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July 31 - August 1, 2021Online
More info:
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To help attendees find each other and organize into groups. Please tell us about yourself and what topic(s) interest you.
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Add your project proposal to this slide deck:
https://docs.google.com/presentation/d/10blW3DVEIUArq12mrKf-PIJQNn01GOSmGOH8d7sCUWo/edit#slide=id.gc6f80d1ff_0_0
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First nameLast NameCompany / affiliationWork City
Work State/Region
Work Country
GitHub usernameAvailabilityCluster(s) of Interest
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PeterCockJames Hutton InstitueDundeeScotlandUKhttps://github.com/peterjc/Intermitent during the weekendBiopython: onboarding newcomers; perhaps working on lazy loading FAI files if time allows
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BradChapmanGinkgo BioworksBostonMAUShttps://github.com/chapmanb/When not with kids on the weekendSynthetic biology; metagenomic data management
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ChrisFieldsCarver Biotech Center/HPCBio, Univ. IllinoisUrbanaILUShttps://github.com/cjfieldsIntermittent during the weekend
Bio* (BioPerl, yes I'm old but pretty flexible these days). Workflow development (primarily Nextflow). Metagenome/microbiome, genome assembly, variant analysis
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PeterSelbyCornell UniversityIthacaNYUS
https://github.com/BrapiCoordinatorSelby
Available all weekendSystem integration, Data sharing, API's, general software development
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BhanuGandhamBroad InstituteCambridgeMAUS
https://github.com/bhanugandham
Intermittent during the weekend
GATK tools and pipelines, microbial variant discovery, community collaboration, open source software
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TomMaddenNational Institutes of HealthBethesdaMDUShttps://github.com/tom6931Intermittent during the weekend
ElasticBLAST: user testing and feedback (https://blast.ncbi.nlm.nih.gov/doc/elastic-blast/); all things BLAST or alignments
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MichaelHeuerUC BerkeleyMinneapolisMNUShttps://github.com/heuermhAvailable all weekendNextflow, Genomics on Spark (ADAM, Disq, GATK4 on Spark, etc.), Biojava, pangenomes, ...
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DavidTwesigomweWits UniversityJohannesburgGautengSouth Africa
https://github.com/twesigomwedavid
Intermittent during the weekendNextflow, pangenome visualisation, haplotyping
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GregBoratynNational Institutes of HealthBethesdaMDUShttps://github.com/boratyngIntermittent during the weekendElasticBLAST, open source software, sequence alignment, NGS mapping
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HervéMénagerInstitut PasteurParisIDFFrancehttps://github.com/hmenagerAt least intermittent, maybe all weekendEDAM, bio.tools, CWL and all things workflows or software
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MatúšKalašUniversity of BergenBergenVestlandNorwayhttps://github.com/matuskalasProbably all weekendEDAM, registries, data formats & models, inderdisciplinary open science stuff, citizen science
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MelissaBlackOutreachy/EDAMSão PauloSPBrazilhttps://github.com/melibleqAll weekend (in UTC-3 time zone)EDAM, open science, GIS tools
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SteffenMöllerUniversity of RostockRostockGermanyhttps://github.com/smoeProbably all weekend
EDAM (but we do not need a CoFest to meet up), Debian, "Game demos" (let us make workflow demonstrations somehow cool for the public at large)
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SujayPatilSage BionetworksSeattleWAUShttps://github.com/sujaypatil96Intermitently over the weekendGATK, Bioinformatics pipeline development, Biopython, Workflow development, Ontologies
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Michael R. CrusoeELIXIR-NLBerlinGermanyhttps://github.com/mr-cProbably all weekendCWL v1.2.1
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HagerEldakrouryOutreachy/Ain Shams University CairoEgypt
https://github.com/HagerDakroury
All weekend EDAM, opensource, data visualization
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JervenBollemanSwiss Institute of BioinformaticsGenevaSwitzerland
https://github.com/jervenbolleman
Intermittent during the weekendFAIR, SPARQL, RDF data integration ontology reuse
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AdelaideRhodesNCBI/NLM/NIHBostonMAUS
