{'description': 'Default server', 'url': 'https://automat.renci.org/chemical-normalization'}]http://smart-api.info/registry?q=b0b36734630fdeb93252ebab7939535eCurated7
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releasedAutomat Covid Phenotypes (trapi v-1.1.0)infores:automat-covid-phenotypeshttps://w3id.org/infores/automat-covid-phenotypeshttp://smart-api.info/registry?q=4208a6c85c109f7e770219d3234d12a2KP['Ranking Agent']A hand-curated graph of phenotypes of covid-19.infores:cord19Information Resource[{'description': 'Default server', 'url': 'https://automat.renci.org/covid-phenotypes/1.1'}]http://smart-api.info/registry?q=4208a6c85c109f7e770219d3234d12a2Curated10
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releasedRanking AgentCB: this is covid phenotypes plus other sourcesAutomat Covidkop KG (trapi v-1.1.0)infores:automat-covidkophttps://w3id.org/infores/automat-covidkophttp://smart-api.info/registry?q=a192b537c4113cc585088511574dbe64KP['Ranking Agent']Knowledge graph constructed from Robokop KG by incorporating Cord-19 dataset and other covid related knowledge sources.Information Resource[{'description': 'Default server', 'url': 'https://automat.renci.org/covidkopkg/1.1'}]http://smart-api.info/registry?q=a192b537c4113cc585088511574dbe64CuratedConfirm with owners11
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releasedAutomat CTD (trapi v-1.1.0)infores:automat-ctdhttps://w3id.org/infores/automat-ctdhttp://smart-api.info/registry?q=bd612e18f86d9097b02c0d83344b46b7KP['Ranking Agent']A graph based on the [Comparative Toxicogenomics Database (ctdbase.org)](ctdbase.org).infores:ctdInformation Resource[{'description': 'Default server', 'url': 'https://automat.renci.org/ctd/1.1'}]http://smart-api.info/registry?q=bd612e18f86d9097b02c0d83344b46b7Curated12
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releasedAutomat DrugCentralinfores:automat-drug-centralhttps://w3id.org/infores/automat-drug-centralhttps://smart-api.info/registry?q=539873b1f2f2eb913efaee411e09eaa7KP['Ranking Agent']A graph based on DrugCentralinfores:drug-centralInformation ResourceCurated
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releasedAutomat Foodb (trapi v-1.1.0)infores:automat-foodbhttps://w3id.org/infores/automat-foodbhttp://smart-api.info/registry?q=1fd2f4cc6b3b6b1f7cda594b00607270KP['Ranking Agent']A graph of the food/chemical relationships in [foodb.ca](foodb.ca).infores:foodbInformation Resource[{'description': 'Default server', 'url': 'https://automat.renci.org/foodb/1.1'}]http://smart-api.info/registry?q=1fd2f4cc6b3b6b1f7cda594b00607270Curated13
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releasedAutomat Gtopdb (trapi v-1.1.0)infores:automat-gtopdbhttps://w3id.org/infores/automat-gtopdbhttp://smart-api.info/registry?q=c8b1619535bd598406049f4dc51e1702KP['Ranking Agent']A graph based on the [IUPHAR Guide to Pharmacology (https://www.guidetopharmacology.org/)](https://www.guidetopharmacology.org/)infores:gtopdbInformation Resource[{'description': 'Default server', 'url': 'https://automat.renci.org/gtopdb/1.1'}]http://smart-api.info/registry?q=c8b1619535bd598406049f4dc51e1702Curated15
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releasedAutomat Hetio (trapi v-1.1.0)infores:automat-hetiohttps://w3id.org/infores/automat-hetiohttp://smart-api.info/registry?q=3a8ad755bbd6f4fdfc0a18c8020d6d58KP['Ranking Agent']A graph based on [hetionet (het.io)](het.io).infores:hetioInformation Resource[{'description': 'Default server', 'url': 'https://automat.renci.org/hetio/1.1'}]http://smart-api.info/registry?q=3a8ad755bbd6f4fdfc0a18c8020d6d58Curated16
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releasedAutomat HGNC (trapi v-1.1.0)infores:automat-hgnchttps://w3id.org/infores/automat-hgnchttp://smart-api.info/registry?q=255ea57924924b721919b9ee17a07894KP['Ranking Agent']Gene families from [HGNC (genenames.org)](genenames.org).infores:hgncInformation Resource[{'description': 'Default server', 'url': 'https://automat.renci.org/hgnc/1.1'}]http://smart-api.info/registry?q=255ea57924924b721919b9ee17a07894Curated17
