modENCODE.fly.metadata.qc
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ABCDEFHILMNOQRSTYZAAABAC
1
IDXRATING ( DO NOT USE -1s)FILENAME PREFIXTARGET TF FLYBASE GENE IDTARGET TF CG IDTARGET TF COMMON NAMESTAGESTRAINIDR OPTIMAL PEAKSRESCUE RATIO (Np / Nt)POOLED CONS.
IDR 5% (Np)
TRUE REP CONS. PEAKS
IDR 5% (Nt)
PPR peak rank corr.PPR IDR vs. peak rank corr.REP peak rank corr.REP IDR vs. peak rank corr.PPR pval 1e-5 overlapREP pval 1e-5 overlapCombrep MACS2 pval 1e-5Max Rep MACS2 pval 1e-5COMMENT (This section is not complete). More comments to be added
2
215T-eve-GFP.3401_eve_Embryos-8-16-hr_UofC_stnFBgn0000606CG2328eveE8-165T-eve-GFP.340124981.202696196249820770.6769160.6714410.5855340.6948255224559351147872
3
317T-CAD.2626_Caudal_Embryos-0-4-hr_UofC_stnFBgn0000251CG1759cadE0-47T-CAD.262615373.46952595915374430.5602830.6252970.2502550.4791032119103153566207
4
41Hr46-GFP.TCF-nonISO1-0-8_TCF_E0-8_UofC_stnFBgn0085432CG34403panE0-8Hr46-GFP.TCF-nonISO1-0-85381.3901808795383870.2890480.4095160.2447890.50581254749810322935
5
51Iso1.CG8478-WPP_CG8478_WPP_UofC_stnFBgn0037746CG8478CG8478WPPIso1.CG8478-WPP20981.408053691209814900.5243160.6587360.4699760.6388431865126937752963
6
61Iso1.CNC-AdultFemale_CNC_AdultFemale_UofC_stnFBgn0262975CG43286cncAdultFemaleIso1.CNC-AdultFemale4911.7108013944912870.5873360.5997110.4401680.376935133575421839Rep2 is worse
7
71Iso1.CNC-AdultMale_CNC_AdultMale_UofC_stnFBgn0262975CG43286cncAdultMaleIso1.CNC-AdultMale28601.09118657262128600.5489890.6178710.5338120.6555892673321734924807
8
81Iso1.Fru-0-8_Fru_E0-8_UofC_stnFBgn0004652CG14307fruE0-8Iso1.Fru-0-83273.847058824327850.2569650.379958-0.0090610.34157887066915466519
9
91Iso1.Gro-WPP_Gro_WPP_UofC_stnFBgn0001139CG8384groWPPIso1.Gro-WPP35101.277292576351027480.6205750.7168830.5314240.585634123330141658811
10
101Iso1.HP1-8-16_HP1_E8-16_UofC_stnFBgn0030082CG7041HP1bE8-16Iso1.HP1-8-1636282.834375362812800.4418480.5427020.3227230.55328848583536710311013
11
111Iso1.Hth-0-8_Hth_E0-8_UofC_stnFBgn0001235CG17117hthE0-8Iso1.Hth-0-822881.20994183189122880.4992560.6719560.5558660.6613442080276730964635
12
121Iso1.Hth-8-16_Hth_E8-16_UofC_stnFBgn0001235CG17117hthE8-16Iso1.Hth-8-1616181.192336035161813570.3834790.5346320.3552540.4195532310191133338794
13
131Iso1.Myc-W3L_Myc_W3L_UofC_stnFBgn0262656CG10798dmL3Iso1.Myc-W3L44621.265456608446235260.7658330.8217480.6714830.6403713968377740586075
14
141Iso1.SuHw-16-24_SuHw_E16-24_UofC_stnFBgn0003567CG8573su(Hw)E16-24Iso1.SuHw-16-2437721.165276491377232370.6176940.5811590.5076670.6857943583398150065625
15
151Iso1.SuHw-WPP_SuHw_WPP_UofC_stnFBgn0003567CG8573su(Hw)WPPIso1.SuHw-WPP53531.020591039535352450.5895430.5281330.5483930.6794374830514853925785