https://github.com/Arhodes-NCBI
Intermittently during the weekend
ElasticBLAST: user testing and feedback (https://blast.ncbi.nlm.nih.gov/doc/elastic-blast/); all things BLAST or alignments
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ColinDieshUC BerkeleyBerkeleyCAUShttps://github.com/cmdcolinIntermittent during the weekendJBrowse and web-based data visualization in general
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Hom ShresthaLaurentian UniversitySudburyOntarioCanadahttps://github.com/h-shresthaAll weekendData navigation, integration, security and analysis for policy research and evaluation
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VimalkumarVelayudhanSelf-employed IT consultantCorkCo. CorkIrelandhttps://github.com/vimalkvnAll weekendLinux, Python, user interfaces
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CharalamposLazaris
Whitehead Institute for Biomedical Research/Broad Institute
CambridgeMAUShttps://github.com/chlazarisIntermittent during the weekendLinux, R, Python, Nextflow
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EdmundMillerUniversity of Texas at DallasDallasTxUshttps://github.com/emiller88Intermittent during the weekendNextflow, Open source, Functional Genomics
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RavneetBhullerNIBSC/MHRA, UKLondonEnglandUK
https://github.com/kaurravneet4123
Intermittent during the weekendNextflow, somatic variant calling, metagenomics, viral genomics
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BraianCorreaUnor TechnologyDivinópolisMinas GeraisBrasil
https://github.com/BraianMendes
Available all weekendOpen science, Linux, Python, R, Javascript
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SergioRodríguezINIFAPCuernavacaMorelosMéxico
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RajeshSinghIndian Agriculture Research InstituteNew DelhiDelhiIndiahttps://github.com/RajeshIARIIntermittent during the weekendOpen science, Linux, Python, R, Elastic BLAST, Biotools
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Tulika BhardwajUniversity of Eastern FinlandKuopioFinlandFinland
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DinithiWickramaratneOutreachyColomboSri Lankahttps://github.com/dinithiWAll weekendWorkflows, CWL, Microbiome
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TedLiefeldUCSDSan DiegoCAUSAhttps://github.com/liefeldIntermittent during the weekend
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SpencerBlivenPaul Scherrer InstituteZürichZHCHhttps://github.com/sbliven/When not with kids on the weekendBiopython, BioJava; Structural biology,
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OsakpolorObasekiCommon Workflow Language/OutreachyLagosLagosNigeriahttps://github.com/obasekiosaIntermittent during the weekendNothing yet, Looking to explore. (but if it helps python, Java, Data, Bioinformatics, linux, HPC)
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JunjunZhangOntario Institute for Cancer ResearchTorontoOntarioCanadahttps://github.com/junjun-zhangProbably all weekend
Anything workflow related. Tools and best practices to develop reproducible, portable, reusable and shareable workflows
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IanSimpsonThe University of EdinburghEdinburghScotlandUKhttps://github.com/tisimpsonIntermittent during the weekendBiopython, R
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SanchiShahHAPLMumbaiMaharashtraIndiahttps://github.com/sanchi77Intermittent during the weekendR,Linux,Nextflow,Python,Software development
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Charlesde SouzaNANAGoaIndiaIntermittent during the weekendBiopython, Elastic BLAST, Genomics
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AntoineLainThe University of EdinburghEdinburghScotlandUKhttps://github.com/AntoinelfrIntermittent during the weekendBiopython, Python
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YeshaShresthaFDALaurelMDUSIntermittent during the weekendBiopython, R, ElasticBLAST, Workflow development, Bioinformatics, HPC, Genomics
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AnshikaSahInstitute of Home EconomicsNew DelhiDelhiIndiahttps://github.com/anshi-kaaaaAll weekendPython, Jekyll, open science, bioinformatics (Not specialised)
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AlejandraPerez JimenezPrivatedMexicoGuadalajaraJaliscoI do not have logIntermittent during the weekendcell culture, cell fractionation
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IanBraunCritical Path InstituteTucsonAZUShttps://github.com/irbraunProbably all weekendPython
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