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1 | Collection ID | Date | Place | Coordinates | Collected by | Number of isolates | Collection characteristics | Genetic markers applied | Phenotype data | Publications | |||||||||||||||||
2 | ST_CA_89 | April, 1989 | Davis, California. Plant pathology disease nursery experimental farm. | 38.5449° N 121.7405° W | Bruce McDonald's lab | 93 | Leaves collected using transect sampling from 8 locations in a single field. 7 field locations, 19 leaves, 35 lesions, | Restriction Fragment Length Polymorphisms (RFLPs); RFLP fingerprinting with repetitive elements; Pulsed-field gel electrophoresis (PFGE) based on TAFE to generate electrophoretic karyotypes Mitochondrial genome RFLP fingerprinting Mating types Sequence loci STS2, STL10, Leu, Actin, B-tubulin | None | 1, 2, 3, 4, 12, 17, 20, 21 | |||||||||||||||||
3 | ST_OR_90A | March 6, 1990 | Corvallis, Oregon, Plant pathology disease nursery experimental farm. | 44.5646° N 123.2620° W | Bruce McDonald's lab | 154 | Random sampling of naturally infected leaves from within individual plots. 154 isolates total sampled from 154 leaves from 3 treatments, Stephens, OR8300081 (later released as the cultivar Gene), and a two-way mixture of these cultivars. | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mitochondrial genome RFLP fingerprinting Mating types Sequence loci STS2, STL10, Leu, Actin, B-tubulin | None | 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 17, 20, 21 | |||||||||||||||||
4 | ST_OR_90B | May 30, 1990 | Corvallis, Oregon, Plant pathology disease nursery experimental farm | 44.5646° N 123.2615° W | Bruce McDonald's lab | 574 | Random sampling from within naturally infected individual plots. 574 isolates total sampled from 574 leaves from 15 treatments consisting of wheat varieties Madsen, Stephens, Malcolm and OR8300081 in pure stand and in all possible 2-, 3-, and 4-way mixtures. | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mitochondrial genome RFLP fingerprinting Mating types Sequence loci STS2, STL10, Leu, Actin, B-tubulin, HPPD, STS43 CYP51 sequences Sequences of PCWDEs b-xylosidase, cellulase, polygalacturonase xylanase, cutinase Intron presence/absence polymorphisms Accessory chromosome polymorphisms Illumina genome sequences for ~60 of these isolates, 30 from Madsenand 30 from Stephens, were obtained as part of the QST population analyses. | For the 60 isolates used in theQST population analyses: Growth rates at two temperatures (thermal adaptation); virulence on two spring wheat cultivars; sensitivity to the azole fungicide cyproconazole | 4, 5, 6, 7, 8, 9, 10, 11, 12, 15, 17, 18, 20, 21, 22, 24, 25, 26, 27, 28, 30, 31, 33, 36, 38, 41, 45, 47 | |||||||||||||||||
5 | ST_OR_91 | 1991, early, middle, late-season | Corvallis, Oregon, Plant pathology disease nursery experimental farm | 44.5641° N 123.2620° W | Bruce McDonald's lab | 133 | Second year collections from replicated cultivar mixture experiment. Random sampling from within individual plots of wheat varieties Madsen, Stephens, Malcolm and OR8300081. | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mating types Sequence loci STS2, STL10, Leu, Actin, B-tubulin | None | 5, 12, 15, 17, 20, 21 | |||||||||||||||||
6 | ST_OR_92 | March 25, 1992 | Corvallis, Oregon, Plant pathology disease nursery experimental farm | 44.5651° N 123.2620° W | Bruce McDonald's lab | 58 | Third year collection from replicated cultivar mixture experiment. Random sampling from within individual plots, mostly lower leaves. Collected only from replication 1A (one block in field). | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mating types Sequence loci STS2, STL10, Leu, Actin, B-tubulin | None | 5, 12, 15, 17, 20, 21 | |||||||||||||||||
