2019 - MRM - Open Source keyword results
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FilenameMonthNeuroLibre?False positive?LinkShared code?Shared data?Shared Scripts?Language(s)
Additional notes
"open source""open-source""opensource""open science""github""git""osf""jupyter""notebook""octave"
"available online"
"released""shared""code"
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mrm.2019.81.0025.pdfJanuaryNOTRUETRUE
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mrm.2019.81.0057.pdfJanuaryNOTRUETRUE
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mrm.2019.81.0090.pdfJanuaryNOTRUETRUETRUE
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mrm.2019.81.0116.pdfJanuaryMAYBEFALSE
https://github.com/VLOGroup/mri-variationalnetwork
TRUETRUEFALSEPython
Main repo from another paper, doesn't appear that the stuff for this paper has been uploaded yet.
TRUE
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mrm.2019.81.0140.pdfJanuaryNOTRUETRUETRUE
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mrm.2019.81.0220.pdfJanuaryNOTRUETRUE
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mrm.2019.81.0247.pdfJanuaryNOTRUETRUE
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mrm.2019.81.0362.pdfJanuaryMAYBEFALSE
https://github.com/mriphysics/verse-mb
TRUETRUETRUEMATLABOnly examplesTRUETRUE
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mrm.2019.81.0377.pdfJanuaryNOTRUETRUE
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mrm.2019.81.0439.pdfJanuaryNOTRUETRUETRUE
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mrm.2019.81.0454.pdfJanuaryNOTRUETRUE
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mrm.2019.81.0495.pdfJanuaryNOFALSETRUE
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mrm.2019.81.0504.pdfJanuaryNOTRUETRUETRUE
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mrm.2019.81.0524.pdfJanuaryNOFALSETRUE
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mrm.2019.81.0602.pdfJanuaryNOTRUETRUE
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mrm.2019.81.0645.pdfJanuaryNOTRUETRUE
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mrm.2019.81.0781.pdfFebruaryNOTRUETRUE
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mrm.2019.81.0811.pdfFebruaryNOFALSETRUE
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mrm.2019.81.0839.pdfFebruaryNOTRUETRUE
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mrm.2019.81.0881.pdfFebruaryMAYBEFALSE
https://github.com/IMTtugraz/BSReconFramework
PARTIALFALSEFALSEMATLAB
They only shared part of the code used for this project, from another publication
TRUETRUE
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mrm.2019.81.0907.pdfFebruaryMAYBEFALSE
https://github.com/mriphysics
NOT YETNOT YETNOT YETMATLAB, C++
Authors said in paper that code will be uploaded as MRTrix addon to their github org, but never did so as of today
TRUE
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mrm.2019.81.0947.pdfFebruaryMAYBEFALSE
https://kclcvmimaging.wordpress.com/downloads/
NOT ANYMORENOT ANYMORENOT ANYMOREMATLAB
Private site, marked as private by authors. No longer accessible
TRUE
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mrm.2019.81.0989.pdfFebruaryMAYBEFALSE
https://github.com/opennog/ODGD
PARTIALFALSEFALSEMATLAB
They only shared part of the code used for this project, from another publication
TRUETRUE
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mrm.2019.81.1052.pdfFebruaryNOTRUETRUE
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mrm.2019.81.1143.pdfFebruaryNOTRUETRUE
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mrm.2019.81.1205.pdfFebruaryNOTRUETRUE
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mrm.2019.81.1219.pdfFebruaryNOTRUETRUE
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mrm.2019.81.1247.pdfFebruaryNOFALSETRUETRUE
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mrm.2019.81.1296.pdfFebruaryNOTRUETRUE
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mrm.2019.81.1307.pdfFebruaryMAYBEFALSE
https://github.com/rispoli-lab/Bilateral-Breast-Fusion-
TRUETRUETRUEMATLABOnly examples.TRUETRUETRUE
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mrm.2019.81.1353.pdfFebruaryMAYBEFALSE
http://www.lpi.tel.uva.es/3dgrappa
TRUETRUETRUEMATLAB
Looks like they provide everything needed to reproduce.
