ABCDEFGHIJKLMNOPQRSTUVWXYZAAABACAD
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DiseasePatientSampleData TypeMGI work orderStatusMGH Data Location (filtered_feature_bc_matrix)WashU Data locationSeurat Object (scrublet + CONICSmat)Seurat Object (minimal QC)
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glioma, IDH mutantB148scRNA-seq (10X 3')/storage1/fs1/allegra.petti/Active/GBM/KimCollab2019/scrna/SAMPLES/GBM1_total_3p_GEX_CR3/outs/filtered_feature_bc_matrix
/rdcw/fs1/allegra.petti/Active/GBM/KimCollab2019/scrna/SAMPLES/GBM1_total_3p_GEX_CR3/seurat/B148.CONICS/B148.conics.rds
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GBMB150scRNA-seq (10X 3')/storage1/fs1/allegra.petti/Active/GBM/KimCollab2019/scrna/SAMPLES/GBM2_total_3p_GEX_CR3/outs/filtered_feature_bc_matrix
/rdcw/fs1/allegra.petti/Active/GBM/KimCollab2019/scrna/SAMPLES/GBM2_total_3p_GEX_CR3/seurat/B150.CONICS/B150.conics.rds
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GBMB152scRNA-seq (10X 3')/storage1/fs1/allegra.petti/Active/GBM/KimCollab2019/scrna/SAMPLES/GBM3_total_3p_GEX_CR3/outs/filtered_feature_bc_matrix"
/rdcw/fs1/allegra.petti/Active/GBM/KimCollab2019/scrna/SAMPLES/GBM3_total_3p_GEX_CR3/seurat/B152.CONICS/B152.conics.rds
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GBMB172B172-01Spatial (Fresh Frozen)Processed (Spaceranger 1.0)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/spatial/SAMPLES/TWBK-B172-01
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GBMB172B172-02Spatial (Fresh Frozen)Processed (Spaceranger 1.0)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/spatial/SAMPLES/TWBK-B172-02
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High-grade astrocytoma with piloid features
B174B174-01Spatial (Fresh Frozen)Processed (Spaceranger 1.0)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/spatial/SAMPLES/TWBK-B174-01
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glioma, IDH mutantB175B175-01Spatial (Fresh Frozen)Processed (Spaceranger 1.0)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/spatial/SAMPLES/TWBK-B175-01
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GBMB176B176-01-02Spatial (Fresh Frozen)Processed (Spaceranger 1.0)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/spatial/SAMPLES/TWBK-B176-01-02
10
GBMB176B176-02-01Spatial (Fresh Frozen)Processed (Spaceranger 1.0)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/spatial/SAMPLES/TWBK-B176-02-01
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GBMB176B176-02-04Spatial (Fresh Frozen)Processed (Spaceranger 1.0)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/spatial/SAMPLES/TWBK-B176-02-04
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GBMB178B178-02-01Spatial (Fresh Frozen)Processed (Spaceranger 1.0)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/spatial/SAMPLES/TWBK-B178-02-01
13
GBMB172B172-02snRNA-seq (10x 5' V1.1)Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/snrnaseq/SAMPLES.B172-02_snRNA_seq
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GBMB174B174-01snRNA-seq (10x 5' V1.1)Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/snrnaseq/SAMPLES.B174-01_snRNA_seq
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GBMB175B175-01snRNA-seq (10x 5' V1.1)Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/snrnaseq/SAMPLES.B175_01_5p_snrna
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GBMB176B176-01-02snRNA-seq (10x 5' V1.1)Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/snrnaseq/SAMPLES.B176_01
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GBMB176B176-02-01snRNA-seq (10x 5' V1.1)Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/snrnaseq/SAMPLES.B176_02
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GBMB178B178-02-01snRNA-seq (10x 5' V1.1)Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/snrnaseq/SAMPLES.B178_02
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GBMB172B172-01Exome (100x)NovogeneGMS processing profile:
/storage1/fs1/allegra.petti/Active/gmsroot/model_data/ab5c19d24ce443b6a14fb8f66e0f6e97/buildb10452a8ddfc4a61a07ac45b55f58c79/results/
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GBMB174B174-01Exome (100x)NovogeneGMS processing profile:
/storage1/fs1/allegra.petti/Active/gmsroot/model_data/a016e6d10d5348d4a47ce87ba97585ee/build50f992d4b16642b093b45d905ef70d4a/results/
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GBMB175B175-01Exome (100x)NovogeneGMS processing profile:
/storage1/fs1/allegra.petti/Active/gmsroot/model_data/8f5930942fc84218a1040490e6cf3c06/builde8b84fb7457c4f12a69a26cabd2967e9/results/
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GBMB176B176-02-04Exome (100x)NovogeneGMS processing profile:
/storage1/fs1/allegra.petti/Active/gmsroot/model_data/21f57639244542929fdd5cef856cc2b3/build1d5ff784f4ca4038a90252812f108fdc/results/