7 | ST_OR_95 | 1995, early, middle, late season | Corvallis, Oregon, Plant pathology disease nursery experimental farm | 44.5646° N 123.2625° W | Bruce McDonald's lab | 1410 | Field experiment to measure competition among 10 strains (M1-M5 and S1-S5) on resistant and susceptible varieties of wheat. Also established relative contributions of sexual and asexual reproduction and immigration into fields. | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements | None | 13, 14, 15, 16, 27 | |||||||||||||||||
8 | ST_ISR_92 | March and April 1992 | Nahal Oz, Israel | 31.4727° N 34.4977° E | Bruce McDonald's lab | 200 | Several cultivars, including Bet Hashita, Ariel, Bethlehem, Attir. Transect sampling. First evidence for origin in Fertile Crescent. | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mitochondrial genome RFLP fingerprinting Mating types Sequence loci STS2, STL10, Leu, Actin, B-tubulin, HPPD, STS43 CYP51 sequences Sequences of PCWDEs b-xylosidase, cellulase, polygalacturonase xylanase, cutinase Intron presence/absence polymorphisms Accessory chromosome polymorphisms Illumina genome sequences for 30 of these isolates were obtained as part of the QST population analyses. | For the 30 isolates used in the QST population analyses: Growth rates at two temperatures (thermal adaptation); virulence on two spring wheat cultivars; sensitivity to the azole fungicide cyproconazole | 12, 17, 18, 20, 21, 22, 23, 24, 25, 26, 28, 30, 31, 33, 34, 36, 38, 41, 45, 47 | |||||||||||||||||
9 | ST_CAN_92 | August, 1992 | Rosthern, Canada | 52.6623° N 106.3318° W | Bruce McDonald's lab | 93 | Collected from three locations in Canada (Belbutte B, Saskatoon S, Rosthern S). CNB: 3 leaves, 3 lesions, 3 isolates; CNS: 7 locations, 25 leaves, 38 lesions, 38 isolates; CNR: 8 locations, 30 leaves, 46 lesions, 52 isolates. | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mitochondrial genome RFLP fingerprinting Mating types Sequence loci STS2, STL10, Leu, Actin, B-tubulin | None | 12, 17, 20, 21 | |||||||||||||||||
10 | ST_AUSE_92 | November, 1992 | Wagga Wagga, Australia | 35.1082° S 147.3598° E | Bruce McDonald's lab | 27 | Used standard 8 site sampling strategy from single field (reference 12). 7 locations in field, 13 leaves, 18 lesions, | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mitochondrial genome RFLP fingerprinting Mating types | None | 17, 19, 23 | |||||||||||||||||
11 | ST_GER_92 | July 4, 1992 | Giessen, Germany | 50.5841° N 8.6784° E | Bruce McDonald's lab | 35 | Collected from one field in Germany using basic hierarchical sampling strategy. 8 field locations, 27 leaves, 46 lesions, 48 isolates (13 dead). | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mitochondrial genome RFLP fingerprinting Mating types Sequence loci STS2, STL10, Leu, Actin, B-tubulin CYP51 sequences mtDNA haplotypes 8 SSR loci | None | 17, 20, 21, 28, 29, 34, 35 | |||||||||||||||||
12 | ST_UK_92_93 | 1992 and 1993 | Sonning and Jealott's Hill, United Kingdom | 51.4520° N 0.7516° W | Bruce McDonald's lab | 70 | Collected from several field sites in the same area, mostly from cultivar Riband, as part of a fungicide sensitivity screen. Collected along transects in each field according to standard sampling strategy, except more locations in each field were sampled. | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mitochondrial genome RFLP fingerprinting Mating types Sequence loci STS2, STL10, Leu, Actin, B-tubulin CYP51 sequences mtDNA haplotypes 8 SSR loci | None | 17, 20, 21, 28, 29, 34, 35 | |||||||||||||||||
13 | ST_IND_93 | June 11, 1993 | Daviess County, Indiana, USA | 38.7020° N 87.1423° W | Bruce McDonald's lab | 31 | Collected from border rows of single field of cultivar Clark. Isolations were made from unordered set of leaves, numbered consecutively. 25 leaves, 30 lesions, | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mitochondrial genome RFLP fingerprinting Mating types | None | 17 | |||||||||||||||||