TRUETRUE
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mrm.2019.81.1412.pdfFebruaryNOTRUETRUE
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mrm.2019.81.1434.pdfFebruaryNOTRUETRUE
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mrm.2019.81.1486.pdfMarchNOTRUETRUE
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mrm.2019.81.1595.pdfMarchNOTRUETRUE
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mrm.2019.81.1620.pdfMarchNOTRUETRUE
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mrm.2019.81.1634.pdfMarchNOTRUETRUE
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mrm.2019.81.1685.pdfMarchNOTRUETRUE
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mrm.2019.81.1699.pdfMarchNOTRUETRUE
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mrm.2019.81.1739.pdfMarchMAYBEFALSE
https://github.com/maxdiefenbach/trabecular_bone_QSM
TRUETRUETRUEMATLAB, C++, C
Looks like they provide everything needed to reproduce.
TRUETRUETRUE
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mrm.2019.81.1795.pdfMarchNOTRUETRUE
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mrm.2019.81.1818.pdfMarchNOFALSETRUE
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mrm.2019.81.1849.pdfMarchNOTRUETRUE
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mrm.2019.81.1863.pdfMarchMAYBEFALSE
https://github.com/SeiberlichLab/Abdominal_MR_Phantom
TRUEFALSETRUEMATLAB
Only examples, but includes their simulated phantom in another repo.
TRUETRUE
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mrm.2019.81.1890.pdfMarchNOTRUETRUE
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mrm.2019.81.1898.pdfMarchLIKELYFALSE
https://github.com/mrirecon/RING
TRUETRUETRUESHELL, Python
Looks like it contains everything needed to reproduce all figures.
TRUETRUE
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mrm.2019.81.1907.pdfMarchNOTRUETRUE
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mrm.2019.81.1924.pdfMarchMAYBEFALSE
https://github.com/mylyu/SMS-EPI-Ghost-Correction
FALSEFALSEFALSEMATLAB
Authors promised to upload the code and data to their repo after publication, but never did.
TRUE
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mrm.2019.81.2001.pdfMarchMAYBEFALSE
https://github.com/nicholas-zhu/HP_C13_project.git
TRUEFALSEFALSEMATLAB, CMATLAB, CTRUETRUE
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mrm.2019.81.2011.pdfMarchNOTRUETRUE
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mrm.2019.81.2025.pdfMarchMAYBEFALSE
http://www.mri-resource.kennedykrieger.org/software
TRUETRUEFALSEMATLABJust examplesTRUE
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mrm.2019.81.2052.pdfMarchNOTRUETRUE
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mrm.2019.81.2064.pdfMarchMAYBEFALSE
http://github.com/davidssmith/TRON
TRUETRUETRUEMATLAB, CudaJust examplesTRUETRUETRUE
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mrm.2019.81.2072.pdfMarchMAYBEFALSE
https://github.com/IMTtugraz/PyQMRI
TRUETRUEFALSEPython, CJust examplesTRUETRUETRUETRUE
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mrm.2019.81.2090.pdfMarchMAYBEFALSE
https://figshare.com/s/f2e47b41e974ab67039b
TRUETRUETRUEMIPAV plugin
Might contain all that's needed.
TRUETRUE
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mrm.2019.81.2120.pdfMarchNOTRUETRUETRUE
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mrm.2019.81.2135.pdfMarchMAYBEFALSE
http://www.imaging.robarts.ca/parraga/technology_codes.html
TRUEFALSEFALSEMATLAB, Cuda
Link is broken in paper, because it uses https. Remove the z and it'll work
TRUE
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mrm.2019.81.2167.pdfMarchNOTRUETRUETRUE
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mrm.2019.81.2209.pdf AprilMAYBEFALSE
http://innovation.columbia.edu/technologies/CU18146_optimized%E2%80%90magnetic%E2%80%90resonance
FALSEFALSEFALSEMATLAB
Link sends to a blank page.
TRUE
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mrm.2019.81.2288.pdfAprilMAYBEFALSE
http://www.qbi-lab.org/software.php
FALSEFALSEFALSEMATLAB
Link send to their personal page, does not contain software. Other softwares are only available by emailing authors
TRUE
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mrm.2019.81.2302.pdfAprilNOTRUETRUE
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mrm.2019.81.2360.pdfAprilNOTRUETRUE
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mrm.2019.81.2374.pdfAprilMAYBEFALSE
https://github.com/ygaogithub/DP-MS-Simulation
TRUEFALSETRUEMATLAB
Only simulation section of paper available.