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releasedAutomat HMDB (trapi v-1.1.0)infores:automat-hmdbhttps://w3id.org/infores/automat-hmdbhttp://smart-api.info/registry?q=c3e55e3a28cf14e147b55e6e09b32b9bKP['Ranking Agent']A graph based on the [Human Metabolome DataBase (hmdb.org)](hmdb.org).infores:hmdbInformation Resource[{'description': 'Default server', 'url': 'https://automat.renci.org/hmdb/1.1'}]http://smart-api.info/registry?q=c3e55e3a28cf14e147b55e6e09b32b9bCurated18
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releasedAutomat Human GOA (trapi v-1.1.0)infores:automat-human-goahttps://w3id.org/infores/automat-human-goahttp://smart-api.info/registry?q=2c9fff2f09c71302659faeb515bbb2b8KP['Ranking Agent']Human Gene Ontology Annotations from the GO consortium.infores:goaInformation Resource[{'description': 'Default server', 'url': 'https://automat.renci.org/human-goa/1.1'}]http://smart-api.info/registry?q=2c9fff2f09c71302659faeb515bbb2b8Curated19
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releasedAutomat IntAct (trapi v-1.1.0)infores:automat-intacthttps://w3id.org/infores/automat-intacthttp://smart-api.info/registry?q=bee0cc86f86d88b83f613b674e2bd92eKP['Ranking Agent']Molecular (Gene-Gene) interactions from [EBI IntAct (https://www.ebi.ac.uk/intact/)](https://www.ebi.ac.uk/intact/).infores:intactInformation Resource[{'description': 'Default server', 'url': 'https://automat.renci.org/intact/1.1'}]http://smart-api.info/registry?q=bee0cc86f86d88b83f613b674e2bd92eCurated20
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releasedAutomat KEGG (trapi v-1.1.0)infores:automat-kegghttps://w3id.org/infores/automat-kegghttp://smart-api.info/registry?q=305a2909830b776df7a02b7207e4acc5KP['Ranking Agent']A graph based on the [Kyoto Encyclopedia of Genes and Genomes (https://www.genome.jp/kegg/)](https://www.genome.jp/kegg/).infores:keggInformation Resource[{'description': 'Default server', 'url': 'https://automat.renci.org/kegg/1.1'}]http://smart-api.info/registry?q=305a2909830b776df7a02b7207e4acc5Curated21
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releasedAutomat MyChem (trapi v-1.1.0)infores:automat-mychem-infohttps://w3id.org/infores/automat-mychem-infohttp://smart-api.info/registry?q=9497b5a8f4f07f504599a72692d14083KP['Ranking Agent']A graph integrating DrugBank, DrugCentral, and Aeolus data as provided by [mychem.info](mychem.info).infores:mychem-infoInformation Resource[{'description': 'Default server', 'url': 'https://automat.renci.org/mychem/1.1'}]http://smart-api.info/registry?q=9497b5a8f4f07f504599a72692d14083Curated22
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releasedAutomat Ontological Hierarchy (trapi v-1.1.0)infores:automat-ontology-hierarchyhttps://w3id.org/infores/automat-ontology-hierarchyhttp://smart-api.info/registry?q=2bb65b7ea0cd1d40f4e9147836b750e2KP['Ranking Agent']A graph for ontological hierarchy extracted from Uberongraph.Information Resource[{'description': 'Default server', 'url': 'https://automat.renci.org/ontological-hierarchy/1.1'}]http://smart-api.info/registry?q=2bb65b7ea0cd1d40f4e9147836b750e2Curated23
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releasedAutomat Panther (trapi v-1.1.0)infores:automat-pantherhttps://w3id.org/infores/automat-pantherhttp://smart-api.info/registry?q=540a176f25d912a1c2a066ee2e2428fcKP['Ranking Agent']A graph of gene families and pathways from [Panther (pantherdb.org)](pantherdb.org)infores:pantherInformation Resource[{'description': 'Default server', 'url': 'https://automat.renci.org/panther/1.1'}]http://smart-api.info/registry?q=540a176f25d912a1c2a066ee2e2428fcCurated24
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releasedAutomat Pharos (trapi v-1.1.0)infores:automat-pharoshttps://w3id.org/infores/automat-pharoshttp://smart-api.info/registry?q=e0031784afd7cb4e97e266d11df3a9e4KP['Ranking Agent']A graph based on [Pharos (pharos.nih.gov)](pharos.nih.gov).infores:phaorsInformation Resource[{'description': 'Default server', 'url': 'https://automat.renci.org/pharos/1.1'}]http://smart-api.info/registry?q=e0031784afd7cb4e97e266d11df3a9e4Curated25