14 | ST_MEX_93 | November 1993 | Patzcuaro, Michoacan, Mexico | 19.5135° N 101.6092° W | Bruce McDonald's lab | 312 | Collected from many small plots in large, replicated breeder's trial. Each plot had unique number, but for convenience, isolates were grouped according to which nursery they originated from. Three leaves were sampled in each plot. 6 nurseries, 78 leaves, 165 lesions, | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mitochondrial genome RFLP fingerprinting Mating types Sequence loci STS2, STL10, Leu, Actin, B-tubulin | None | 17, 20, 21 | |||||||||||||||||
15 | ST_URU_93 | November, 1993 | Colonia, Uruguay | 34.2642° S 57.6107° W | Bruce McDonald's lab | 69 | Collected from two different varieties (Estanzuela Cardenal (E), LE 2187 (L)) in same field using recommended 8-spot hierarchical sampling scheme. E variety 14 leaves, 20 lesions, 44 isolates. L variety 9 leaves, 11 lesions, 17 isolates. | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mitochondrial genome RFLP fingerprinting Mating types Sequence loci STS2, STL10, Leu, Actin, B-tubulin | None | 17, 20, 21, 23 | |||||||||||||||||
16 | ST_CHIL_94 | December, 1994 | INIA Quilamapu Experiment Station, Chillan, Chile | 36.5963° S, 72.0877° W | Bruce McDonald's lab | 25 | Collected from one field in Chile planted to several cultivars, Quelen, Idem, Lancero. | Mating types Sequence loci STS2, Actin, B-tubulin | None | 17, 20, 21 | |||||||||||||||||
17 | ST_DEN_94 | June, 1994 | Abed Breeding Station, Sollested, Denmark | 54.8105° N, 11.2705° E | Bruce McDonald's lab | 123 | Collected from one field planted to Obelisk in Denmark. 16 locations, 98 leaves, 123 lesions, | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mitochondrial genome RFLP fingerprinting Mating types Sequence loci STS2, STL10, Leu, Actin, B-tubulin CYP51 sequences mtDNA haplotypes | None | 17, 20, 28, 29 | |||||||||||||||||
18 | ST_MO_94 | April 14, 1994 | Bradford Farm, Colombia Missouri, USA | 38.9517° N, 92.3341° W | Bruce McDonald's lab | 37 | Collected from two different varieties (Hart, M12258) in same field using recommended 8-spot hierarchical sampling scheme. 37 leaves, 37 lesions, | Mating types | None | 17 | |||||||||||||||||
19 | ST_TEX_94 | April 6, 1994 | Prosper Farm and McKinney field near Dallas, Texas | 33.2362° N, 96.8011° W | Bruce McDonald's lab | 85 | Prosper farm (P). 10 location in one field along two parallel transects. 44 leaves, 44 lesions, 52 isolates. McKinney near TI plant (M). 8 locations in one field along two parallel transects | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mitochondrial genome RFLP fingerprinting Mating types Sequence loci STS2, STL10, Leu, Actin, B-tubulin | None | 17, 18, 20, 21 | |||||||||||||||||
20 | ST_UKR_95 | June 9, 1995 | Odessa, Ukraine | 46.4825° N, 30.7233° E | Bruce McDonald's lab | 15 | 28 leaves received from one field, unordered | Mating types Sequence loci STS2, STL10, Leu, Actin, B-tubulin CYP51 sequences | None | 17, 20, 21, 28 | |||||||||||||||||
21 | ST_CH1_99 | May 28, 1999 | Lindau-Eschikon, Switzerland | 47.4497° N 8.6818° E | Bruce McDonald's lab | 61 | Collection made in farmer’s demonstration wheat field (variety Lono, moderately resistant, small lesions and hard to find) at Eschikon research station, Strickhof school farm, Switzerland. Collection was 8 site hierarchy (A-H), two parallel transects separated by 10 m, four sites along each transect separated by 10 m, 10 leaves per site (1-10), 80 leaves total. | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mitochondrial genome RFLP fingerprinting Mating types CYP51 sequences Sequence loci STS2, STL10, Leu, Actin, B-tubulin, HPPD, STS43 Sequences of PCWDEs b-xylosidase, cellulase, polygalacturonase xylanase, cutinase 8 SSR loci Intron presence/absence polymorphisms Accessory chromosome polymorphisms Electrophoretic karyotypes with pulsed field gene electrophoresis Illumina genome sequences for 30 of these isolates were obtained as part of the QST population analyses. PacBio finished genome assemblies (1A5 and 1E4) | For the 30 isolates used in the QST population analyses: Growth rates at two temperatures (thermal adaptation); virulence on two spring wheat cultivars; sensitivity to the azole fungicide cyproconazole | 17, 22, 24, 25, 26, 28, 30, 31, 33, 34, 35, 36, 38, 41, 45, 47 | |||||||||||||||||