16
161Iso1.TCF-16-24_TCF_E16-24_UofC_stnFBgn0085432CG34403panE16-24Iso1.TCF-16-243841.5058823533842550.5353710.5856720.394820.5626964264334562774
17
171Iso1.TCF-W3L_TCF_W3L_UofC_stnFBgn0085432CG34403panL3Iso1.TCF-W3L5361.135593225364720.7886080.779770.7221050.6184715346095401104
18
181Iso1.TCF-WPP_TCF_WPP_UofC_stnFBgn0085432CG34403panWPPIso1.TCF-WPP9051.0647058829058500.8042350.8133220.652250.74242883286613391707Control dataset has very few reads
19
191Iso1.Trl-8-16_Trl_E8-16_UofC_stnFBgn0013263CG33261TrlE8-16Iso1.Trl-8-1663631.174418605636354180.704220.6027190.3968710.7448035667576373398331
20
211Iso1.Yki-8-16_Yki_E8-16_UofC_stnFBgn0034970CG4005ykiE8-16Iso1.Yki-8-1619764.3144104819764580.6794870.7098610.2988930.5904781654168926304403
21
221Notch-GFP.Notch-GFP-vMock-W3L_Notch_W3L_UofC_stnFBgn0004647CG3936NL3Notch-GFP.Notch-GFP-vMock-W3L29251.963087248292514900.5025760.601930.3733780.5242261935175537754533
22
231Notch-GFP.Notch-GFP-W3L_Notch_W3L_UofC_stnFBgn0004647CG3936NL3Notch-GFP.Notch-GFP-W3L25161.536019536251616380.5655310.6771790.4688110.5498872059181733444308
23
241S2-DRSC.2638_CTCF_Late-Embryonic-stage_UofC_stnFBgn0035769CG8591CTCFELS2-DRSC.263829321.099774944293226660.7766880.7774410.7376920.6986963637358658445172
24
251S2-DRSC.2639_CTCF_Late-Embryonic-stage_UofC_stnFBgn0035769CG8591CTCFELS2-DRSC.263924471.265907915193324470.8332330.8100860.9111740.8369862237272232663174
25
261S2.CG8478-S2_CG8478_S2_UofC_stnFBgn0037746CG8478CG8478S2S2.CG8478-S213431.40187891495813430.5058770.643990.5567990.6140621022120113472936
26
271strain.3232_Sin3A_Embryos-0-12-hr_UofC_stnFBgn0022764CG8815Sin3AE0-12strain.323230141.062015504301428380.9004790.895570.8931040.8799553665369938014289
27
281strain.3234_tll_Embryos-0-4-hr_UofC_stnFBgn0003720CG1378tllE0-4strain.323411521.26872246711529080.3948920.5650890.3133670.4388652236215462326991
28
291strain.3238_GAF_Embryos-16-24-hr_UofC_stnFBgn0013263CG33261TrlE16-24strain.323860471.569426421604738530.9567440.9331420.8508650.8775646380477284288327Control dataset has very few reads
29
301strain.3240_CG8478_Embryos-8-16-hr_UofC_stnFBgn0037746CG8478CG8478E8-16strain.324012741.72395128612747390.2612230.480220.3888750.53624920171284922520079
30
311strain.3242_Huckebein_Embryos-8-16-hr_UofC_stnFBgn0261434CG9768hkbE8-16strain.32421961.6470588241961190.7592670.6128480.6475870.585621336268266883
31
321strain.3243_KNI_Embryos-8-16-hr_UofC_stnFBgn0001320CG4717kniE8-16strain.32438051.6462167698054890.7381680.7896560.5496820.65995587970916022172
32
331strain.3390_Hr39_Embryos-16-24-hr_UofC_stnFBgn0261239CG8676Hr39E16-24strain.339012622.39468690712625270.5680480.7025280.4715970.7115221219133428032841