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releasedWhat is this?Ranking AgentCB: this is is a union of many of the automatsAutomat Robokop KG (trapi v-1.1.0)infores:automat-robokophttps://w3id.org/infores/automat-robokophttp://smart-api.info/registry?q=4f94c54ada189ecfe08491f662986fd6KP['Ranking Agent']Biomedical Knowledge graph build by constructing relationships from federated data sets.robokopInformation Resource[{'description': 'Default server', 'url': 'https://automat.renci.org/robokopkg/1.1'}]http://smart-api.info/registry?q=4f94c54ada189ecfe08491f662986fd6CuratedBut Robokop will likely not ever be the primary source - as they will report where they got the edge from. 26
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releasedAutomat Uberongraph (trapi v-1.1.0)infores:automat-uberongraphhttps://w3id.org/infores/automat-uberongraphhttp://smart-api.info/registry?q=994a667dafe2e2c1d42a5390a6fba9aaKP['Ranking Agent']A graph representation of Uberongraph, an integration of ontologies including GO, CHEBI, Uberon, and HPO.Information Resource[{'description': 'Default server', 'url': 'https://automat.renci.org/uberongraph/1.1'}]http://smart-api.info/registry?q=994a667dafe2e2c1d42a5390a6fba9aaCurated28
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releasedAutomat Viral Proteome (trapi v-1.1.0)infores:automat-viral-protomehttps://w3id.org/infores/automat-viral-protomehttp://smart-api.info/registry?q=3437ede0d451c90f67097c56b230e022KP['Ranking Agent']A graph consisting of viral proteins from UniProt, connected by similarity edges from UniRef.infores:uniref, infores:goaInformation Resource[{'description': 'Default server', 'url': 'https://automat.renci.org/viral-proteome/1.1'}]http://smart-api.info/registry?q=3437ede0d451c90f67097c56b230e022Curated29
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releasedBasic Formal Ontologyinfores:bfohttps://w3id.org/infores/bfohttp://www.obofoundry.org/ontology/bfo.htmlBFOKPInformation ResourceCurated98
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releasedBgeeinfores:bgeehttps://w3id.org/infores/bgeehttps://bgee.org/KPInformation ResourceCurated99
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releasedBiGG Modelsinfores:bigg-modelshttps://w3id.org/infores/bigg-modelshttp://bigg.ucsd.edu/KPa knowledgebase of genome-scale metabolic network reconstructionsInformation ResourceCurated102
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releasedBindingDBinfores:bindingdbhttps://www.bindingdb.orgThe Binding DatabaseBindingDB is a public, web-accessible database of measured binding affinities, focusing chiefly on the interactions of protein considered to be drug-targets with small, drug-like molecules. As of July 31, 2021, BindingDB contains 41,300 Entries, each with a DOI, containing 2,303,972 binding data for 8,561 protein targets and 995,797 small molecules. Information Resourcehttps://www.bindingdb.org/bind/chemsearch/marvin/SDFdownload.jsp?all_download=yesCurated
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releasedBio2RDFinfores:bio2rdfhttps://w3id.org/infores/bio2rdfhttp://bio2rdf.orgKPInformation ResourceCurated103
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releasedBioCatalogueinfores:biocataloguehttps://w3id.org/infores/biocataloguehttps://www.biocatalogue.org/servicesKPInformation ResourceCurated104
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releasedBioLink APIinfores:biolink-apihttps://w3id.org/infores/biolink-apihttps://api.monarchinitiative.org/api/KP['Standards Reference Implementation Team', 'Service Provider']API integration layer for linked biological objects.Information Resource[{'description': 'Production server', 'url': 'https://api.monarchinitiative.org/api'}]http://smart-api.info/registry?q=d22b657426375a5295e7da8a303b9893Curated31