22 | ST_CH2_99 | May 28, 1999 | Riet, Neftenbach, Switzerland | 47.5234655° N, 8.6901473° E | Bruce McDonald's lab | 60 | Collection made 28 May 1999 in farmer’s commercial wheat field (variety Galaxie, lots of disease uniformly distributed) at Riet, near Winterthur, Switzerland. Collection was 8 site hierarchy (A-H), two parallel transects separated by 10 m, four sites along each transect separated by 10 m, 10 leaves per site (1-10), 80 leaves total. B3c.2 means site B, leaf three, lesion c, isolate 2. Total number leaves: 60 | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mitochondrial genome RFLP fingerprinting Mating types | None | 17 | |||||||||||||||||
23 | ST_CH3_99 | May 28, 1999 | Berg am Irchel, Switzerland | 47.5605041° N, 8.5837702° E | Bruce McDonald's lab | 62 | Collection made 28 May 1999 in farmer’s commercial wheat field (variety Galaxie, some disease patchy distribution) at Berga Irchel, near Winterthur, Switzerland. Collection was 8 site hierarchy (A-H), two parallel transects separated by 10 m, four sites along each transect separated by 10 m, 10 leaves per site (1-10), 80 leaves total. B3c.2 means site B, leaf three, lesion c, isolate 2. Total number leaves: 62 | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mitochondrial genome RFLP fingerprinting Mating types Accessory chromosome polymorphisms Electrophoretic karyotypes with pulsed field gel electrophoresis Illumina genome sequences for 5 of these isolates PacBio finished genome assemblies (3D1 and 3D7) | For the 2 isolates used in the QTL mapping projects (3D1 and 3D7): Growth rates at two temperatures (thermal adaptation); virulence on two spring wheat cultivars; sensitivity to the azole fungicide cyproconazole | 17, 18 (CH 1), 37, 38 | |||||||||||||||||
24 | ST_CH5_99 | June 4, 1999 | Cugy, Switzerland | 46.5851° N, 6.6403° E | Bruce McDonald's lab | 42 | Collection made in commercial wheat field (unknown variety) near Cugy, canton Vaud, Switzerland. FL-3 or FL-4 leaves mainly. Zadoks code 50 (beginning of heading). Collection was 8 site hierarchy (A-H), two parallel transects separated by 10 m, four sites along each transect separated by 10 m, 10 leaves per site (1-10), 80 leaves total. | None | None | 17 (collection 4) | |||||||||||||||||
25 | ST_CH6_99 | June 4, 1999 | St. Cierges, canton Vaud, Switzerland | 46.6899° N, 6.7349° E | Bruce McDonald's lab | 70 | Collection made in commercial wheat field (variety Tamaro). Zadoks code 50 (begin heading), collections mainly from leaves FL-3/FL-4. Lots of infection, farmer had sprayed crop with fungicide 3 days before we made collection. Collection was 8 site hierarchy (A-H), two parallel transects separated by 10 m, four sites along each transect separated by 10 m, 10 leaves per site (1-10), 80 leaves total. Total number leaves: 51 | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mitochondrial genome RFLP fingerprinting Mating types | None | 17 (collection 5), 18 (CH 2) | |||||||||||||||||
26 | ST_CH7_99 | June 4, 1999 | Payerne, canton Vaud, Switzerland | 46.8220° N, 6.9406° E | Bruce McDonald's lab | 70 | Collection made in commercial wheat field (unknown variety). Mainly FL-2 leaves sampled. Uniform infection, high level of disease. Collection was 8 site hierarchy (A-H), two parallel transects separated by 10 m, four sites along each transect separated by 10 m, 10 leaves per site (1-10), 80 leaves total. | None | None | 17 (collection 6) | |||||||||||||||||
