Obsolete GO terms in Postgres
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Postgres tableOAOA fieldOntologyNoteCurator Go ahead?Where's the dumper ?
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ant_bio_goid???N/AGene Ontology???
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ant_cell_goid???N/AGene Ontology???
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ant_mol_goid???N/AGene Ontology???
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ptg_goid???N/AGene Ontologyfew entries???
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dis_phenotypeaffected???N/A???
Currently unused
RanjanaTazendra: /home/postgres/work/citace_upload/dis_disease/use_package.pl
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abp_humandoidAntibody OAAntibody for diseaseDisease OntologyDanielaYesTazendra: /home/postgres/work/citace_upload/antibody/use_package.pl
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cns_humandoidConstruct OADiseaseDisease OntologyKarenTazendra: /home/postgres/work/citace_upload/cns_construct/use_package.pl
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dis_humandoidDisease OADisease NameDisease OntologyRanjanaTazendra: /home/postgres/work/citace_upload/dis_disease/use_package.pl
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dis_phenotypeamelioratedDisease OA
Ameliorated Phenotype
Phenotype Ontology
RanjanaTazendra: /home/postgres/work/citace_upload/dis_disease/use_package.pl
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dis_phenotypediseaseDisease OADisease Phenotype
Phenotype Ontology
RanjanaTazendra: /home/postgres/work/citace_upload/dis_disease/use_package.pl
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dis_phenotypeexacerbatedDisease OA
Exacerbated Phenotype
Phenotype Ontology
RanjanaTazendra: /home/postgres/work/citace_upload/dis_disease/use_package.pl
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dit_phenotypeaffectedDisease Term OAAffected Phenotype
Phenotype Ontology
RanjanaTazendra: /home/postgres/work/citace_upload/dit_diseaseterm/use_package.pl
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dit_phenotypediseaseDisease Term OADisease Phenotype
Phenotype Ontology
RanjanaTazendra: /home/postgres/work/citace_upload/dit_diseaseterm/use_package.pl
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dit_suggested_phenotypeDisease Term OASuggested Phenotype???
Currently unused
RanjanaTazendra: /home/postgres/work/citace_upload/dit_diseaseterm/use_package.pl
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exp_anatomyExpression OAAnatomyAnatomy OntologyDanielaYesTazendra: /home/postgres/work/citace_upload/expr_pattern/use_package.pl
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exp_goidExpression OAGO TermGene OntologyDanielaYesTazendra: /home/postgres/work/citace_upload/expr_pattern/use_package.pl
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exp_granatomyExpression OAGR AnatomyAnatomy OntologyDanielaYesTazendra: /home/postgres/work/citace_upload/expr_pattern/use_package.pl
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exp_grcellcycleExpression OAGR Cell CycleGene OntologyDanielaYesTazendra: /home/postgres/work/citace_upload/expr_pattern/use_package.pl
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exp_grlifestageExpression OAGR LSLife Stage OntologyDanielaYesTazendra: /home/postgres/work/citace_upload/expr_pattern/use_package.pl
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exp_lifestageExpression OALife StageLife Stage OntologyDanielaYesTazendra: /home/postgres/work/citace_upload/expr_pattern/use_package.pl
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exp_qualifierlsExpression OAQualifier LSLife Stage OntologyDanielaYesTazendra: /home/postgres/work/citace_upload/expr_pattern/use_package.pl
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grg_anatomyGene Reg OAAnatomyAnatomy OntologyChrisYesTazendra: /home/postgres/work/citace_upload/gene_regulation/use_package.pl
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grg_lifestageGene Reg OALife StageLife Stage OntologyChrisYesTazendra: /home/postgres/work/citace_upload/gene_regulation/use_package.pl
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gop_goidGO OAGO TermGene OntologyKimberly
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gop_with_phenotypeGO OAWith Phenotype
Phenotype Ontology
Kimberly
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int_phenotypeInteraction OA
Interaction Phenotype(s)
Phenotype Ontology
ChrisYesTazendra: /home/acedb/xiaodong/oa_interactions_dumper/use_package.pl
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wbb_involvedN/AN/AAnatomy OntologyRaymond?
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wbb_notinvolvedN/AN/AAnatomy OntologyRaymond?
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wbb_phenotypeN/AN/A
Phenotype Ontology
Raymond?