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releasedBiolink ontologyinfores:biolink-ontologyhttps://w3id.org/infores/biolink-ontologyhttps://github.com/biolink/biolink-model/blob/master/biolink-model.owl.ttlKPInformation ResourceCurated324
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releasedBiological Spatial Ontology infores:bspohttps://w3id.org/infores/bspohttps://obofoundry.org/ontology/bspo.htmlBSPOKPInformation Resource[{'description': 'Encrypted Production server', 'url': 'https://biothings.ncats.io/bioplanet_pathway_gene'}, {'description': 'Production server', 'url': 'http://biothings.ncats.io/bioplanet_pathway_gene'}]Curated108
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releasedBioPlanetinfores:bioplanethttps://ncats.nih.gov/pubs/features/bioplanethttps://tripod.nih.gov/bioplanet/#Information ResourceCurated
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releasedBioThings BindingDB APIinfores:biothings-bindingdbhttp://smart-api.info/registry?q=38e9e5169a72aee3659c9ddba956790dKP['Service Provider']Documentation of the BioThings [BindingDB](https://www.bindingdb.org/rwd/bind/index.jsp) query web services.infores:bindingdb[{'description': 'Encrypted Production server', 'url': 'https://biothings.ncats.io/bindingdb'}, {'description': 'Production server', 'url': 'http://biothings.ncats.io/bindingdb'}]http://smart-api.info/registry?q=38e9e5169a72aee3659c9ddba956790dCurated
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releasedBioThings BioPlanet Pathway-Disease APIinfores:biothings-bioplanet-pathway-diseasehttp://smart-api.info/registry?q=55a223c6c6e0291dbd05f2faf27d16f4KP['Service Provider']Documentation of the BioThings [BioPlanet](https://tripod.nih.gov/bioplanet/#) pathway-disease association query web services.infores:bioplanet[{'description': 'Encrypted Production server', 'url': 'https://biothings.ncats.io/bioplanet_pathway_disease'}, {'description': 'Production server', 'url': 'http://biothings.ncats.io/bioplanet_pathway_disease'}]http://smart-api.info/registry?q=55a223c6c6e0291dbd05f2faf27d16f4Curated
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releasedBioThings BioPlanet Pathway-Gene APIinfores:biothings-bioplanet-pathway-
gene		http://smart-api.info/registry?q=b99c6dd64abcefe87dcd0a51c249ee6dKP['Service Provider']Documentation of the BioThings [BioPlanet](https://tripod.nih.gov/bioplanet/#) pathway-gene association query web services.infores:bioplanet[{'description': 'Encrypted Production server', 'url': 'https://biothings.ncats.io/bioplanet_pathway_gene'}, {'description': 'Production server', 'url': 'http://biothings.ncats.io/bioplanet_pathway_gene'}]http://smart-api.info/registry?q=b99c6dd64abcefe87dcd0a51c249ee6dCurated
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draftBioThings DDInter APIinfores:biothings-ddinterhttps://smart-api.info/registry?q=00fb85fc776279163199e6c50f6ddfc6KP['Service Provider']Documentation of the BioThings API for [DDInter](http://ddinter.scbdd.com/) data.infores:ddinter[{'description': 'Encrypted Production server', 'url': 'https://biothings.ncats.io/ddinter'}, {'description': 'Production server', 'url': 'http://biothings.ncats.io/ddinter'}]https://smart-api.info/registry?q=00fb85fc776279163199e6c50f6ddfc6Curated
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releasedBioThings DGIdb APIinfores:biothings-dgidbhttps://w3id.org/infores/biothings-dgidbhttps://smart-api.info/ui/e3edd325c76f2992a111b43a907a4870KP['Service Provider']Documentation of the BioThings DGIdb query web services.infores:dgidbInformation Resource[{'description': 'Encrypted Production server', 'url': 'https://biothings.ncats.io/dgidb'}, {'description': 'Production server', 'url': 'http://biothings.ncats.io/dgidb'}]http://smart-api.info/registry?q=e3edd325c76f2992a111b43a907a4870Curated33
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releasedThis is a biothings generated biolink compliant api - so it gets its own infores separate from the parent DISEASES resource - correct?
