UK10K Flagship EGA datasets


1	Study	EGA Study	Dataset	EGA Dataset	Number of samples	Files available
2	UK10K_COHORT_ALSPAC	EGAS00001000090	UK10K_COHORT_ALSPAC REL-2012-06-02	EGAD00001000740	1927	Raw BAM, haplotype VCF
3	UK10K_COHORT_ALSPAC	EGAS00001000090	UK10K_COHORT_ALSPAC REL-2012-06-02: Phenotypes	EGAD00001000789	1927	Phenotypes
4	UK10K_COHORT_TWINSUK	EGAS00001000108	UK10K_COHORT_TWINSUK REL-2012-06-02	EGAD00001000741	1854	Raw BAM, haplotype VCF
5	UK10K_COHORT_TWINSUK	EGAS00001000108	UK10K_COHORT_TWINSUK REL-2012-06-02: Phenotypes	EGAD00001000790	1854	Phenotypes
6	UK10K_COHORT_IMPUTATION	EGAS00001000713	UK10K_COHORT_IMPUTATION REL-2012-06-02	EGAD00001000776	3781	IMPUTE2 reference panel
7	UK10K_NEURO_ABERDEEN	EGAS00001000109	UK10K_NEURO_ABERDEEN REL-2013-04-20	EGAD00001000433	392	Raw BAM, genotype VCF
8	UK10K_NEURO_ASD_BIONED	EGAS00001000111	UK10K_NEURO_ASD_BIONED REL-2013-04-20	EGAD00001000434	77	Raw BAM, genotype VCF
9	UK10K_NEURO_ASD_FI	EGAS00001000110	UK10K_NEURO_ASD_FI REL-2013-04-20	EGAD00001000435	84	Raw BAM, genotype VCF
10	UK10K_NEURO_ASD_GALLAGHER	EGAS00001000112	UK10K_NEURO_ASD_GALLAGHER REL-2013-04-20	EGAD00001000436	77	Raw BAM, genotype VCF
11	UK10K_NEURO_ASD_MGAS	EGAS00001000113	UK10K_NEURO_ASD_MGAS REL-2013-04-20	EGAD00001000613	97	Raw BAM, genotype VCF
12	UK10K_NEURO_ASD_SKUSE	EGAS00001000114	UK10K_NEURO_ASD_SKUSE REL-2013-04-20	EGAD00001000614	341	Raw BAM, genotype VCF
13	UK10K_NEURO_ASD_TAMPERE	EGAS00001000115	UK10K_NEURO_ASD_TAMPERE REL-2013-04-20	EGAD00001000437	55	Raw BAM, genotype VCF
14	UK10K_NEURO_EDINBURGH	EGAS00001000117	UK10K_NEURO_EDINBURGH REL-2013-04-20	EGAD00001000438	234	Raw BAM, genotype VCF
15	UK10K_NEURO_FSZ	EGAS00001000118	UK10K_NEURO_FSZ REL-2013-04-20	EGAD00001000615	128	Raw BAM, genotype VCF
16	UK10K_NEURO_FSZNK	EGAS00001000119	UK10K_NEURO_FSZNK REL-2013-04-20	EGAD00001000439	285	Raw BAM, genotype VCF