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app_anatomyPhenotype OAAnatomyAnatomy OntologyChrisYesTazendra: /home/acedb/work/allele_phenotype/use_package.pl
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app_anatomyqualityPhenotype OAAnatomy QualityPATOChrisYesTazendra: /home/acedb/work/allele_phenotype/use_package.pl
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app_gocomponentPhenotype OAGO ComponentGene OntologyChrisYesTazendra: /home/acedb/work/allele_phenotype/use_package.pl
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app_gocomponentqualityPhenotype OAGO C QualityPATOChrisYesTazendra: /home/acedb/work/allele_phenotype/use_package.pl
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app_gofunctionPhenotype OAGO FunctionGene OntologyChrisYesTazendra: /home/acedb/work/allele_phenotype/use_package.pl
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app_gofunctionqualityPhenotype OAGO F QualityPATOChrisYesTazendra: /home/acedb/work/allele_phenotype/use_package.pl
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app_goprocessPhenotype OAGO ProcessGene OntologyChrisYesTazendra: /home/acedb/work/allele_phenotype/use_package.pl
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app_goprocessqualityPhenotype OAGO P QualityPATOChrisYesTazendra: /home/acedb/work/allele_phenotype/use_package.pl
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app_lifestagePhenotype OALife StageLife Stage OntologyChrisYesTazendra: /home/acedb/work/allele_phenotype/use_package.pl
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app_lifestagequalityPhenotype OALife Stage QualityPATOChrisYesTazendra: /home/acedb/work/allele_phenotype/use_package.pl
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app_molaffectedqualityPhenotype OAMol Aff QualityPATOChrisYesTazendra: /home/acedb/work/allele_phenotype/use_package.pl
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app_termPhenotype OAPhenotype
Phenotype Ontology
ChrisYesTazendra: /home/acedb/work/allele_phenotype/use_package.pl
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pic_goidPicture OACellular_componentGene OntologyDanielaYesTazendra: /home/postgres/work/citace_upload/pic_picture/dump_picture_ace.pl
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pic_anat_termPicture OAAnatomy_termAnatomy OntologyDanielaYesTazendra: /home/postgres/work/citace_upload/pic_picture/dump_picture_ace.pl
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pic_lifestagePicture OALife StageLife Stage OntologyDanielaYesTazendra: /home/postgres/work/citace_upload/pic_picture/dump_picture_ace.pl
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pic_phenotypePicture OAPhenotype
Phenotype Ontology
DanielaYesTazendra: /home/postgres/work/citace_upload/pic_picture/dump_picture_ace.pl
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prt_goidProcess Term OAGO_termGene OntologyKarenTazendra: /home/postgres/work/citace_upload/process/use_process_package.pl
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rna_anatomyRNAi OAAnatomyAnatomy OntologyChrisYesTazendra: /home/postgres/work/citace_upload/rnai/use_package.pl
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rna_anatomyqualityRNAi OAAnatomy QualityPATOChrisYesTazendra: /home/postgres/work/citace_upload/rnai/use_package.pl
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rna_child_ofRNAi OAChild Of
Phenotype Ontology
ChrisYesTazendra: /home/postgres/work/citace_upload/rnai/use_package.pl
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rna_gocomponentRNAi OAGO ComponentGene OntologyChrisYesTazendra: /home/postgres/work/citace_upload/rnai/use_package.pl
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rna_gocomponentqualityRNAi OAGO C QualityPATOChrisYesTazendra: /home/postgres/work/citace_upload/rnai/use_package.pl
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rna_gofunctionRNAi OAGO FunctionGene OntologyChrisYesTazendra: /home/postgres/work/citace_upload/rnai/use_package.pl
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rna_gofunctionqualityRNAi OAGO F QualityPATOChrisYesTazendra: /home/postgres/work/citace_upload/rnai/use_package.pl
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rna_goprocessRNAi OAGO ProcessGene OntologyChrisYesTazendra: /home/postgres/work/citace_upload/rnai/use_package.pl
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rna_goprocessqualityRNAi OAGO P QualityPATOChrisYesTazendra: /home/postgres/work/citace_upload/rnai/use_package.pl
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rna_lifestageRNAi OALife StageLife Stage OntologyChrisYesTazendra: /home/postgres/work/citace_upload/rnai/use_package.pl
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rna_lifestagequalityRNAi OALife Stage QualityPATOChrisYesTazendra: /home/postgres/work/citace_upload/rnai/use_package.pl
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rna_molaffectedqualityRNAi OAMol Aff QualityPATOChrisYesTazendra: /home/postgres/work/citace_upload/rnai/use_package.pl
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rna_phenotypeRNAi OAPhenotype Observed
Phenotype Ontology
ChrisYesTazendra: /home/postgres/work/citace_upload/rnai/use_package.pl
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sqf_soterm
Sequence Feature OA
SOSequence OntologyGary WilliamsNo
read only OA, data not dumped
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pro_anatomyTopic OAAnatomy_termAnatomy OntologyKaren
Tazendra: /home/postgres/work/citace_upload/process/use_process_curation_package.pl
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pro_humdiseaseTopic OAHuman_diseaseDisease OntologyKaren
Tazendra: /home/postgres/work/citace_upload/process/use_process_curation_package.pl
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pro_lifestageTopic OALife_stageLife Stage OntologyKaren
Tazendra: /home/postgres/work/citace_upload/process/use_process_curation_package.pl
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pro_phenotypeTopic OAPhenotype
Phenotype Ontology
Karen
Tazendra: /home/postgres/work/citace_upload/process/use_process_curation_package.pl
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trp_humandoidTransgene OADiseaseDisease OntologyKarenTazendra: /home/postgres/work/citace_upload/transgene/use_package.pl
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