27 | ST_CH8_99 | June 4, 1999 | Hubersdorf, canton Solothurn, Switzerland | 47.2433° N, 7.5885° E | Bruce McDonald's lab | 64 | Collection made 4 June 1999 in commercial wheat field (unknown variety). Zadoks scale 59. Sampled mainly FL-4. Little infection, small lesions, field mainly free of any disease, possibly fungicide treated? Are these isolates resistant to fungicides? Collection was one long transect, leaves collected at ~1 meter intervals along border of wheel track within field. Unordered leaves. ~60 leaves total. | None | None | 17 (collection 7) | |||||||||||||||||
28 | ST_CH9_99 | June 26, 1999 | Lindau-Eschikon, Switzerland | 47.4492° N 8.6813° E | Bruce McDonald's lab | 398 | Collection made 26 June 1999 from border plots of variety Runal in Eschikon. All infection was natural, but infection was not uniformly distributed. Collection was 8 site hierarchy (A-H), one long transect around perimeter of experiment. Each stop separated by at least 10 m. 10-13 leaves per site (1-13), 80 leaves total. From some lesions, made “microtransect” to determine distribution of clones within lesions. Total number leaves: 90 | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mitochondrial genome RFLP fingerprinting Mating types Electrophoretic karyotypes with pulsed field gel electrophoresis Illumina genome sequences for 2 of these isolates | None | 17 (collection 8), 18 (CH 3), 37, 38 | |||||||||||||||||
29 | ST_AUSW_91 | Various, 1978-1991 | Nannup, Australia | 33.9820° S, 115.7650° E | Bruce McDonald's lab | 37 | “Old” Australian collection includes isolates from all over West Australia collected between 1978-1991. | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mitochondrial genome RFLP fingerprinting Mating types | None | 19, 23 | |||||||||||||||||
30 | ST_AUSE_01 | October 2, 2001 | Wagga Wagga, Australia | 35.1087° S 147.3593° E | Bruce McDonald's lab | 160 | Standard 8-site field transects, 64 leaves per field, three fields (Tank, Mascot, Pad 17 | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mating types CYP51 sequences Intron presence/absence polymorphisms Accessory chromosome polymorphisms Illumina genome sequences for 30 of these isolates were obtained as part of the QST population analyses. | For the 30 isolates used in the QST population analyses: Growth rates at two temperatures (thermal adaptation); virulence on two spring wheat cultivars; sensitivity to the azole fungicide cyproconazole | 22, 23, 24, 26, 28, 31, 33, 36, 38, 41, 45, 47 | |||||||||||||||||
31 | ST_IRAN1_01 | 2001 | Mehran, Iran | 33.1177° N, 46.1733° E | Bruce McDonald's lab | 184 | Random collection of 101 leaves | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mating types Sequence loci STS2, STL10, Leu, Actin, B-tubulin, HPPD, STS43 Sequences of PCWDEs b-xylosidase, cellulase, polygalacturonase xylanase, cutinase Complete genome sequences of two strains | None | 23, 25, 30, 32, 34, 37 | |||||||||||||||||
32 | ST_IRAN2_01 | 2001 | Dezful, Iran | 32.3831° N, 48.4236° E | Bruce McDonald's lab | 180 | Random collection of 99 leaves | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mating types | None | 23 | |||||||||||||||||
33 | ST_ARG1_98 | 1998 | Los Hornos, Argentina | 34.9539° S, 57.9747° W | Bruce McDonald's lab | 63 | Collected from same field from different varieties at three different points in time (A, B, C) during season. Fresh seed was planted into the stubble of an old field. Unordered collection of leaves from each collection point. | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mating types | None | 23 | |||||||||||||||||
34 | ST_ARG2_98 | 1998 | Balcarce, Argentina | 37.8464° S, 58.2555° W | Bruce McDonald's lab | 71 | Collected from eight different varieties in same field using recommended 9-spot hierarchical sampling scheme. Each site (A, B, etc) is a different variety. 40 leaves. | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mating types | None | 23 | |||||||||||||||||