Prefixed with biothings, to distinguish from parent resoruce 'Diseses')		SRIyesBioThings DISEASES APIinfores:biothings-diseaseshttps://w3id.org/infores/biothings-diseaseshttps://smart-api.info/registry?q=a7f784626a426d054885a5f33f17d3f8KP['Service Provider']Documentation of the DISEASES query web services.infores:diseasesInformation Resource[{'description': 'Encrypted Production server', 'url': 'https://biothings.ncats.io/DISEASES'}, {'description': 'Production server', 'url': 'http://biothings.ncats.io/DISEASES'}]http://smart-api.info/registry?q=a7f784626a426d054885a5f33f17d3f8Curated41
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releasedUnlike EBI Proteins API, this API has an ncats.io server - this means it was created with BT toolkit, correct? SRIyesBioThings EBIgene2phenotype APIinfores:biothings-ebi-gene2phenotypehttps://w3id.org/infores/biothings-ebi-gene2phenotypehttps://smart-api.info/registry?q=1f47552dabd67351d4c625adb0a10d00KP['Service Provider']Documentation of the EBIgene2phenotype query web services.infores:ebi-gene2phenotypeInformation Resource[{'description': 'Encrypted Production server', 'url': 'https://biothings.ncats.io/ebigene2phenotype'}, {'description': 'Production server', 'url': 'http://biothings.ncats.io/ebigene2phenotype'}]http://smart-api.info/registry?q=1f47552dabd67351d4c625adb0a10d00Curated44
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releasedIs this the same thing as BioThings Explorer ReasonerStdAPI in the internal Translator Resource spreadsheet? I suspect not. The resource here pre-dated Translator, lives at a different url, and does not return TRAPI-compliant data, right?. So I think we would want to have a separate Inforres id for it, in the External Resources file here. This is how I have done things for now. Extenral resource = 'biothings-explorer', and Translator resource = 'biothings-explorer-trapi'? or maybe 'translator-biothings-exporer'? or 'ncats-biothings-explorer'?Exploring agent
BioThings Explorerinfores:biothings-explorerhttps://w3id.org/infores/biothings-explorerhttp://biothings.io/explorer/BTEKP['Exploring Agent']Information ResourceCuratedBut BTE will likely not ever be the primary source - as they will report where they got the edge from. 107
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releasedBioThings Gene Ontology Biological Process APIinfores:biothings-go-bphttps://w3id.org/infores/biothings-go-bphttp://smart-api.info/registry?q=cc857d5b7c8b7609b5bbb38ff990bfffKP['Service Provider']Documentation of the Gene Ontology Biological Process query web services.infores:goInformation Resource[{'description': 'Encrypted Production server', 'url': 'https://biothings.ncats.io/go_bp'}, {'description': 'Production server', 'url': 'http://biothings.ncats.io/go_bp'}]http://smart-api.info/registry?q=cc857d5b7c8b7609b5bbb38ff990bfffCurated47
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releasedBioThings Gene Ontology Cellular Component APIinfores:biothings-go-cchttps://w3id.org/infores/biothings-go-cchttp://smart-api.info/registry?q=f339b28426e7bf72028f60feefcd7465KP['Service Provider']Documentation of the Gene Ontology Cellular Component query web services.infores:goInformation Resource[{'description': 'Encrypted Production server', 'url': 'https://biothings.ncats.io/go_cc'}, {'description': 'Production server', 'url': 'http://biothings.ncats.io/go_cc'}]http://smart-api.info/registry?q=f339b28426e7bf72028f60feefcd7465Curated48
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releasedBioThings Gene Ontology Molecular Activity APIinfores:biothings-go-mfhttps://w3id.org/infores/biothings-go-mfhttp://smart-api.info/registry?q=34bad236d77bea0a0ee6c6cba5be54a6KP['Service Provider']Documentation of the Gene Ontology Molecular Activity query web services.infores:goInformation Resource[{'description': 'Encrypted Production server', 'url': 'https://biothings.ncats.io/go_mf'}, {'description': 'Production server', 'url': 'http://biothings.ncats.io/go_mf'}]http://smart-api.info/registry?q=34bad236d77bea0a0ee6c6cba5be54a6Curated49
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draftBioThings GTRx APIinfores:biothings-gtrxhttps://smart-api.info/registry?q=316eab811fd9ef1097df98bcaa9f7361KP['Service Provider']Documentation of the BioThings API for [GTRx](https://gtrx.rbsapp.net/about.html) data.infores:gtrx[{'description': 'Encrypted Production server', 'url': 'https://biothings.ncats.io/gtrx'}, {'description': 'Production server', 'url': 'http://biothings.ncats.io/gtrx'}]https://smart-api.info/registry?q=316eab811fd9ef1097df98bcaa9f7361Curated
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releasedLooks like this just serves the ontology, not annotationsBioThings Human Phenotype Ontology APIinfores:biothings-hpohttps://w3id.org/infores/biothings-hpohttp://smart-api.info/registry?q=a5b0ec6bfde5008984d4b6cde402d61fKP['Service Provider']Documentation of the HPO query web services.infores:hpoInformation Resource[{'description': 'Encrypted Production server', 'url': 'https://biothings.ncats.io/hpo'}, {'description': 'Production server', 'url': 'http://biothings.ncats.io/hpo'}]http://smart-api.info/registry?q=a5b0ec6bfde5008984d4b6cde402d61fCurated51
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releasedBioThings iDISK APIinfores:biothings-idiskhttps://smart-api.info/registry?q=32f36164fabed5d3abe6c2fd899c9418KPService Providerinfores:idiskInformation ResourceCuratedWhat is this?327
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releasedBioThings MGIgene2phenotype APIinfores:biothings-mgi-g2phttps://w3id.org/infores/biothings-mgi-g2phttp://smart-api.info/registry?q=77ed27f111262d0289ed4f4071faa619KP['Service Provider']Documentation of the MGIgene2phenotype query web services.infores:mgiInformation Resource[{'description': 'Encrypted Production server', 'url': 'https://biothings.ncats.io/mgigene2phenotype'}, {'description': 'Production server', 'url': 'http://biothings.ncats.io/mgigene2phenotype'}]http://smart-api.info/registry?q=77ed27f111262d0289ed4f4071faa619Curated58
