ABCDEFGHIJKLMNOPQRSTUVWXYZAAABACADAEAFAGAHAIAJAKALAMANAOAPAQARASATAUAVAWAXAYAZBABBBCBDBEBFBGBHBIBJBKBLBMBNBOBPBQBRBSBTBUBVBWBXBYBZCACBCCCDCECFCGCHCICJCKCLCM
1
sampleid (Time Period, added by Brandon P.)
rs1042602_T
rs10756819_G
rs1110400_C
rs1126809_A
rs1129038_G
rs11547464_A
rs12203592_T
rs12441727_A
rs12821256_G
rs12896399_T
rs12913832_T
rs1393350_T
rs1426654_G
rs1470608_A
rs1545397_T
rs1667394_C
rs16891982_C
rs17128291_C
rs1800407_A
rs1800414_C
rs1805005_T
rs1805006_A
rs1805007_T
rs1805008_T
rs1805009_C
rs201326893_A
rs2228479_A
rs2238289_C
rs2378249_C
rs2402130_G
rs28777_C
rs3114908_T
rs312262906_A
rs3212355_A
rs4959270_A
rs6059655_T
rs6119471_C
rs6497292_C
rs683_G
rs8051733_C
rs885479_T
XPBlueEye
PIntermediateEye
PBrownEye
Full_AUC_BlueEye
Full_AUC_IntermediateEye
Full_AUC_BrownEye
Numb_missingSNPs_Eye
Name_missingSNPs_Eye
AUC_Loss_BlueEye
AUC_Loss_IntermediateEye
AUC_Loss_BrownEye
PBlondHairPBrownHairPRedHairPBlackHair
Full_AUC_BlondHair
Full_AUC_BrownHair
Full_AUC_RedHair
Full_AUC_BlackHair
Numb_missingSNPs_Hair
Name_missingSNPs_Hair
AUC_Loss_BlondHair
AUC_Loss_BrownHair
AUC_Loss_RedHair
AUC_Loss_BlackHair
PLightHairPDarkHair
Full_AUC_HairShade
Numb_missingSNPs_HairShade
Name_missingSNPs_HairShade
AUC_Loss_HairShade
PVeryPaleSkinPPaleSkinPIntermediateSkinPDarkSkin
PDarktoBlackSkin
Full_AUC_Very PaleSkin
Full_AUC_PaleSkin
Full_AUC_IntermediateSkin
Full_AUC_DarkSkin
Full_AUC_DarktoBlackSkin
Numb_missingSNPs_Skin
Name_missingSNPs_Skin
AUC_Loss_VeryPaleSkin
AUC_Loss_PaleSkin
AUC_Loss_IntermediateSkin
AUC_Loss_DarkSkin
AUC_Loss_DarktoBlackSkin
2
08943-1474 (Old Kingdom Egypt)NA200NA001NA0NANA0NA12NANANA100000NA0NANA020NANA2NA2NANANANANANANANA0.93897364420.73608861040.94607779094
rs16891982_C/rs1800407_A/rs12913832_T/rs1393350_T
0.35007050920.18864777370.35115541710.017828689240.27491171530.00036514106460.70689445440.81328159110.74106545350.92893301590.85924813210
rs312262906_A/rs885479_T/rs201326893_A/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.070726412810.055139480990.027036188870.069605418220.042028079650.95797192040.90544361148
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.091260543580.0026644147270.0014894160270.31907330230.6767728672.20E-120.82998844820.7627963470.7833042720.98061670080.993473368317
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs1393350_T/rs683_G/rs2238289_C/rs17128291_C/rs6497292_C/rs1129038_G/rs1470608_A/rs6059655_T/rs3212355_A/rs8051733_C
0.036203311510.022866341710.03069705650.021841487690.001517045928
3
AM14590 (Predynastic Egypt)NA000NA000NA0NANA2NA02NANANA000000NA0NANA222NANA0NA0NANANANANANANANA0.93897364420.73608861040.94607779094
rs16891982_C/rs1800407_A/rs12913832_T/rs1393350_T
0.35007050920.18864777370.35115541710.0059717230510.25276817460.00015253977080.74110756260.81328159110.74106545350.92893301590.85924813210
rs312262906_A/rs885479_T/rs201326893_A/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.070726412810.055139480990.027036188870.069605418220.0098249915190.99017500850.90544361148
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.091260543582.82E-247.21E-230.0066029894340.37394138570.61945562490.82998844820.7627963470.7833042720.98061670080.993473368317
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs1393350_T/rs683_G/rs2238289_C/rs17128291_C/rs6497292_C/rs1129038_G/rs1470608_A/rs6059655_T/rs3212355_A/rs8051733_C
0.036203311510.022866341710.03069705650.021841487690.001517045928
4
AM34443 (Late Period to Ptolemaic Egypt)NA200NA000NA0NANA2NA02NANANA000000NA0NANA020NANA0NA2NANANANANANANANA0.93897364420.73608861040.94607779094
rs16891982_C/rs1800407_A/rs12913832_T/rs1393350_T
0.35007050920.18864777370.35115541710.012428658670.24739273290.00015945669460.74001915180.81328159110.74106545350.92893301590.85924813210
rs312262906_A/rs885479_T/rs201326893_A/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.070726412810.055139480990.027036188870.069605418220.02803842280.97196157720.90544361148
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.091260543581.84E-272.80E-261.66E-050.013201487530.98678190040.82998844820.7627963470.7833042720.98061670080.993473368317
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs1393350_T/rs683_G/rs2238289_C/rs17128291_C/rs6497292_C/rs1129038_G/rs1470608_A/rs6059655_T/rs3212355_A/rs8051733_C
0.036203311510.022866341710.03069705650.021841487690.001517045928
