Knee_v1.4_DRAFT

	A	B	C	D	E	F	G	H	I	J	K	L	M	N	O	P	Q	R	S	T	U	V	W	X	Y	Z	AA	AB	AC	AD	AE	AF	AG	AH	AI	AJ	AK	AL	AM	AN	AO	AP	AQ	AR	AS	AT	AU	AV	AW	AX	AY	AZ	BA
1	Anatomical Structures Cell Types and Biomarkers Table for knee
2
3	Author Name(s):	David Rowe; Martin Lotz; Peter Maye; Dong-Guk Shin
4	Author ORCID(s):	0000-0001-7852-7775; 0000-0002-6299-8799: 0000-0003-0098-4399; 0009-0004-4649-7363
5	Reviewer(s):	Ellen M. Quardokus
6	Reviewer ORCID(s):	0000-0001-7655-4833
7	General Publication(s):	https://doi.org/10.1136/ard-2022-223227.
8	Data DOI:
9	Date:	revise for October 1, 2024
10	Version Number:	v1.3
11	AS/1	AS/1/LABEL	AS/1/ID	AS/1/NOTE	AS/1/ABBR	AS/2	AS/2/LABEL	AS/2/ID	AS/2/NOTE	AS/2/ABBR	AS/3	AS/3/LABEL	AS/3/ID	AS/3/NOTE	AS/3/ABBR	AS/4	AS/4/LABEL	AS/4/ID	AS/4/NOTE	AS/4/ABBR	AS/5	AS/5/LABEL	AS/5/ID	AS/5/NOTE	AS/5/ABBR	CT/1	CT/1/LABEL	CT/1/ID	CT/1/NOTE	CT/1/ABBR	CT/2	CT/2/LABEL	CT/2/ID	CT/2/NOTE	CT/2/ABBR	BGene/1	BGene/1/LABEL	BGene/1/ID	BGene/1/NOTE	BGene/1/ABBR	BGene/2	BGene/2/LABEL	BGene/2/ID	BGene/2/NOTE	BGene/2/ABBR	BGene/3	BGene/3/LABEL	BGene/3/ID	BGene/3/NOTE	BGene/3/ABBR	REF/1	REF/1/ID	REF/1/NOTES

12	knee	knee	UBERON:0001465			knee joint	Knee Joint	UBERON:0001485			Distal Femur	condyle of femur	UBERON:0009980			Medial Condyle	medial condyle of femur	UBERON:0009984			Articular Cartilage of femur	articular cartilage of joint	UBERON:0010996			articular chondrocyte of the femur	articular chondrocyte	CL:1001607			Regulatory Chondrocyte 1			New term Request CL	RegC-1	ANGPTL4	angiopoietin like 4	HGNC:16039			CHI3L1	chitinase 3 like 1	HGNC:1932			CHI3L2	chitinase 3 like 2	HGNC:1933			https://doi.org/10.1136/ard-2022-223227	https://doi.org/10.1136/ard-2022-223227
13	knee	knee	UBERON:0001465			knee joint	Knee Joint	UBERON:0001485			Distal Femur	condyle of femur	UBERON:0009980			Medial Condyle	medial condyle of femur	UBERON:0009984			Articular Cartilage of femur	articular cartilage of joint	UBERON:0010996			articular chondrocyte of the femur	articular chondrocyte	CL:1001607			Regulatory Chondrocyte 2			New term Request CL	RegC-2	MT1G	metallothionein 1G	HGNC:7399			MT1E	metallothionein 1E	HGNC:7397			MT1H	metallothionein 1H	HGNC:7400			https://doi.org/10.1136/ard-2022-223227	https://doi.org/10.1136/ard-2022-223227
14	knee	knee	UBERON:0001465			knee joint	Knee Joint	UBERON:0001485			Distal Femur	condyle of femur	UBERON:0009980			Medial Condyle	medial condyle of femur	UBERON:0009984			Articular Cartilage of femur	articular cartilage of joint	UBERON:0010996			articular chondrocyte of the femur	articular chondrocyte	CL:1001607			Effector Chondrocyte			New term Request CL	EC	STC2	stanniocalcin 2	HGNC:11374			CHAD	chondroadherin	HGNC:1909			IGFBP7	insulin like growth factor binding protein 7	HGNC:5476			https://doi.org/10.1136/ard-2022-223227	https://doi.org/10.1136/ard-2022-223227
15	knee	knee	UBERON:0001465			knee joint	Knee Joint	UBERON:0001485			Distal Femur	condyle of femur	UBERON:0009980			Medial Condyle	medial condyle of femur	UBERON:0009984			Articular Cartilage of femur	articular cartilage of joint	UBERON:0010996			articular chondrocyte of the femur	articular chondrocyte	CL:1001607			Prefibrocartilage Chondrocyte			New term Request CL	preFC	PRG4	proteoglycan 4	HGNC:9364			COL2A1	collagen type II alpha 1 chain	HGNC:2200			CTHRC1	collagen triple helix repeat containing 1	HGNC:18831			https://doi.org/10.1136/ard-2022-223227	https://doi.org/10.1136/ard-2022-223227