35 | ST_ARG3_00 | 2000 | Barrow, Tres Arroyos, Argentina | 38.300° S 60.2333° W | Bruce McDonald's lab | 73 | Collected from eight different varieties in same field using recommended 7-spot hierarchical sampling scheme. Each site (A, B, etc) is a different bread wheat variety. 48 leaves, 73 lesions, | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mating types | None | 23 | |||||||||||||||||
36 | ST_ARG4_00 | 2000 | Barrow, Argentina | 38.3005° S 60.2338° W | Bruce McDonald's lab | 87 | Collected from two different durum wheat varieties in same field. Each site (1D and 2D) were different durum wheat varieties. 20 leaves, 30 lesions, | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mating types | None | 23 | |||||||||||||||||
37 | ST_ARG5_00 | 2000 | Los Hornos, Argentina | 34.9534° S, 57.9743° W | Bruce McDonald's lab | 40 | Collected from eight different varieties in same field using recommended 8-spot hierarchical sampling scheme. Each site (A, B, etc) is a different bread wheat variety, but variety names are unknown. 35 leaves, 40 lesions, | Restriction Fragment Length Polymorphisms (RFLPs) RFLP fingerprinting with repetitive elements Mating types | None | 23 | |||||||||||||||||
38 | ST_DEN1_05 | July 2005 | Ytteborg, 3 km from Hjem, Northern part of Jylland, Denmark | 56.4520° N, 9.3963° E | Bruce McDonald's lab | 10 | Random leaves from plots treated or not treated with fungicides | CYP51 sequences | None | 28 | |||||||||||||||||
39 | ST_DEN2_05 | July 2005 | Torup, Northern part of Sealand, Denmark | 55.9827° N, 11.9406° E | Bruce McDonald's lab | 21 | Random leaves from a field | CYP51 sequences | None | 28 | |||||||||||||||||
40 | ST_GERQ_05 | July 2004 | Quarnbeck, Schleswig-Holstein, Germany | 54.2194° N, 9.6961° E | Bruce McDonald's lab | 86 | From naturally infected experimental plots treated with fungicides | CYP51 sequences mtDNA haplotypes Sequences of PCWDEs b-xylosidase, cellulase, polygalacturonase xylanase, cutinase | None | 28, 29, 30 | |||||||||||||||||
41 | ST_GERD_05 | July 2004 | Dedelow, Uckermark, Germany | 53.1880° N, 13.8686° E | Bruce McDonald's lab | 82 | From naturally infected experimental plots treated with fungicides | CYP51 sequences mtDNA haplotypes | None | 28, 29 | |||||||||||||||||
42 | ST_TUN_08 | 2008 | Five field sites in Tunisia, including Menzel Bourguiba, Bousselem, Jendouba, Bejà, Mateur | 36.7333° N, 9.1844° E | Bruce McDonald's lab | 218 | Random, 1 isolate per plant, most isolates were from durum wheat | CYP51 sequences mtDNA haplotypes Mating types G143A assay in cytb gene 11 SSR loci | Sensitivity to QoI and azole fungicides | 34 | |||||||||||||||||
43 | ST_CZE_11 | 2005 - 2011 | Nine field sites in total across a wide range of agroecologies in the Czech Republic | 49.3984° N, 15.5870° E | Bruce McDonald's lab | 192 | Transect sampling in each field, 30 leaves per field, 96 isolates from 2011 collections | Mating types G143A assay in cytb gene 8 SSR loci | Sensitivity to QoI fungicides | 35 | |||||||||||||||||
44 | ST_3D1x3D7 QTL mapping cross | 2010 | Swiss strains from ST_CH3_99 population | 47.3777° N, 8.5487° E | Bruce McDonald's lab | 359 | Progeny of a cross of the two swiss strains | RADseq, ~17,000 SNPs RNA-seq datasets for parents 3D1 and 3D7 | Many quantitative traits, including melanization, growth rates at different temperatures (temperature sensitivity), fungicide sensitivity, virulence on two wheat cultivars, growth morphology | 39, 40, 42, 43, 44, 48, 49 | |||||||||||||||||
45 | ST_1A5x1E4 QTL mapping cross | 2010 | Swiss strains from ST_CH1_99 population | 47.3777° N, 8.5492° E | Bruce McDonald's lab | 341 | Progeny of a cross of the two swiss strains | RADseq, ~17,000 SNPs Electrophoretic karyotypes with PFGE RNA-seq datasets for parents 1A5 and 1E4 | Many quantitative traits, including melanization, growth rates at different temperatures (temperature sensitivity), fungicide sensitivity, virulence on two wheat cultivars, growth morphology | 38, 39, 42, 43, 44, 46, 48, 49 | |||||||||||||||||
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