33
341strain.3391_HP1_Embryos-16-24-hr_UofC_stnFBgn0030082CG7041HP1bE16-24strain.339124033.2429149824037410.7631390.7773590.4251220.2244583069259744494305
34
351strain.3392_HP1_Embryos-16-24-hr_UofC_stnFBgn0030082CG7041HP1bE16-24strain.339220952.21693121720959450.7038250.7950710.4686680.7061732649338145337600
35
361strain.3393_bonus_Embryos-16-24-hr_UofC_stnFBgn0023097CG5206bonE16-24strain.33939041.0548424749048570.5270360.6067220.4968740.6170531924206839815837
36
371strain.3394_Kruppel_Embryos-16-24-hr_UofC_stnFBgn0001325CG3340KrE16-24strain.33944721.3447293454723510.6044060.7236620.4999450.53365946037410101402
37
381strain.3395_Dichaete_Embryos-0-8-hr_UofC_stnFBgn0000411CG5893DE0-8strain.33953572.5140845073571420.2330010.2829090.1457190.54671143737022603548
38
391strain.3396_SuVar3-9_Embryos-0-12-hr_UofC_stnFBgn0263755CG43664Su(var)3-9E0-12strain.339630901.15470852309026760.6447520.7651330.6241790.71781560216072753510341
39
401strain.3399_trem_Adult-Female_UofC_stnFBgn0038767CG4413tremAdult-Femalestrain.339912861.3963083612869210.8198350.7734110.6741740.5149952131154519923753
40
411Y-cn-bw-sp.2627_HDAC4a_Embryos-0-12-hr_UofC_stnFBgn0041210CG1770HDAC4aE0-12Y-cn-bw-sp.262718051.115574784161818050.6955540.7025410.7371520.7223912092242838564063
41
431Y-cn-bw-sp.2629_HDAC11_Embryos-0-12-hr_UofC_stnFBgn0051119CG31119HDAC11E0-12Y-cn-bw-sp.262920441.150900901177620440.76920.7701890.8316360.8197922769337632064868
42
441Y-cn-bw-sp.2630_HDAC11_Embryos-0-12-hr_UofC_stnFBgn0051119CG31119HDAC11E0-12Y-cn-bw-sp.26309793.0981012663169790.2661620.4570310.4567270.4466471661290745296572
43
451Y-cn-bw-sp.2633_HDAC3_Embryos-0-12-hr_UofC_stnFBgn0025825CG2128HDAC3E0-12Y-cn-bw-sp.263359881.269181857471859880.7732640.8134930.8494570.8217225358584574316466
44
461Y-cn-bw-sp.2634_HDAC3_Embryos-0-12-hr_UofC_stnFBgn0025825CG2128HDAC3E0-12Y-cn-bw-sp.263465661.183916336554665660.829670.8408530.8950160.8292195522594470076346
45
471Y-cn-bw-sp.2636_HDAC1_Embryos-0-12-hr_UofC_stnFBgn0015805CG7471HDAC1E0-12Y-cn-bw-sp.263644121.05524994418144120.7330830.785730.7370380.7970465747656289888792
46
48010T-DFD-GFP.3229_dfd_Embryos-16-24-hr_UofC_stnFBgn0000439CG2189DfdE16-2410T-DFD-GFP.32294042.748299324041470.0019920.185092-0.10366-0.33499528720618811982Potential mislabeling, Rep1 undersequenced
47
1010T-DFD-GFP.3230_dfd_Larvae-L3-stage_UofC_stnFBgn0000439CG2189DfdL310T-DFD-GFP.32306511.0568181826166510.288980.439917-0.141381-0.5666552754226370064909Rep2 undersequenced
48
4907T-CAD.3403_Caudal_Larvae-L3-stage_UofC_stnFBgn0000251CG1759cadL37T-CAD.34035871.8753993615873130.5502950.6800620.462980.42470367551117062692Rep1 and Rep3 very weak
49