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releasedBioThings Rhea APIinfores:biothings-rheahttp://smart-api.info/registry?q=03283cc2b21c077be6794e1704b1d230KP['Service Provider']Documentation of the BioThings Rhea query web services.infores:rheaInformation Resourcehttp://smart-api.info/registry?q=03283cc2b21c077be6794e1704b1d230Curated
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releasedBioThings UBERON Ontology APIinfores:biothings-uberon-ontologyhttps://w3id.org/infores/biothings-uberon-ontologyhttp://smart-api.info/registry?q=ec6d76016ef40f284359d17fbf78df20KP['Service Provider']Documentation of the UBERON query web services.infores:uberonInformation Resource[{'description': 'Encrypted Production server', 'url': 'https://biothings.ncats.io/uberon'}, {'description': 'Production server', 'url': 'http://biothings.ncats.io/uberon'}]http://smart-api.info/registry?q=ec6d76016ef40f284359d17fbf78df20Curated95
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releasedCAM-KP APIinfores:cam-kphttps://w3id.org/infores/cam-kphttp://smart-api.info/registry?q=230691056df158545fd38bb73379d9c3Causal Activity Model KPKP['Exposures Provider']TRAPI interface to database of Causal Activity ModelsInformation Resource[{'url': 'https://stars-app.renci.org/cam-kp'}]http://smart-api.info/registry?q=230691056df158545fd38bb73379d9c3CuratedDoes this Resource also make and provide predictions?35
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releasedCatalog of Somatic Mutations in Cancerinfores:cosmichttps://w3id.org/infores/cosmichttps://cancer.sanger.ac.uk/cosmicCOSMICKPInformation ResourceCurated125
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releasedI chose the name 'cl' keeping with convention of naming OBO ontologies after their official appreviations / prefixes. But if 'cl' is too ambiguous, we can always write out as cell-ontology.SRICell Ontologyinfores:clhttps://w3id.org/infores/clhttps://obofoundry.org/ontology/cl.htmlCLKPInformation ResourceCurated117
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releasedChem2bio2RDFinfores:chem2bio2rdfhttps://w3id.org/infores/chem2bio2rdfhttp://cheminfov.informatics.indiana.edu:8080/c2b2r/KPInformation ResourceCurated111
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releasedChemBankinfores:chembankhttps://w3id.org/infores/chembankhttps://data.broadinstitute.org/chembank/KPInitiative for Chemical Genetics contract from the National Cancer InstituteInformation ResourceCurated112
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releasedChemBioinfores:chembiohttps://w3id.org/infores/chembioKPInformation ResourceCurated113
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releasedChEMBLinfores:chemblhttps://w3id.org/infores/chemblhttps://www.ebi.ac.uk/chembl/KPa manually curated database of bioactive molecules with drug-like properties.Information ResourceCurated114
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releasedChemical Entity of Biological Interestinfores:chebihttps://w3id.org/infores/chebihttps://www.ebi.ac.uk/chebi/ChEBIKPa freely available dictionary of molecular entities focused on ‘small’ chemical compoundsInformation ResourceCurated110
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releasedClinical Genome Resource (ClinGen) infores:clingenhttps://w3id.org/infores/clingenhttps://clinicalgenome.org/KPClinGen is a NIH-funded resource dedicated to building a central resource that defines the clinical relevance of genes and variants for use in precision medicine and researchInformation ResourceCurated120
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releasedClinical Profilesinfores:clinical-profileshttps://w3id.org/infores/clinical-profileshttps://model.clinicalprofiles.org/clinicalprofile.htmlKPInformation ResourceCurated118
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releasedClinicalTrials.govinfores:clinicaltrialshttps://w3id.org/infores/clinicaltrialshttps://clinicaltrials.govKPInformation ResourceCurated119
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releasedClinital Interpretation of Variants in Cancerinfores:civichttps://w3id.org/infores/civichttps://civicdb.org/homeCIViCKPInformation ResourceCurated116
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releasedClinVarinfores:clinvarhttps://w3id.org/infores/clinvarhttps://www.ncbi.nlm.nih.gov/clinvar/KPClinVar is a freely accessible, public archive of reports of the relationships among human variations and phenotypes, with supporting evidence.Information ResourceCurated120
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releasedComparative Toxicogenomics Databaseinfores:ctdhttps://w3id.org/infores/ctdhttp://ctdbase.orgCTDbaseKPa robust, publicly available database that aims to advance understanding about how environmental exposures affect human healthInformation ResourceCurated128
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releasedConfirm if this is specifically the human subset, and change name accordingly if so? Or can we just identify the larger resource (that covers other species besides human)Service Provider, SRISM: in SRI internal - leavign this generic is agreeableConsensusPathDBinfores:cpdbhttps://w3id.org/infores/cpdbhttp://cpdb.molgen.mpg.de/CPDBKPInformation ResourceCurated127
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deprecatedCovid Phenotypesinfores:covid-phenotypeshttps://w3id.org/infores/covid-phenotypesKPInformation ResourceCurated126
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releasedDDinterinfores:ddinterddinter.scbdd.comKPDDInter is a comprehensive, professional, and open-access database specific to drug-drug interactions. It provides abundant annotations for each DDI association including mechanism description, risk levels, management strategies, alternative medications, etc. to improve clinical decision-making and patient safety.