16	knee	knee	UBERON:0001465			knee joint	Knee Joint	UBERON:0001485			Distal Femur	condyle of femur	UBERON:0009980			Medial Condyle	medial condyle of femur	UBERON:0009984			Articular Cartilage of femur	articular cartilage of joint	UBERON:0010996			articular chondrocyte of the femur	articular chondrocyte	CL:1001607			Fibrocartilage Chondrocyte 1			New term Request CL	FC-1	MSMP	microseminoprotein, prostate associated	HGNC:29663			COL3A1	collagen type III alpha 1 chain	HGNC:2201			COL1A2	collagen type I alpha 2 chain	HGNC:2198			https://doi.org/10.1136/ard-2022-223227	https://doi.org/10.1136/ard-2022-223227
17	knee	knee	UBERON:0001465			knee joint	Knee Joint	UBERON:0001485			Distal Femur	condyle of femur	UBERON:0009980			Medial Condyle	medial condyle of femur	UBERON:0009984			Articular Cartilage of femur	articular cartilage of joint	UBERON:0010996			articular chondrocyte of the femur	articular chondrocyte	CL:1001607			Fibrocartilage Chondrocyte 2			New term Request CL	FC-2	IGFBP5	insulin like growth factor binding protein 5	HGNC:5474			PRG4	proteoglycan 4	HGNC:9364			CTHRC1	collagen triple helix repeat containing 1	HGNC:18831			https://doi.org/10.1136/ard-2022-223227	https://doi.org/10.1136/ard-2022-223227
18	knee	knee	UBERON:0001465			knee joint	Knee Joint	UBERON:0001485			Distal Femur	condyle of femur	UBERON:0009980			Medial Condyle	medial condyle of femur	UBERON:0009984			Articular Cartilage of femur	articular cartilage of joint	UBERON:0010996			articular chondrocyte of the femur	articular chondrocyte	CL:1001607			Homeostatic Chodrocyte			New term Request CL	HomC	MMP3	matrix metallopeptidase 3	HGNC:7173			CCL2	C-C motif chemokine ligand 2	HGNC:10618			RCAN1	regulator of calcineurin 1	HGNC:3040			https://doi.org/10.1136/ard-2022-223227	https://doi.org/10.1136/ard-2022-223227
19	knee	knee	UBERON:0001465			knee joint	Knee Joint	UBERON:0001485			Distal Femur	condyle of femur	UBERON:0009980			Medial Condyle	medial condyle of femur	UBERON:0009984			Articular Cartilage of femur	articular cartilage of joint	UBERON:0010996			articular chondrocyte of the femur	articular chondrocyte	CL:1001607			Reparative Chondrocyte			New term Request CL	RepC	CILP	cartilage intermediate layer protein	HGNC:1980			LOX	lysyl oxidase	HGNC:6664			ACAN	aggrecan	HGNC:319			https://doi.org/10.1136/ard-2022-223227	https://doi.org/10.1136/ard-2022-223227
20	knee	knee	UBERON:0001465			knee joint	Knee Joint	UBERON:0001485			Distal Femur	condyle of femur	UBERON:0009980			Medial Condyle	medial condyle of femur	UBERON:0009984			Articular Cartilage of femur	articular cartilage of joint	UBERON:0010996			articular chondrocyte of the femur	articular chondrocyte	CL:1001607			Prehypertrophic Chondrocyte			New term Request CL	preHTC	FST	follistatin	HGNC:3971			C11orf96	chromosome 11 open reading frame 96	HGNC:38675			INHBA	inhibin subunit beta A	HGNC:6066			https://doi.org/10.1136/ard-2022-223227	https://doi.org/10.1136/ard-2022-223227