500AbdB-GFP.AbdB-GFP-vMock-W3L_AbdB_W3L_UofC_stnFBgn0000015CG11648Abd-BL3AbdB-GFP.AbdB-GFP-vMock-W3L5261.4293478265263680.2933980.479790.2164950.50733950657517216214
50
510AbdB-GFP.AbdB-GFP-W3L_AbdB_W3L_UofC_stnFBgn0000015CG11648Abd-BL3AbdB-GFP.AbdB-GFP-W3L7374.5214723937371630.5053970.6153860.3110640.55954689786610796428
51
520Dfd-GFP.Dfd-GFP-0-8_Dfd_E0-8_UofC_stnFBgn0000439CG2189DfdE0-8Dfd-GFP.Dfd-GFP-0-89401.4050822129406690.6961350.7145720.5360220.61088888079710432245
52
530EcR-GFP.2641_EcR_pupae-WPP-10-11-hr_UofC_stnFBgn0000546CG1765EcRpupae-WPP-10-11-hrEcR-GFP.26416491.0467741946496200.3959890.6028810.428550.59077779085021012472
53
540EcR-GFP.2642_EcR_WPP-30-33-hr_UofC_stnFBgn0000546CG1765EcRWPP-30-33-hrEcR-GFP.264210903.56209150310903060.5592150.6341010.2965360.385497144657131706196Rep2 and 3 are terrible
54
550Eip74-GFP.Eip74-GFP-8-16_Eip74_E8-16_UofC_stnFBgn0000567CG32180Eip74EFE8-16Eip74-GFP.Eip74-GFP-8-167541.0864553316947540.5311220.603370.5853340.7135625827498271655
55
560Exd-GFP.Cmi-0-8_Cmi_E0-8_UofC_stnFBgn0263667CG5591LptE0-8Exd-GFP.Cmi-0-816855.54276315816853040.3521820.4464690.098475-0.098476117248431365218Rep1 is bad
56
570Exd-GFP.TBP-0-8_TBP_E0-8_UofC_stnFBgn0003687CG9874TbpE0-8Exd-GFP.TBP-0-850301.593284764503031570.5854590.6959820.4622070.4488184568371266487643
57
580Hr78-GFP.Hr78-GFP-8-16_Hr78_E8-16_UofC_stnFBgn0015239CG7199Hr78E8-16Hr78-GFP.Hr78-GFP-8-167314.0386740337311810.4638980.62270.118089-0.10119656223411892099
58
590Hr78-GFP.Hr78-GFP-W3L_Hr78_W3L_UofC_stnFBgn0015239CG7199Hr78L3Hr78-GFP.Hr78-GFP-W3L12883.03773584912884240.4429270.5444450.2620650.422244116740517517106
59
600Iso1.br-core-0-8_br-core_E0-8_UofC_stnFBgn0000210CG11491brE0-8Iso1.br-core-0-83811.2657807313013810.2567170.4296970.2840790.423581883106910373335
60
610Iso1.CG16778-0-8_CG16778_E0-8_UofC_stnFBgn0003715CG16778CG16778E0-8Iso1.CG16778-0-81501.0714285711501400.217620.2816270.2410970.4252852801973561473
61
630Iso1.CNC-16-24_CNC_E16-24_UofC_stnFBgn0262975CG43286cncE16-24Iso1.CNC-16-246916.3394495416911090.4198150.5535770.1330870.2717876501405884171Rep2 is bad
62
640Iso1.CNC-WPP_CNC_WPP_UofC_stnFBgn0262975CG43286cncWPPIso1.CNC-WPP1471.1761471250.4585190.4438150.3740350.3863136122157868
63
650Iso1.Dll-WPP_Dll_WPP_UofC_stnFBgn0000157CG3629DllWPPIso1.Dll-WPP29941.023239918299429260.6041140.6654050.6085530.6747542181257025384243
64
680Iso1.H-0-8_H_E0-8_UofC_stnFBgn0001168CG6494hE0-8Iso1.H-0-817824.01351351444417820.149180.333188-0.054833-0.188221517185367996155
65
690Iso1.modMDG4-W3L_modMDG4_W3L_UofC_stnFBgn0002781CG32491mod(mdg4)L3Iso1.modMDG4-W3L2351.4506172842351620.5126730.3903350.4475680.3994542252332541000
66