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GBMB178B178-02-01Exome (100x)NovogeneGMS processing profile:
/storage1/fs1/allegra.petti/Active/gmsroot/model_data/87d776be6ba14411bb18ccc8ffa6e415/build7ce0c5488de94ebe9ef0774c15aad8e6/results/
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GBMB178B178-01 (fresh)scRNA-seq (10x 5' V1.1)Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/Users/Desai/scRNA_Optimization_1/Cellranger5/B178_1_count_cellranger5
/rdcw/fs1/allegra.petti/Active/Users/Desai/scRNA_Optimization_1/Cellranger5/B178_1_count_cellranger5/B178.CONICS/B178.conics.rds
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GBMB178B178-02 (DMSO)scRNA-seq (10x 5' V1.1)Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/Desai/scRNA_Optimization_1/Cellranger5/B178_2_count_cellranger5
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GBMB178B178-03 (Living Biopsy)scRNA-seq (10x 5' V1.1)Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/Desai/scRNA_Optimization_1/Cellranger5/B178_3_count_cellranger5
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GBMB183B183-01 (fresh)scRNA-seq (10x 5' V1.1)2863953Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/Desai/scRNA_Optimization_1/Cellranger5/B183_1_count_cellranger5
/rdcw/fs1/allegra.petti/Active/Users/Desai/scRNA_Optimization_1/Cellranger5/B183_1_count_cellranger5/B183.CONICS/B183.conics.rds
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GBMB183B183-02 (DMSO)scRNA-seq (10x 5' V1.1)2863953Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/Desai/scRNA_Optimization_1/Cellranger5/B183_2_count_cellranger5
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GBMB183B183-03 (Living Biopsy)scRNA-seq (10x 5' V1.1)2863953Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/Desai/scRNA_Optimization_1/Cellranger5/B183_3_count_cellranger5
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GBMB178B178-01 (fresh)scRNA-seq (10x 5' V1.1)Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/scrnaseq/SAMPLES/B178_1
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GBMB178B178-02 (DMSO)scRNA-seq (10x 5' V1.1)Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/scrnaseq/SAMPLES/B178_2/
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GBMB178B178-03 (Living Biopsy)scRNA-seq (10x 5' V1.1)Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/scrnaseq/SAMPLES/B178_3/
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GBMB183B183-01 (fresh)scRNA-seq (10x 5' V1.1)2863953Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/scrnaseq/SAMPLES/B183_1
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GBMB183B183-02 (DMSO)scRNA-seq (10x 5' V1.1)2863953Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/scrnaseq/SAMPLES/B183_2/
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GBMB183B183-03 (Living Biopsy)scRNA-seq (10x 5' V1.1)2863953Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/scrnaseq/SAMPLES/B183_3/
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GBMB185185-01 tumor core areaSpatial (Fresh Frozen)2863929Processed (Spaceranger 1.0)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/spatial/SAMPLES/TWBK-B185-01
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GBMB185185-02 tumor intermediate area 1Spatial (Fresh Frozen)2863929Processed (Spaceranger 1.0)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/spatial/SAMPLES/TWBK-B185-02
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GBMB185185-03 tumor intermediate area 2Spatial (Fresh Frozen)2863929Processed (Spaceranger 1.0)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/spatial/SAMPLES/TWBK-B185-03
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GBMB185185-04 tumor edge areaSpatial (Fresh Frozen)2863929Processed (Spaceranger 1.0)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/spatial/SAMPLES/TWBK-B185-04
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GBMB185B185-01 (5ALA+)scRNA-seq (10x 5' V1.1)2863952Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/Desai/B185_5ALA_sort/Cellranger5/B185_1_count/cellranger5
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GBMB185B185-02 (5ALA-)scRNA-seq (10x 5' V1.1)2863952Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/Desai/B185_5ALA_sort/Cellranger5/B185_2_count/cellranger5
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GBMB185B185-03 (unsorted)scRNA-seq (10x 5' V1.1)2863952Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/Desai/B185_5ALA_sort/Cellranger5/B185_3_count_cellranger5/
/rdcw/fs1/allegra.petti/Active/Users/Desai/B185_5ALA_sort/Cellranger5/B185_3_count_cellranger5/B185.CONICS/B185.conics.rds
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GBMB186186-01 (B186 5ALA Core)Spatial (Fresh Frozen)2864077Processed (Spaceranger 1.0)/rdcw/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/spatial/SAMPLES/TWBK-B186-01