Information ResourceCurated331
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releasedDictyostelium discoideum anatomyinfores:ddahttps://w3id.org/infores/ddahttp://www.obofoundry.org/ontology/ddanat.htmlDDAKPInformation ResourceCurated132
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releasedDisease Ontologyinfores:disease-ontologyhttps://w3id.org/infores/disease-ontologyhttp://www.disease-ontology.org/DOKPInformation ResourceCurated136
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releasedDisease-gene associations mined from literatureinfores:diseaseshttps://w3id.org/infores/diseaseshttps://diseases.jensenlab.org/KPInformation ResourceCurated137
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releasedDiseases & Traits in LD databaseinfores:distildhttps://w3id.org/infores/distildhttp://distild.jensenlab.org/about.htmlDistiLD databaseKPInformation ResourceCuratedI assume this is curated - but not sure what it is exactly.139
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releasedDisGeNETinfores:disgenethttps://w3id.org/infores/disgenethttp://www.disgenet.orgKPInformation ResourceCurated138
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releasedDrug Gene Interaction Databaseinfores:dgidbhttps://w3id.org/infores/dgidbhttp://dgidb.genome.wustl.eduDGIdbKPinformation on drug-gene interactions and druggable genes from publications, databases, and other web-based sources. Drug, gene, and interaction data are normalized and merged into conceptual groups.Information ResourceCurated135
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releasedDrug Repositioning Databaseinfores:repodbhttps://w3id.org/infores/repodbhttps://portal.dbmi.hms.harvard.edu/projects/repoDB/repoDBKPInformation ResourceCurated305
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releasedThis is a good example to review together to thelp us come up with some general principles / heuristics about defining short names /ids . ''drh' was proposed as short name - but this likely not meaningful to users as it is not an acronym in common use, and wont give drug repurposing hub as a top hit in a google search. If the rule is that the short name needs to be meaningful to most users, and make it clear what the resource is, we might have to spell this one out? Molecular Data Provider, SRI(VD) `drug-repurposing-hub' is fine and you are right, DRH is not widely used as an acronym.Drug Repurposing Hubinfores:drug-repurposing-hubhttps://w3id.org/infores/
drug-repurposing-hub		https://clue.io/repurposingKPcurated and annotated collection of FDA-approved drugs, clinical trial drugs, and pre-clinical tool compounds with a companion information resourceInformation ResourceCurated142
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releasedDrugBankinfores:drugbankhttps://w3id.org/infores/drugbankhttp://www.drugbank.ca/KPa comprehensive, free-to-access, online database containing information on drugs and drug targets. As both a bioinformatics and a cheminformatics resource, we combine detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) informationInformation ResourceCurated143
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releasedDrugCentralinfores:drugcentralhttps://w3id.org/infores/drugcentralhttp://drugcentral.orgKPonline drug information resource created and maintained by Division of Translational Informatics at University of New Mexico in collaboration with the IDG.Information ResourceCurated144
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releasedcreate infores just for ebi? or specifically for their proteins api?SRIEBI Proteins APIinfores:ebi-proteinshttps://w3id.org/infores/ebi-proteinshttp://smart-api.info/registry?q=855adaa128ce5aa58a091d99e520d396KP['Service Provider']The Proteins REST API provides access to key biological data from UniProt and data from Large Scale Studies (LSS) mapped to UniProt. The services provide sequence feature annotations from UniProtKB, variation data from UniProtKB and mapped from LSS (1000 Genomes, ExAC, ClinVar, TCGA, COSMIC, TOPMed and gnomAD), proteomics data mapped from MS-proteomics repositories (PeptideAtlas, MaxQB, EPD and ProteomicsDB), antigen sequences mapped from Human Protein Atlas (HPA), proteomes and taxonomy search and retrieval, reference genome coordinate mappings and data from UniParc. Go to https://www.ebi.ac.uk/proteins/api/doc/ to learn more.Information Resource[{'url': 'https://www.ebi.ac.uk/proteins/api'}]http://smart-api.info/registry?q=43af91b3d7cae43591083bff9d75c6ddCurated43
