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Proteomics 2019 September 9-13
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 September 9th
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Monday
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 TimeTopicSpeakerRoom
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8:00 AMCoffee and Check-inSponsored byGBSF - Lobby
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8:15 - 9:15Introduction to Proteomics WorkshopDr. Brett Phinney, UCD Genome Center Proteomics CoreGBSF - 1005
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9:45-10:15Intro to Wet Lab (break up into groups)Michelle Salemi and Dr. Anthony Herren, UCD Genome Center Proteomics CoreMeyer
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10:15 - 11:45In Solution Digestion (Group 1); S-Trap Digestion (Group 2)Michelle Salemi and Dr. Anthony Herren, UCD Genome Center Proteomics CoreMeyer
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Lunch - Tercero Dining Commons
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1:15 - 2:45In Solution Digestion (Group 2); S-Trap Digestion (Group 1)Michelle Salemi and Dr. Anthony Herren, UCD Genome Center Proteomics CoreMeyer
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2:45 - 3:00BreakSponsored byMeyer
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3:00 - 5Bovine Liver Protein Extraction, Protein Quantification, and Precipitation. Continue Digests.Michelle Salemi and Dr. Anthony Herren, UCD Genome Center Proteomics CoreMeyer
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7-9 PMVillage GrillEveryone!!Village Grill 403 G Street
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BreaksLectureLab
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Proteomics 2018 Sep 9-13th
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September 10th
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Tuesday
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 TimeTopicSpeakerRoom
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8:00 AMCoffee and breakfast Sponsored by ProteFiMeyer
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8:30 - 9:30S-trap ElutionMichelle Salemi and Dr. Anthony Herren, UCD Genome Center Proteomics CoreMeyer
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9:30 - 10:30Finish up In Solution Digestions. SPE CleanupMichelle Salemi and Dr. Anthony Herren, UCD Genome Center Proteomics CoreMeyer
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10:30-11:45Phospho-enrichmentMichelle Salemi and Dr. Anthony Herren, UCD Genome Center Proteomics CoreMeyer
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Lunch & Learn Thermo ScientificGBSF - 1005
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1:00 - 2:00Thinking Quantitatively About ProteomicsDr. David Arnott, Sr. Scientist, Protein Chemistry Dept., Genentech Inc.GBSF - 1005
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2:00 - 3:00Intro to Mass specDr. Gabriela Girgorean , UCD Genome Center Proteomics CoreGBSF - 1005
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3:00- 3:45Group 1 LC-MS lab; Group 2 LCMS LectureUC Davis Proteomics Core TeamGBSF -1414
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3:45-4:30Group 2 LC-MS Lab; Group 1 LCMS LectureUC Davis Proteomics Core TeamGBSF -1414
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4:30-4:45BreakSponsored byGBSF - 1005
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4:45-5:30
Dr. Birgit Schilling, Research Associate Professor & the Director of the Mass Spectrometry & Chemistry Core at Buck Institute for Research on AgingGBSF - 1005
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Approx 5:30 pmAdjourn
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My Proteomic Notes:
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 LectureLab
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Proteomics 2018 Sep 9-13th
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 September 11th
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Wednesday
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 TimeTopicSpeakerRoom
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8:00 AMCoffeeSponsored by EvosepSLB - 2061
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8:30-10:00Protein ID & Looking at and Converting Raw DataDr. Brett Phinney, UCD Genome Center Proteomics CoreSLB - 2060
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10 - 10:15Short breakSponsored by RaininSLB - 2061
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10:15-11:00Looking at and Converting Raw Data Part 2 and Data dependant AnalysisDr. Brett Phinney, UCD Genome Center Proteomics CoreSLB - 2060
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11:00-12:00Protein Identification Lab Part 1Dr. Gabriela Girgorean , UCD Genome Center Proteomics CoreSLB - 2060
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Lunch Sponsored by Sciex
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1:00-2:00InformaticsThe Highs and Lows in Proteomic Analysis Dr. David Qulici Uunviersity of Nevada RenoSLB - 2060
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2:00-3:00Lecture TBDBennett Penn, UC DavisSLB - 2060
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3:00 - 3:15BreakSponsored by EvosepSLB - 2061
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3:15-4:15Protein ID Lab (part 2)Dr. Gabriela Girgorean , UCD Genome Center Proteomics CoreSLB - 2060
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4:15 - 5:15Proteomic Data Analysis DIADr. Brett Phinney, UCD Genome Center Proteomics CoreSLB - 2060
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5:15Adjourn
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My Proteomic Notes:
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 LectureComputer Lab
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 Proteomics 2018 Sep 9-13th
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September 12th
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Thursday
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 TimeTopicSpeakerRoom
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8:00 - 9:45Protein ID and Spectral Counting Exercise Using MaxquantDr. Brett Phinney, UCD Genome Center Proteomics CoreSLB - 2060
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9:45 - 10:00BreakSponsored by Proteome SoftwareSLB - 2061
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10:00 - 11:00Introduction to Protein Quantitation and Advanced Quantitation LabDr. Brett Phinney, UCD Genome Center Proteomics CoreSLB - 2060
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11:00 - 12:00Data Independant analysis of Atrtic Fishes Dr Dietmar Kueltz, UC DavisSLB - 2060
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Lunch Sponsored by Biognosysgrove (surge III)
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1:00-2:00Lecture Bob RiceDr. Bob Rice UCDSLB - 2060
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2:00- 3:00DIA data Analysis LabDr. Brett Phinney, UCD Genome Center Proteomics CoreSLB - 2020
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3:00-3:15BreakSponsored by ProteomeSoftwareSLB - 2061
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3:15-5:00De novo Sequencing & more computer lab!!Michelle Salemi, UC Davis Genome Center Proteomics CoreSLB - 2060
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5:00Adjourn
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My Proteomic Notes:
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 LectureComputer Lab
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Proteomics 2018 Sep 10-14th
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September 13th
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Friday
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 TimeTopicSpeakerRoom
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9:00-10Lecture TMTDr. Aldrin Gomes, UCDSLB - 2060
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10:00-10:15BreakSponsored by Bruker
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10:15-10:45De novo Quiz Results and QuestionsMichelle Salemi, UC Davis Genome Center Proteomics CoreSLB-2060
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10:45-11:45InformaticsDr. Ryan Leib, Staff Scientist- Protein Bioinformatics, Stanford University Mass SpectrometrySLB - 2060
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Lunch Sponsored by Bruker
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1:00-2:45Phospho Enrichment and PTM Computer LabDr. Anthony Herren, UCDSLB - 2060
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2:45-3:00BreakSponsored by BrukerSLB - 2061
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3:00-4:00Statistical Concepts Relevant to Proteomics Data AnalysisDr. Blythe Durbin-Johnson, UC Davis Principal StatisticianSLB - 2060
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4:00-4:45Data Analysis Wrap up in Computer LabDr. Brett Phinney, UCD Genome Center Proteomics CoreSLB - 2060
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4:00:-5:00Final Remarks and CertificatesDr. Brett Phinney, UCD Proteomics Facility