21	knee	knee	UBERON:0001465			knee joint	Knee Joint	UBERON:0001485			Distal Femur	condyle of femur	UBERON:0009980			Medial Condyle	medial condyle of femur	UBERON:0009984			Articular Cartilage of femur	articular cartilage of joint	UBERON:0010996			articular chondrocyte of the femur	articular chondrocyte	CL:1001607			Hypertrophic Chondrocyte	hypertrophic chondrocyte	CL:0000743		HTC	IBSP	integrin binding sialoprotein	HGNC:5341			SPP1	secreted phosphoprotein 1	HGNC:11255			COL10A1	collagen type X alpha 1 chain	HGNC:2185			https://doi.org/10.1136/ard-2022-223227	https://doi.org/10.1136/ard-2022-223227
22	knee	knee	UBERON:0001465			knee joint	Knee Joint	UBERON:0001485			Distal Femur	condyle of femur	UBERON:0009980			Lateral Condyle	lateral condyle of femur	UBERON:0009985			Articular Cartilage of femur	articular cartilage of joint	UBERON:0010996			articular chondrocyte of the femur	articular chondrocyte	CL:1001607			Regulatory Chondrocyte 1			New term Request CL	RegC-1	ANGPTL4	angiopoietin like 4	HGNC:16039			CHI3L1	chitinase 3 like 1	HGNC:1932			CHI3L2	chitinase 3 like 2	HGNC:1933			https://doi.org/10.1136/ard-2022-223227	https://doi.org/10.1136/ard-2022-223227
23	knee	knee	UBERON:0001465			knee joint	Knee Joint	UBERON:0001485			Distal Femur	condyle of femur	UBERON:0009980			Lateral Condyle	lateral condyle of femur	UBERON:0009985			Articular Cartilage of femur	articular cartilage of joint	UBERON:0010996			articular chondrocyte of the femur	articular chondrocyte	CL:1001607			Regulatory Chondrocyte 2			New term Request CL	RegC-2	MT1G	metallothionein 1G	HGNC:7399			MT1E	metallothionein 1E	HGNC:7397			MT1H	metallothionein 1H	HGNC:7400			https://doi.org/10.1136/ard-2022-223227	https://doi.org/10.1136/ard-2022-223227
24	knee	knee	UBERON:0001465			knee joint	Knee Joint	UBERON:0001485			Distal Femur	condyle of femur	UBERON:0009980			Lateral Condyle	lateral condyle of femur	UBERON:0009985			Articular Cartilage of femur	articular cartilage of joint	UBERON:0010996			articular chondrocyte of the femur	articular chondrocyte	CL:1001607			Effector Chondrocyte			New term Request CL	EC	STC2	stanniocalcin 2	HGNC:11374			CHAD	chondroadherin	HGNC:1909			IGFBP7	insulin like growth factor binding protein 7	HGNC:5476			https://doi.org/10.1136/ard-2022-223227	https://doi.org/10.1136/ard-2022-223227
25	knee	knee	UBERON:0001465			knee joint	Knee Joint	UBERON:0001485			Distal Femur	condyle of femur	UBERON:0009980			Lateral Condyle	lateral condyle of femur	UBERON:0009985			Articular Cartilage of femur	articular cartilage of joint	UBERON:0010996			articular chondrocyte of the femur	articular chondrocyte	CL:1001607			Prefibrocartilage Chondrocyte			New term Request CL	preFC	PRG4	proteoglycan 4	HGNC:9364			COL2A1	collagen type II alpha 1 chain	HGNC:2200			CTHRC1	collagen triple helix repeat containing 1	HGNC:18831			https://doi.org/10.1136/ard-2022-223227	https://doi.org/10.1136/ard-2022-223227
26	knee	knee	UBERON:0001465			knee joint	Knee Joint	UBERON:0001485			Distal Femur	condyle of femur	UBERON:0009980			Lateral Condyle	lateral condyle of femur	UBERON:0009985			Articular Cartilage of femur	articular cartilage of joint	UBERON:0010996			articular chondrocyte of the femur	articular chondrocyte	CL:1001607			Fibrocartilage Chondrocyte 1			New term Request CL	FC-1	MSMP	microseminoprotein, prostate associated	HGNC:29663			COL3A1	collagen type III alpha 1 chain	HGNC:2201			COL1A2	collagen type I alpha 2 chain	HGNC:2198			https://doi.org/10.1136/ard-2022-223227	https://doi.org/10.1136/ard-2022-223227
