ABCDEFGHIJKLMNOPQRSTUVWXYZ
1
2
Relationships between annotation and flatfile for "protein-coding (General)" entry
3
Output: DDBJ flat file
4
Input: Annotation file
5
6
LOCUS ######## 12297 bp DNA linearr ROD 30-SEP-2025
7
DEFINITION Mus musculus tbpB and tbpA genes for protein kinase and TATA-box
8
EntryFeatureLocationQualifierValue binding protein, partial and complete cds
9
COMMONSUBMITTERcontactHanako MishimaACCESSION ########
10
ab_nameMishima,H.VERSION ########.1
11
ab_nameYamada,T.KEYWORD .
12
ab_namePark,C.S.SOURCE Mus musculus (house mouse)
13
ab_nameLiu,G.Q. ORGANISM Mus musculus
14
instituteNational Institute of Genetics Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
15
departmentDNA Data Bank of Japan Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus.
16
geo_loc_nameJapanREFERENCE 1 (bases 1 to 12297)
17
stateShizuoka AUTHORS Mishima,H., Yamada,T., Park,C.S. and Lin,G.Q.
18
cityMishima TITLE Direct Submission
19
streetYata 1111 JOURNAL Submitted (dd-mmm-yyyy)
20
zip411-8540 Contact:Hanaka Mishima
21
urlhttps://www.ddbj.nig.ac.jp/ National Institute of Genetics, DNA Data Bank of Japan; Yata 1111,
22
emailmishima@ddbj.nig.ac.jp Mishima, Shizuoka 411-8540, Japan
23
REFERENCEtitleSequence and analysis of mouse chromosom 8 URL :https://www.ddbj.nig.ac.jp/
24
ab_nameMishima,H.REFERENCE 2
25
ab_nameYamada,T. AUTHORS Mishima,H., Yamada,T., Park,C.S. and Lin,G.Q.
26
ab_namePark,C.S. TITLE Sequence and analysis of mouse chromosome 8
27
ab_nameLiu,G.Q. JOURNAL Unpublished
28
year2024COMMENT Please visit our web site
29
statusUnpublished URL:https://www.ddbj.nig.ac.jp/
30
COMMENTlinePlease visit our web siteFEATURES Location/Qualifiers
31
lineURL:https://www.ddbj.nig.ac.jp/ source 1..12297
32
CLN01source1..EorganismMus musculus /chromosome="8"
33
mol_typegenomic DNA /clone="PC0110"
34
chromosome8 /mol_type="genomic DNA"
35
clonePC0110 /organism="Mus musculus"
36
CDSjoin(<1..456,609..879,1070..1213)genetbpB CDS join(<1..456,609..879,1070..1213)
37
productprotein kinase /codon_start=2
38
codon_start2 /gene="tbpB"
39
CDScomplement(join(3213..4981,9901..11677))genetbpA /product="protein kinase"
40
productTATA-box binding protein /protein_id="########.1"
41
 /translation="<The amino acid sequence is omitted>"
42
 CDS complement(join(3213..4981,9901..11677))
43
 /codon_start=1
44
 /gene="tbpA"
45
 /product="TATA-box binding protein"
46
 /protein_id="########.1"
47
 /translation="<The amino acid sequence is omitted>"
48
<The lines for BASE COUNT, ORIGIN, and nucleotide sequence are omitted>
49
//
50
51
52
53
54
Relationships between annotation and flatfile for "WGS (Whole Genome Shotgun)" entry
55
56
COMMONDBLINKprojectPRJDB90001
57
biosampleSAMD90000000LOCUS ######## 30584173 bp DNA linearr ROD 30-SEP-2025
58
sequence read archive
DRR99999900DEFINITION Mus musculus msmd-1 chromosme 1, chr1_assembly.
59
sequence read archive
DRR99999901VERSION ########.1
60
SUBMITTERcontactHanako MishimaDBLINK BioProject:PRJDB7578
61
consrtmMus musculus genome sequencing consortium Sequence Read Archive:DRR99999900,DRR99999901
62
ab_nameMishima,H. BioSample:SAMD00570813
63
ab_nameYamada,T.KEYWORD .
64
ab_namePark,C.S.SOURCE Mus musculus (house mouse)
65
ab_nameLiu,G.Q. ORGANISM Mus musculus
66
emailmishima@ddbj.nig.ac.jp Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
67
instituteNational Institute of Genetics Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus.
68
departmentDNA Data Bank of JapanREFERENCE 1 (bases 1 to 30584173)
69
countryJapan AUTHORS Mishima,H., Yamada,T., Park,C.S. and Lin,G.Q.
70
stateShizuoka TITLE Direct Submission
71
cityMishima JOURNAL Submitted (dd-mmm-yyyy)
72
streetYata 1111 Contact:Hanaka Mishima
73
REFERENCEab_nameMishima,H. National Institute of Genetics, DNA Data Bank of Japan; Yata 1111,
74
ab_nameYamada,T. Mishima, Shizuoka 411-8540, Japan
75
ab_nameKim,K.-H. URL :https://www.ddbj.nig.ac.jp/
76
ab_namePark,C.S.REFERENCE 2
77
ab_nameLiu,G.Q. AUTHORS Mishima,H., Yamada,T., Park,C.S. and Lin,G.Q.
78
titleMus musculus finished level genome sequence TITLE Mus musculus finished level genome sequence
79
statusUnpublished JOURNAL Unpublished
80
year2024 COMMENT Please visit our web site
81
DATEhold_date20271201 URL:https://www.ddbj.nig.ac.jp/
82
ST_COMMENTtagset_idGenome-Assembly-Data
83
Assembly Method
Unicycler v. 0.4.7 ##Genome-Assembly-Data-START##
84
Assembly Name
Mmus_1.0 Assembly Method :: CLC Genomics Workbench v. 24.0.2
85
Genome Coverage
250x Assembly Name :: Mmus_1.0
86
Sequencing Technology
PacBio Sequel; Illumina MiSeq; Dovetail Hi-C; Bionano Saphyr Genome Coverage :: 250x
87
chr1_assemblysource1..30584173organismMus musculus Sequencing Technology :: PacBio Sequel; Illumina MiSeq;
88
mol_typegenomic DNA Dovetail Hi-C; Bionano Saphyr
89
chromosome1 ##Genome-Assembly-Data-END##
90
isolatemsmd-1FEATURES Location/Qualifiers
91
geo_loc_namemissing: lab stock source 1..30584173
92
collection_datemissing: lab stock /chromosome="1"
93
ff_definition@@[organism]@@ @@[isolate]@@ DNA, chromosome @@[chromosome]@@, genomic sequence /isolate="msmd-1"
94
assembly_gap1..100
estimated_length
unknown /mol_type="genomic DNA"
95
gap_typetelomere /organism="Mus musculus"
96
mRNAcomplement(18829..21927)locus_tagABC123_00010 /collection_date="missing: lab stock"
97
CDScomplement(29121..29393)producthypothetical protein /geo_loc_name="missing: lab stock"
98
transl_table1 assembly_gap 1..100
99
codon_start1 /estimated_length=100
100
locus_tagABC123_00010 /gap_type="telomere"