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GBMB186186-02 (B186 5ALA intermediate 1)Spatial (Fresh Frozen)2864077Processed (Spaceranger 1.0)/rdcw/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/spatial/SAMPLES/TWBK-B186-02
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GBMB186186-03 (B186 5ALA intermediate 2)Spatial (Fresh Frozen)2864077Processed (Spaceranger 1.0)/rdcw/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/spatial/SAMPLES/TWBK-B186-03
46
GBMB186186-04 (B186 5ALA Edge)Spatial (Fresh Frozen)2864077Processed (Spaceranger 1.0)/rdcw/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/spatial/SAMPLES/TWBK-B186-04
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GBMB186B186scRNA-seq (10x 5' V1.1)Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/scrnaseq/SAMPLES/B186
/rdcw/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/scrnaseq/SAMPLES/B186/B186.CONICS/B186.conics.rds
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GBMB189*B189? called ST073021 since unclearscRNA-seq (10x 5' V2)Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/Users/Desai/Spatial/ST073021
/rdcw/fs1/allegra.petti/Active/Users/Desai/ST073021/B189_count_cellranger5/B189.CONICS/B189.conics.rds
49
Grade 3 Oligodendroglioma
WU-1200
Core_CD45pos (Grade 3 Oligodendroglioma)
scRNA-seq (10x 5' V2)2865037Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/GBM/scEdgeCore/SAMPLES/WU-1200/WU-1200-Core_CD45pos
/rdcw/fs1/allegra.petti/Active/GBM/scEdgeCore/SAMPLES/WU-1200/WU1200.Core.CONICS/WU1200.conics.rds
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Grade 3 Oligodendroglioma
WU-1200
Core_CD45neg (Grade 3 Oligodendroglioma)
scRNA-seq (10x 5' V2)2865037Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/GBM/scEdgeCore/SAMPLES/WU-1200/WU-1200-Core_CD45neg
/rdcw/fs1/allegra.petti/Active/GBM/scEdgeCore/SAMPLES/WU-1200/WU1200.Core.CONICS/WU1200.conics.rds
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Grade 3 Oligodendroglioma
WU-1200
Edge_CD45pos (Grade 3 Oligodendroglioma)
scRNA-seq (10x 5' V2)2865037Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/GBM/scEdgeCore/SAMPLES/WU-1200/WU-1200-Edge_CD45pos
52
Grade 3 Oligodendroglioma
WU-1200
Edge_CD45neg (Grade 3 Oligodendroglioma)
scRNA-seq (10x 5' V2)2865037Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/GBM/scEdgeCore/SAMPLES/WU-1200/WU-1200-Edge_CD45neg
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Grade 3 Oligodendroglioma
WU-1200
Core_CD45pos (Grade 3 Oligodendroglioma)
10x_SC_5'_V2_Enriched_Tcell2865037Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/GBM/scEdgeCore/SAMPLES/WU-1200/WU-1200-Core_CD45pos_vdj
54
Grade 3 Oligodendroglioma
WU-1200
Edge_CD45pos (Grade 3 Oligodendroglioma)
10x_SC_5'_V2_Enriched_Tcell2865037Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/GBM/scEdgeCore/SAMPLES/WU-1200/WU-1200-Edge_CD45pos_vdj
55
GBMTWBK-ST073021/B189
TWBK-ST073021-2 (aka B189) Edge
Spatial (FFPE)Processed (Spaceranger 1.3.0)/rdcw/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/spatial/SAMPLES/TWBK-ST073021-2
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GBMTWBK-ST073021/B189
TWBK-ST073021-4 (aka B189) Core
Spatial (FFPE)Processed (Spaceranger 1.3.0)/rdcw/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/spatial/SAMPLES/TWBK-ST073021-4
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GBMTWBK-ST073021/B189
TWBK-ST073021-6 (aka B189) Core
Spatial (FFPE)Processed (Spaceranger 1.3.0)/rdcw/fs1/allegra.petti/Active/spatial_snRNAseq_gbm/spatial/SAMPLES/TWBK-ST073021-6
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GBM with focal gliosarcocoma
?????
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GBMWU-1225WU-1225 corescRNA-seq (10x 5' V2)Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/GBM/scEdgeCore/SAMPLES/WU-1225/WU-1225-core
60
GBMWU-1225WU-1225 edgescRNA-seq (10x 5' V2)Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/GBM/scEdgeCore/SAMPLES/WU-1225/WU-1225-edge
61
GBMWU-1226WU-1226 core CD45negscRNA-seq (10x 5' V2)Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/GBM/scEdgeCore/SAMPLES/WU-1226/WU-1226-coreCD45neg
62
GBMWU-1226WU-1226 edge CD45 negscRNA-seq (10x 5' V2)Processed (Cellranger 5.0.1)/storage1/fs1/allegra.petti/Active/GBM/scEdgeCore/SAMPLES/WU-1226/WU-1226-edgeCD45neg
63
GBMGBM016GBM016_Core_CD45NscRNA-seq (10x 5' V2)Processed (Cellranger 5.0.1)/n/data1/mgh/neuro/petti/lab/data/human/scrna/SAMPLES/GBM016_Core_CD45N_cellranger
64
GBMGBM016GBM016_Core_CD45PscRNA-seq (10x 5' V2)Processed (Cellranger 5.0.1)/n/data1/mgh/neuro/petti/lab/data/human/scrna/SAMPLES/GBM016_Core_CD45P_cellranger
65
GBMGBM016GBM016_EdgescRNA-seq (10x 5' V2)Processed (Cellranger 5.0.1)/n/data1/mgh/neuro/petti/lab/data/human/scrna/SAMPLES/GBM016_Edge_cellranger
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