5
AM36996 (Byzantine Egypt)NA200NA002NA0NANA1NA02NANANA000000NA0NANA020NANA2NA2NANANANANANANANA0.93897364420.73608861040.94607779094
rs16891982_C/rs1800407_A/rs12913832_T/rs1393350_T
0.35007050920.18864777370.35115541710.017828689240.27491171530.00036514106460.70689445440.81328159110.74106545350.92893301590.85924813210
rs312262906_A/rs885479_T/rs201326893_A/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.070726412810.055139480990.027036188870.069605418220.042028079650.95797192040.90544361148
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.091260543583.22E-177.36E-173.41E-050.030551969410.96941393790.82998844820.7627963470.7833042720.98061670080.993473368317
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs1393350_T/rs683_G/rs2238289_C/rs17128291_C/rs6497292_C/rs1129038_G/rs1470608_A/rs6059655_T/rs3212355_A/rs8051733_C
0.036203311510.022866341710.03069705650.021841487690.001517045928
6
I1072 (Natufian, Prehistoric Levant)NA200NA002NA0NANA2NA02NANANA000000NA0NANA121NANA1NA2NANANANANANANANA0.93897364420.73608861040.94607779094
rs16891982_C/rs1800407_A/rs12913832_T/rs1393350_T
0.35007050920.18864777370.35115541710.01033941750.26414619280.00023648762470.7252779020.81328159110.74106545350.92893301590.85924813210
rs312262906_A/rs885479_T/rs201326893_A/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.070726412810.055139480990.027036188870.069605418220.020437863080.97956213690.90544361148
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.091260543582.25E-281.20E-279.75E-070.0050724128080.9949266120.82998844820.7627963470.7833042720.98061670080.993473368317
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs1393350_T/rs683_G/rs2238289_C/rs17128291_C/rs6497292_C/rs1129038_G/rs1470608_A/rs6059655_T/rs3212355_A/rs8051733_C
0.036203311510.022866341710.03069705650.021841487690.001517045928
7
KDR001 (Nubian, Bronze Age; might be low quality)
NA200NA000NA0NANA2NA02NANANA000020NA0NANA000NANA2NA2NANANANANANANANA0.93897364420.73608861040.94607779094
rs16891982_C/rs1800407_A/rs12913832_T/rs1393350_T
0.35007050920.18864777370.35115541710.27549369950.056484681290.6628302390.0051913802310.81328159110.74106545350.92893301590.85924813210
rs312262906_A/rs885479_T/rs201326893_A/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.070726412810.055139480990.027036188870.069605418220.9824084960.017591504040.90544361148
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.091260543581.03E-216.03E-2018.52E-301.42E-280.82998844820.7627963470.7833042720.98061670080.993473368317
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs1393350_T/rs683_G/rs2238289_C/rs17128291_C/rs6497292_C/rs1129038_G/rs1470608_A/rs6059655_T/rs3212355_A/rs8051733_C
0.036203311510.022866341710.03069705650.021841487690.001517045928
8
KNIIL008 (Khnum-Nakht, Middle Kingdom Egypt)NA000NA000NA0NANA2NA02NANANA000000NA0NANA220NANA0NA2NANANANANANANANA0.93897364420.73608861040.94607779094
rs16891982_C/rs1800407_A/rs12913832_T/rs1393350_T
0.35007050920.18864777370.35115541710.0059717230510.25276817460.00015253977080.74110756260.81328159110.74106545350.92893301590.85924813210
rs312262906_A/rs885479_T/rs201326893_A/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.070726412810.055139480990.027036188870.069605418220.0098249915190.99017500850.90544361148
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.091260543582.21E-261.74E-250.00012592642010.030245661890.96962841170.82998844820.7627963470.7833042720.98061670080.993473368317
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs1393350_T/rs683_G/rs2238289_C/rs17128291_C/rs6497292_C/rs1129038_G/rs1470608_A/rs6059655_T/rs3212355_A/rs8051733_C
0.036203311510.022866341710.03069705650.021841487690.001517045928
9
NAIIL008 (Nakht-Ankh, Middle Kingdom)NA200NA000NA0NANA2NA02NANANA000000NA0NANA220NANA0NA1NANANANANANANANA0.93897364420.73608861040.94607779094
rs16891982_C/rs1800407_A/rs12913832_T/rs1393350_T
0.35007050920.18864777370.35115541710.0059717230510.25276817460.00015253977080.74110756260.81328159110.74106545350.92893301590.85924813210
rs312262906_A/rs885479_T/rs201326893_A/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.070726412810.055139480990.027036188870.069605418220.0098249915190.99017500850.90544361148