17	UK10K_NEURO_GURLING	EGAS00001000225	UK10K_NEURO_GURLING REL-2013-04-20	EGAD00001000440	48	Raw BAM, genotype VCF
18	UK10K_NEURO_IMGSAC	EGAS00001000120	UK10K_NEURO_IMGSAC REL-2013-04-20	EGAD00001000441	113	Raw BAM, genotype VCF
19	UK10K_NEURO_IOP_COLLIER	EGAS00001000121	UK10K_NEURO_IOP_COLLIER REL-2013-04-20	EGAD00001000442	172	Raw BAM, genotype VCF
20	UK10K_NEURO_MUIR	EGAS00001000122	UK10K_NEURO_MUIR REL-2013-04-20	EGAD00001000443	175	Raw BAM, genotype VCF
21	UK10K_NEURO_UKSCZ	EGAS00001000123	UK10K_NEURO_UKSCZ REL-2013-04-20	EGAD00001000430	553	Raw BAM, genotype VCF
22	UK10K_OBESITY_GS	EGAS00001000242	UK10K_OBESITY_GS REL-2013-04-20	EGAD00001000431	428	Raw BAM, genotype VCF
23	UK10K_OBESITY_SCOOP	EGAS00001000124	UK10K_OBESITY_SCOOP REL-2013-04-20	EGAD00001000432	985	Raw BAM, genotype VCF
24	UK10K_OBESITY_TWINSUK	EGAS00001000306	UK10K_OBESITY_TWINSUK REL-2013-04-20	EGAD00001000429	68	Raw BAM, genotype VCF
25	UK10K_RARE_CHD	EGAS00001000125	UK10K_RARE_CHD REL-2013-04-20	EGAD00001000413	125	Raw BAM, genotype VCF
26	UK10K_RARE_CILIOPATHIES	EGAS00001000126	UK10K_RARE_CILIOPATHIES REL-2013-04-20	EGAD00001000414	122	Raw BAM, genotype VCF
27	UK10K_RARE_COLOBOMA	EGAS00001000127	UK10K_RARE_COLOBOMA REL-2013-04-20	EGAD00001000415	123	Raw BAM, genotype VCF
28	UK10K_RARE_FIND	EGAS00001000128	UK10K_RARE_FIND REL-2013-04-20	EGAD00001000416	124	Raw BAM, genotype VCF
29	UK10K_RARE_HYPERCHOL	EGAS00001000129	UK10K_RARE_HYPERCHOL REL-2013-04-20	EGAD00001000417	125	Raw BAM, genotype VCF
30	UK10K_RARE_NEUROMUSCULAR	EGAS00001000101	UK10K_RARE_NEUROMUSCULAR REL-2013-04-20	EGAD00001000418	119	Raw BAM, genotype VCF
31	UK10K_RARE_SIR	EGAS00001000130	UK10K_RARE_SIR REL-2013-04-20	EGAD00001000419	121	Raw BAM, genotype VCF
32	UK10K_RARE_THYROID	EGAS00001000131	UK10K_RARE_THYROID REL-2013-04-20	EGAD00001000420	123	Raw BAM, genotype VCF