700Iso1.Prd-RF12-0-12_Prd_E0-12_UofC_stnFBgn0003145CG6716prdE0-12Iso1.Prd-RF12-0-123531.0114613183533490.5605780.4571410.5422770.429364404300406819
67
710Iso1.Prd-RF13-0-12_Prd_E0-12_UofC_stnFBgn0003145CG6716prdE0-12Iso1.Prd-RF13-0-121321.885714286132700.4724270.3620220.2583750.279731191371281211
68
720Iso1.psq-Kc_psq_Kc167_UofC_stnFBgn0263102CG2368psqKc167Iso1.psq-Kc4461.5815602844462820.5520830.5140550.4440740.4212124793094751099
69
730Iso1.psq-WPP_psq_WPP_UofC_stnFBgn0263102CG2368psqWPPIso1.psq-WPP100371.642857141003140.3646510.446140.0719810.33365874047818513938
70
740Iso1.sc-0-12_sc_E0-12_UofC_stnFBgn0004170CG3827scE0-12Iso1.sc-0-122012.421686747832010.1734040.4082120.0433080.1329532953303761965
71
750Iso1.sc-0-8_sc_E0-8_UofC_stnFBgn0004170CG3827scE0-8Iso1.sc-0-81431.2543859651141430.1596050.193890.189490.227693113203209949
72
760Iso1.Sin3A-Kc_Sin3A_Kc167_UofC_stnFBgn0022764CG8815Sin3AKc167Iso1.Sin3A-Kc5941.1401151635945210.3962220.1780430.28803-0.0826986536545721522
73
790Iso1.Stat92E-WPP_Stat92E_WPP_UofC_stnFBgn0016917CG4257Stat92EWPPIso1.Stat92E-WPP2952.1532846722951370.0747050.4244590.2136570.45239813998570600
74
800Iso1.SuH-0-8_SuH_E0-8_UofC_stnFBgn0004837CG3497Su(H)E0-8Iso1.SuH-0-81271.0762711861181270.2591230.291952-0.3378650.17105518875421114451
75
810Iso1.SuH-16-24_SuH_E16-24_UofC_stnFBgn0004837CG3497Su(H)E16-24Iso1.SuH-16-242401.116279072402150.328440.3796720.1335350.2934155743704803592
76
820Iso1.SuH-8-16_SuH_E8-16_UofC_stnFBgn0004837CG3497Su(H)E8-16Iso1.SuH-8-16481.71428571448280.3825430.1714360.3546750.3809372263155
77
830Iso1.TCF-0-8_TCF_E0-8_UofC_stnFBgn0085432CG34403panE0-8Iso1.TCF-0-814762.26728110614766510.5173720.5743190.3273510.394736193153119059287
78
840Iso1.Ttk-Kc_Ttk_Kc167_UofC_stnFBgn0003870CG1856ttkKc167Iso1.Ttk-Kc43091.828947368235643090.4887480.5887270.5658390.6588874639482244747085
79
200Iso1.Usp-W3L_Usp_W3L_UofC_stnFBgn0003964CG4380uspL3Iso1.Usp-W3L4431.2991202354433410.1854190.191045-0.345544-0.418884109193025456758
80
850Kc167.H-Kc_H_Kc167_UofC_stnFBgn0001168CG6494hKc167Kc167.H-Kc2161.3935483871552160.5304250.4020880.1405390.4742176713570641
81
860Kc167.insv-Kc_insv_Kc167_UofC_stnFBgn0031434CG3227insvKc167Kc167.insv-Kc2181.1413612571912180.4182490.2989440.2050490.3616161325791745437
82
870Kc167.Myc-Kc167_Myc_Kc167_UofC_stnFBgn0262656CG10798dmKc167Kc167.Myc-Kc1671001.408450704100710.433570.4314430.3885740.493826100101206579
83
880Kc167.SuH-Kc_SuH_Kc167_UofC_stnFBgn0004837CG3497Su(H)Kc167Kc167.SuH-Kc20182.59050064277920180.757870.4187560.7696080.76584490016239242345
84
900LolaI-GFP.LolaI-GFP-W3L_LolaI_W3L_UofC_stnFBgn0005630CG12052lolaL3LolaI-GFP.LolaI-GFP-W3L3302.1710526321523300.0786580.0644270.2438570.1455664654683312768
85