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.091260543583.94E-271.09E-252.97E-050.0091328678760.99083746970.82998844820.7627963470.7833042720.98061670080.993473368317
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs1393350_T/rs683_G/rs2238289_C/rs17128291_C/rs6497292_C/rs1129038_G/rs1470608_A/rs6059655_T/rs3212355_A/rs8051733_C
0.036203311510.022866341710.03069705650.021841487690.001517045928
10
provv.0611 (3rd Intermediate Period Egypt)NA000NA000NA2NANA2NA01NANANA000000NA0NANA020NANA2NA2NANANANANANANANA0.93897364420.73608861040.94607779094
rs16891982_C/rs1800407_A/rs12913832_T/rs1393350_T
0.35007050920.18864777370.35115541710.017828689240.27491171530.00036514106460.70689445440.81328159110.74106545350.92893301590.85924813210
rs312262906_A/rs885479_T/rs201326893_A/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.070726412810.055139480990.027036188870.069605418220.042028079650.95797192040.90544361148
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.091260543581.60E-241.28E-230.0031545593840.24275542550.75409001510.82998844820.7627963470.7833042720.98061670080.993473368317
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs1393350_T/rs683_G/rs2238289_C/rs17128291_C/rs6497292_C/rs1129038_G/rs1470608_A/rs6059655_T/rs3212355_A/rs8051733_C
0.036203311510.022866341710.03069705650.021841487690.001517045928
11
provv.1488adult (Byzantine Egypt)NA200NA000NA1NANA0NA00NANANA000000NA0NANA220NANA0NA2NANANANANANANANA0.93897364420.73608861040.94607779094
rs16891982_C/rs1800407_A/rs12913832_T/rs1393350_T
0.35007050920.18864777370.35115541710.0059717230510.25276817460.00015253977080.74110756260.81328159110.74106545350.92893301590.85924813210
rs312262906_A/rs885479_T/rs201326893_A/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.070726412810.055139480990.027036188870.069605418220.0098249915190.99017500850.90544361148
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.091260543580.00071668506160.00185034820.089082884670.37995336270.52839671940.82998844820.7627963470.7833042720.98061670080.993473368317
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs1393350_T/rs683_G/rs2238289_C/rs17128291_C/rs6497292_C/rs1129038_G/rs1470608_A/rs6059655_T/rs3212355_A/rs8051733_C
0.036203311510.022866341710.03069705650.021841487690.001517045928
12
provv.1488child (Byzantine Egypt)NA200NA000NA0NANA0NA10NANANA000000NA0NANA102NANA0NA1NANANANANANANANA0.93897364420.73608861040.94607779094
rs16891982_C/rs1800407_A/rs12913832_T/rs1393350_T
0.35007050920.18864777370.35115541710.42270554480.46681769390.0045418432860.1059349180.81328159110.74106545350.92893301590.85924813210
rs312262906_A/rs885479_T/rs201326893_A/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.070726412810.055139480990.027036188870.069605418220.78313750890.21686249110.90544361148
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.091260543580.011582082750.22776882880.69683039570.054061947540.0097567452250.82998844820.7627963470.7833042720.98061670080.993473368317
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs1393350_T/rs683_G/rs2238289_C/rs17128291_C/rs6497292_C/rs1129038_G/rs1470608_A/rs6059655_T/rs3212355_A/rs8051733_C
0.036203311510.022866341710.03069705650.021841487690.001517045928
13
suppl.05066 (New Kingdom Egypt)NA200NA000NA0NANA0NA02NANANA000000NA0NANA220NANA2NA2NANANANANANANANA0.93897364420.73608861040.94607779094
rs16891982_C/rs1800407_A/rs12913832_T/rs1393350_T
0.35007050920.18864777370.35115541710.0085857780680.28152278330.00035009495760.70954134370.81328159110.74106545350.92893301590.85924813210
rs312262906_A/rs885479_T/rs201326893_A/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.070726412810.055139480990.027036188870.069605418220.014866124330.98513387570.90544361148
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs683_G
0.091260543581.06E-052.49E-050.0052569721560.14918042350.84552711330.82998844820.7627963470.7833042720.98061670080.993473368317
rs885479_T/rs16891982_C/rs12821256_G/rs1042602_T/rs1800407_A/rs12913832_T/rs2378249_C/rs1393350_T/rs683_G/rs2238289_C/rs17128291_C/rs6497292_C/rs1129038_G/rs1470608_A/rs6059655_T/rs3212355_A/rs8051733_C
0.036203311510.022866341710.03069705650.021841487690.001517045928
14
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SOURCE HERE
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UNANNOTATED ORIGINAL VERSION
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