1

Study

EGA Study

Dataset

EGA Dataset

Number of samples

Files available

2

UK10K_COHORT_ALSPAC

EGAS00001000090

UK10K_COHORT_ALSPAC REL-2012-06-02

EGAD00001000740

1927

Raw BAM, haplotype VCF

3

UK10K_COHORT_ALSPAC

EGAS00001000090

UK10K_COHORT_ALSPAC REL-2012-06-02: Phenotypes

EGAD00001000789

1927

Phenotypes

4

UK10K_COHORT_TWINSUK

EGAS00001000108

UK10K_COHORT_TWINSUK REL-2012-06-02

EGAD00001000741

1854

Raw BAM, haplotype VCF

5

UK10K_COHORT_TWINSUK

EGAS00001000108

UK10K_COHORT_TWINSUK REL-2012-06-02: Phenotypes

EGAD00001000790

1854

Phenotypes

6

UK10K_COHORT_IMPUTATION

EGAS00001000713

UK10K_COHORT_IMPUTATION REL-2012-06-02

EGAD00001000776

3781

IMPUTE2 reference panel

7

UK10K_NEURO_ABERDEEN

EGAS00001000109

UK10K_NEURO_ABERDEEN REL-2013-04-20

EGAD00001000433

392

Raw BAM, genotype VCF

8

UK10K_NEURO_ASD_BIONED

EGAS00001000111

UK10K_NEURO_ASD_BIONED REL-2013-04-20

EGAD00001000434

77

Raw BAM, genotype VCF

9

UK10K_NEURO_ASD_FI

EGAS00001000110

UK10K_NEURO_ASD_FI REL-2013-04-20

EGAD00001000435

84

Raw BAM, genotype VCF

10

UK10K_NEURO_ASD_GALLAGHER

EGAS00001000112

UK10K_NEURO_ASD_GALLAGHER REL-2013-04-20

EGAD00001000436

77

Raw BAM, genotype VCF

11

UK10K_NEURO_ASD_MGAS

EGAS00001000113

UK10K_NEURO_ASD_MGAS REL-2013-04-20

EGAD00001000613

97

Raw BAM, genotype VCF

12

UK10K_NEURO_ASD_SKUSE

EGAS00001000114

UK10K_NEURO_ASD_SKUSE REL-2013-04-20

EGAD00001000614

341

Raw BAM, genotype VCF

13

UK10K_NEURO_ASD_TAMPERE

EGAS00001000115

UK10K_NEURO_ASD_TAMPERE REL-2013-04-20

EGAD00001000437

55

Raw BAM, genotype VCF

14

UK10K_NEURO_EDINBURGH

EGAS00001000117

UK10K_NEURO_EDINBURGH REL-2013-04-20

EGAD00001000438

234

Raw BAM, genotype VCF

15

UK10K_NEURO_FSZ

EGAS00001000118

UK10K_NEURO_FSZ REL-2013-04-20

EGAD00001000615

128

Raw BAM, genotype VCF

16

UK10K_NEURO_FSZNK

EGAS00001000119

UK10K_NEURO_FSZNK REL-2013-04-20

EGAD00001000439

285

Raw BAM, genotype VCF

17

UK10K_NEURO_GURLING

EGAS00001000225

UK10K_NEURO_GURLING REL-2013-04-20

EGAD00001000440

48

Raw BAM, genotype VCF

18

UK10K_NEURO_IMGSAC

EGAS00001000120

UK10K_NEURO_IMGSAC REL-2013-04-20

EGAD00001000441

113

Raw BAM, genotype VCF

19

UK10K_NEURO_IOP_COLLIER

EGAS00001000121

UK10K_NEURO_IOP_COLLIER REL-2013-04-20

EGAD00001000442

172

Raw BAM, genotype VCF

20

UK10K_NEURO_MUIR

EGAS00001000122

UK10K_NEURO_MUIR REL-2013-04-20

EGAD00001000443

175

Raw BAM, genotype VCF

21

UK10K_NEURO_UKSCZ

EGAS00001000123

UK10K_NEURO_UKSCZ REL-2013-04-20

EGAD00001000430

553

Raw BAM, genotype VCF

22

UK10K_OBESITY_GS

EGAS00001000242

UK10K_OBESITY_GS REL-2013-04-20

EGAD00001000431

428

Raw BAM, genotype VCF

23

UK10K_OBESITY_SCOOP

EGAS00001000124

UK10K_OBESITY_SCOOP REL-2013-04-20

EGAD00001000432

985

Raw BAM, genotype VCF

24

UK10K_OBESITY_TWINSUK

EGAS00001000306

UK10K_OBESITY_TWINSUK REL-2013-04-20

EGAD00001000429

68

Raw BAM, genotype VCF

25

UK10K_RARE_CHD

EGAS00001000125

UK10K_RARE_CHD REL-2013-04-20

EGAD00001000413

125

Raw BAM, genotype VCF

26

UK10K_RARE_CILIOPATHIES

EGAS00001000126

UK10K_RARE_CILIOPATHIES REL-2013-04-20

EGAD00001000414

122

Raw BAM, genotype VCF

27

UK10K_RARE_COLOBOMA

EGAS00001000127

UK10K_RARE_COLOBOMA REL-2013-04-20

EGAD00001000415

123

Raw BAM, genotype VCF

28

UK10K_RARE_FIND

EGAS00001000128

UK10K_RARE_FIND REL-2013-04-20

EGAD00001000416

124

Raw BAM, genotype VCF

29

UK10K_RARE_HYPERCHOL

EGAS00001000129

UK10K_RARE_HYPERCHOL REL-2013-04-20

EGAD00001000417

125

Raw BAM, genotype VCF

30

UK10K_RARE_NEUROMUSCULAR

EGAS00001000101

UK10K_RARE_NEUROMUSCULAR REL-2013-04-20

EGAD00001000418

119

Raw BAM, genotype VCF

31

UK10K_RARE_SIR

EGAS00001000130

UK10K_RARE_SIR REL-2013-04-20

EGAD00001000419

121

Raw BAM, genotype VCF

32

UK10K_RARE_THYROID

EGAS00001000131

UK10K_RARE_THYROID REL-2013-04-20

EGAD00001000420

123

Raw BAM, genotype VCF