TRUETRUE
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mrm.2019.81.2385.pdfAprilMAYBEFALSE
https://github.com/poormanme/waterFatSeparated_MRThermometry
TRUEFALSETRUEMATLAB
Algorithm and example, no in vivo
TRUETRUE
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mrm.2019.81.2412.pdf AprilMAYBEFALSEwww.cest-sources.orgTRUEFALSEFALSEMATLAB
Link doesn't make it explicit which software was used for this paper.
TRUETRUE
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mrm.2019.81.2424.pdfAprilMAYBEFALSE
https://github.com/OSU-CMR-AP/ARTO_Example
TRUETRUETRUEMATLAB
Only example scripts/data
TRUE
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mrm.2019.81.2439.pdfAprilNOTRUETRUE
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mrm.2019.81.2474.pdfAprilNOTRUETRUE
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mrm.2019.81.2536.pdfAprilNOTRUETRUE
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mrm.2019.81.2576.pdfAprilMAYBEFALSE
https://github.com/srapacchi/SMSCINE
TRUETRUEFALSEMATLAB
Sample dataset, used Gadgetron.
TRUETRUE
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mrm.2019.81.2588.pdfAprilNOFALSETRUE
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mrm.2019.81.2632.pdf AprilNOFALSETRUETRUE
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mrm.2019.81.2644.pdfAprilNOTRUETRUE
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mrm.2019.81.2655.pdfAprilNOTRUETRUE
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mrm.2019.81.2688.pdfAprilNOFALSETRUE
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mrm.2019.81.2702.pdfAprilNOFALSETRUE
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mrm.2019.81.2728.pdfAprilNOTRUETRUE
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mrm.2019.81.2736.pdfAprilMAYBEFALSE
https://github.com/tarolangner/fcn_vatsat
TRUEFALSEFALSEPython
Trained model, but doesn't contain virtual environment or docker files, so will likely become stale.
TRUE
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mrm.2019.81.2808.pdfAprilNOTRUETRUE
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mrm.2019.81.2841.pdfMayMAYBEFALSE
https://www.cibm.ch/cms/lang/fr/pid/60486
FALSEFALSEFALSE MATLABBroken linkTRUE
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mrm.2019.81.2869.pdfMayNOTRUETRUE
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mrm.2019.81.2878.pdfMayLIKELYFALSE
https://github.com/martin3141/rats
TRUETRUETRUER
Script reproduces paper results
TRUETRUE
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mrm.2019.81.2896.pdfMayNOTRUETRUE
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mrm.2019.81.2972.pdfMayNOTRUETRUE
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mrm.2019.81.2995.pdfMayNOTRUETRUE
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mrm.2019.81.3007.pdfMayNOTRUETRUE
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mrm.2019.81.3153.pdfMayNOTRUETRUE
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mrm.2019.81.3192.pdfMayMAYBEFALSE
https://github.com/chongduan/HYTOM
TRUEFALSETRUEMATLAB
Simulation only, so reproduces simulation figures.
TRUETRUE
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mrm.2019.81.3218.pdfMayNOTRUETRUE
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mrm.2019.81.3234.pdfMayNOTRUETRUE
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mrm.2019.81.3245.pdfMayNOTRUETRUE
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mrm.2019.81.3283.pdfMayNOFALSETRUE
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mrm.2019.81.3293.pdfMayMAYBEFALSE
https://github.com/GSDrenthen/Non-Negative-OMP/blob/master/NonNeg_OMP.m
TRUEFALSEFALSEMATLAB
Only a short algorithm file.
TRUE
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mrm.2019.81.3314.pdfMayNOTRUETRUE
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mrm.2019.81.3330.pdfMayNOFALSETRUETRUETRUE
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mrm.2019.81.3379.pdfMayNOFALSETRUE
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mrm.2019.81.3406.pdfMayNOTRUETRUE
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mrm.2019.81.3427.pdfJuneNOTRUETRUE
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mrm.2019.81.3488.pdfJuneNOTRUETRUE
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