910LolaJ-GFP.LolaJ-GFP-0-12_LolaJ_E0-12_UofC_stnFBgn0005630CG12052lolaE0-12LolaJ-GFP.LolaJ-GFP-0-122961.0724637682962760.2670960.3187580.3003910.3671156661213691811
86
920LolaJ-GFP.LolaJ-GFP-12-24_LolaJ_E12-24_UofC_stnFBgn0005630CG12052lolaE12-24LolaJ-GFP.LolaJ-GFP-12-248142.0607594948143950.5214390.6359660.3802960.49956272343410232229
87
930R13-YFP.3400_eve_Embryos-1-6-hr_UofC_stnFBgn0000606CG2328eveE1-6R13-YFP.34001601.4159292041601130.0914260.2311970.0039310.36286218717514171289
88
950Stat92E-GFP.Stat92E-GFP-0-12_Stat92E_E0-12_UofC_stnFBgn0016917CG4257Stat92EE0-12Stat92E-GFP.Stat92E-GFP-0-122061.1381215472061810.397730.189853-0.141801-0.1288851821641511361
89
960Stat92E-GFP.Stat92E-GFP-12-24_Stat92E_E12-24_UofC_stnFBgn0016917CG4257Stat92EE12-24Stat92E-GFP.Stat92E-GFP-12-241642.246575342164730.3266340.2536080.1577480.1174961881761751690
90
1000strain.3237_PCL_Embryos-0-8-hr_UofC_stnFBgn0003044CG5109PclE0-8strain.323712261.207881773101512260.001316-0.6372970.2086360.33402417471676100979181Rep2 is dead and Rep1 and 3 are reasonably different
91
1010strain.3239_eve_Embryos-1-6-hr_UofC_stnFBgn0000606CG2328eveE1-6strain.32393541.0892307693543250.3446520.5400420.300720.44417948148119023077
92
1040USP-GFP.USP-GFP-0-12_USP_E0-12_UofC_stnFBgn0003964CG4380uspE0-12USP-GFP.USP-GFP-0-124992.0534979424992430.2254940.413840.2696190.16538140131515291541Rep1 is very poor
93
1050USP-GFP.USP-GFP-WPP12_USP_WPP12_UofC_stnFBgn0003964CG4380uspWPP12USP-GFP.USP-GFP-WPP123621.1528662423143620.1637010.1301860.3447330.30522158176510693008
94
106-17T-CAD.3231_Caudal_Adult-Female-3-days_UofC_stnFBgn0000251CG1759cadAdult-Female-3-days7T-CAD.3231673126.92467312500.7601440.8201190.107654-0.118058078661150211044mislabeled
95
107-1EcR-GFP.2640_EcR_Larvae-L3-stage_UofC_stnFBgn0000546CG1765EcRL3EcR-GFP.26406362.0516129036363100.5435590.6374690.462980.40671866251117062692
96
108-1Exd-GFP.Bcd-0-8_Bcd_E0-8_UofC_stnFBgn0000166CG1034bcdE0-8Exd-GFP.Bcd-0-83131.2420634923132520.2739460.3490350.2467740.2981091091433691347Too few peaks for Bcd
97
109-1Foxo-GFP.Foxo-GFP-0-8_Foxo_E0-8_UofC_stnFBgn0038197CG3143foxoE0-8Foxo-GFP.Foxo-GFP-0-82451.0652173912452300.1133160.1503220.092830.19704959431411046Rep2 is dead
98
110-1Foxo-GFP.Foxo-GFP-8-16_Foxo_E8-16_UofC_stnFBgn0038197CG3143foxoE8-16Foxo-GFP.Foxo-GFP-8-161881.8613861391881010.3082950.3986790.0632260.0674122151752161380
99
111-1Hnf4-GFP.Hnf4-GFP-0-8_Hnf4_E0-8_UofC_stnFBgn0004914CG9310Hnf4E0-8Hnf4-GFP.Hnf4-GFP-0-829401.025462156286729400.0291370.0833780.0791740.06873623122910992803
100
112-1Hnf4-GFP.Hnf4-GFP-8-16_Hnf4_E8-16_UofC_stnFBgn0004914CG9310Hnf4E8-16Hnf4-GFP.Hnf4-GFP-8-16332.7533120.1786360.36545-0.059507-0.01615947232444