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releasedEnsembl geneinfores:ensembl-genehttps://w3id.org/infores/ensembl-genehttps://www.ebi.ac.uk/training/online/courses/ensembl-browsing-genomes/exploring-sources-of-biological-data/ensembl-genes/KPInformation ResourceCurated151
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releasedEntrezinfores:entrezhttps://w3id.org/infores/entrezhttps://www.ncbi.nlm.nih.gov/Web/Search/entrezfs.htmlKPInformation ResourceCurated152
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releasedEnvironmental conditions, treatments and exposures ontologyinfores:ectohttps://w3id.org/infores/ectohttps://obofoundry.org/ontology/ecto.htmlECTOKPInformation ResourceCurated148
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releasedEuropean Bioinformatics Instituteinfores:ebihttps://w3id.org/infores/ebihttps://www.ebi.ac.uk/KPInformation ResourceCurated145
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modifiedEuropean Bioinformatics Institute Gene to Phenotype Resourceinfores:ebi-gene2phenotypehttps://w3id.org/infores/ebi-gene2phenotypehttps://www.ebi.ac.uk/gene2phenotype/disclaimer0Information ResourceCurated146
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releasedEvidence & Conclusion Ontology infores:ecohttps://w3id.org/infores/ecohttps://obofoundry.org/ontology/eco.htmlECOKPInformation ResourceCurated147
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releasedExperimental Factor Ontologyinfores:efohttps://w3id.org/infores/efohttps://www.ebi.ac.uk/efo/EFOKPInformation ResourceCurated149
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releasedFood Databaseinfores:fooddbhttps://w3id.org/infores/fooddbhttps://foodb.ca/KPInformation ResourceCurated155
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releasedFood Ontologyinfores:foodonhttps://w3id.org/infores/foodonhttp://www.obofoundry.org/ontology/foodon.htmlFOODONKPInformation ResourceCurated156
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releasedHow handle cases like this where there are transformations of an ontology into different frameworks / formats with corresponding endpoints for accessing the transfromed representations (e.g. here, FMA into obo format, umls format . . . where there may be info content lost or inadvertatly changed int he process). I suspect we need separeate Infores ids for the root source and each transfrom (e.g. for a non-native obo ontology like FMA, we may need three Infores ids: 'fma', 'fma-obo', 'fma-umls')? Expander Agent, SRIFoundational Model of Anatomy Ontology (FMA -- both from UMLS and from OBO)infores:fma-obohttps://w3id.org/infores/fma-obohttps://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/FMA/index.htmlKPInformation ResourceCurated299
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approvedFoundational Model of Anatomy Ontology (FMA -- both from UMLS and from OBO)infores:fma-umlshttps://w3id.org/infores/fma-umlshttps://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/FMA/index.htmlKPInformation ResourceCurated300
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releasedGenAge Database of Ageing-Related Genesinfores:genagehttps://w3id.org/infores/genagehttp://genomics.senescence.info/genes/GenAge; The Aging Gene DatabaseKPInformation ResourceCurated158
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releasedGenDR Database of Dietary Restriction-Related Genesinfores:gendrhttps://w3id.org/infores/gendrhttp://genomics.senescence.info/diet/GenDRKPInformation ResourceCurated159
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releasedGene Ontologyinfores:gohttps://w3id.org/infores/gohttp://www.geneontology.org/KPInformation ResourceCurated163
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releasedGene Ontology Annotationsinfores:goahttps://w3id.org/infores/goahttp://www.geneontology.org/GOAKPInformation ResourceCurated165
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releasedGene Ontology Plusinfores:go-plushttps://w3id.org/infores/go-plusGO-PlusKPInformation ResourceCurated302
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releasedGene Ontoogy Causal Activity Model Annotationsinfores:go-camhttps://w3id.org/infores/go-camhttp://www.geneontology.org/GO-CAMKPInformation ResourceCurated164