27	knee	knee	UBERON:0001465			knee joint	Knee Joint	UBERON:0001485			Distal Femur	condyle of femur	UBERON:0009980			Lateral Condyle	lateral condyle of femur	UBERON:0009985			Articular Cartilage of femur	articular cartilage of joint	UBERON:0010996			articular chondrocyte of the femur	articular chondrocyte	CL:1001607			Fibrocartilage Chondrocyte 2			New term Request CL	FC-2	IGFBP5	insulin like growth factor binding protein 5	HGNC:5474			PRG4	proteoglycan 4	HGNC:9364			CTHRC1	collagen triple helix repeat containing 1	HGNC:18831			https://doi.org/10.1136/ard-2022-223227	https://doi.org/10.1136/ard-2022-223227
28	knee	knee	UBERON:0001465			knee joint	Knee Joint	UBERON:0001485			Distal Femur	condyle of femur	UBERON:0009980			Lateral Condyle	lateral condyle of femur	UBERON:0009985			Articular Cartilage of femur	articular cartilage of joint	UBERON:0010996			articular chondrocyte of the femur	articular chondrocyte	CL:1001607			Homeostatic Chodrocyte			New term Request CL	HomC	MMP3	matrix metallopeptidase 3	HGNC:7173			CCL2	C-C motif chemokine ligand 2	HGNC:10618			RCAN1	regulator of calcineurin 1	HGNC:3040			https://doi.org/10.1136/ard-2022-223227	https://doi.org/10.1136/ard-2022-223227
29	knee	knee	UBERON:0001465			knee joint	Knee Joint	UBERON:0001485			Distal Femur	condyle of femur	UBERON:0009980			Lateral Condyle	lateral condyle of femur	UBERON:0009985			Articular Cartilage of femur	articular cartilage of joint	UBERON:0010996			articular chondrocyte of the femur	articular chondrocyte	CL:1001607			Reparative Chondrocyte			New term Request CL	RepC	CILP	cartilage intermediate layer protein	HGNC:1980			LOX	lysyl oxidase	HGNC:6664			ACAN	aggrecan	HGNC:319			https://doi.org/10.1136/ard-2022-223227	https://doi.org/10.1136/ard-2022-223227
30	knee	knee	UBERON:0001465			knee joint	Knee Joint	UBERON:0001485			Distal Femur	condyle of femur	UBERON:0009980			Lateral Condyle	lateral condyle of femur	UBERON:0009985			Articular Cartilage of femur	articular cartilage of joint	UBERON:0010996			articular chondrocyte of the femur	articular chondrocyte	CL:1001607			Prehypertrophic Chondrocyte			New term Request CL	preHTC	FST	follistatin	HGNC:3971			C11orf96	chromosome 11 open reading frame 96	HGNC:38675			INHBA	inhibin subunit beta A	HGNC:6066			https://doi.org/10.1136/ard-2022-223227	https://doi.org/10.1136/ard-2022-223227
31	knee	knee	UBERON:0001465			knee joint	Knee Joint	UBERON:0001485			Distal Femur	condyle of femur	UBERON:0009980			Lateral Condyle	lateral condyle of femur	UBERON:0009985			Articular Cartilage of femur	articular cartilage of joint	UBERON:0010996			articular chondrocyte of the femur	articular chondrocyte	CL:1001607			Hypertrophic Chondrocyte	hypertrophic chondrocyte	CL:0000743		HTC	IBSP	integrin binding sialoprotein	HGNC:5341			SPP1	secreted phosphoprotein 1	HGNC:11255			COL10A1	collagen type X alpha 1 chain	HGNC:2185			https://doi.org/10.1136/ard-2022-223227	https://doi.org/10.1136/ard-2022-223227
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