COVID variants, US prevalence

	A	B	C	D	E	F	G	H	I	J	K	L	M
1	Derived from CDC strain monitoring data (US)
2
3	Lineage Bin	Variant	Informal name	1/16/21	1/30/21	2/13/21	2/27/21	3/13/21	3/27/21	Growth up to 3/27	Growth up to 3/13	Shrinking
4	Top	B.1.2		0.3535	0.3757	0.3569	0.2998	0.196	0.0999	0.5096938776	0.6537691795	1	0.2203764057
5	Top	B.1.596		0.0734	0.0857	0.077	0.0549	0.0394	0.0167	0.423857868	0.7176684882	1	0.4093960164
6	Top	B.1		0.0445	0.0464	0.0434	0.0395	0.0362	0.0244	0.6740331492	0.9164556962	1	0.26452184
7	Top	B.1.1.519		0.004	0.014	0.0193	0.0362	0.0459	0.0411	0.8954248366	1.267955801	1	0.2938043772
8	Top	B.1.243		0.0295	0.0267	0.0203	0.0236	0.0145	0.0064	0.4413793103	0.6144067797	1	0.2816171225
9	Top	B.1.234		0.0284	0.0321	0.022	0.018	0.0139	0.0049	0.3525179856	0.7722222222	1	0.5435018891
10	Top	B.1.526.1		0.0008	0.0026	0.0058	0.0162	0.0294	0.0391	1.329931973	1.814814815		0.2671803415
11	Top	B.1.1		0.0057	0.0113	0.0105	0.0153	0.0124	0.0091	0.7338709677	0.8104575163	1	0.09449791883
12	Top	B.1.526.2		0	0.0025	0.0013	0.0093	0.0165	0.0292	1.76969697	1.774193548		0.002534435262
13	Top	B.1.575		0.0034	0.0057	0.0074	0.0143	0.0147	0.0113	0.768707483	1.027972028	1	0.2522097274
14	Top	R.1		0.0015	0.0032	0.0057	0.0117	0.0134	0.0116	0.8656716418	1.145299145	1	0.2441523725
15	Other	Other		0.3707	0.2673	0.2455	0.1454	0.0811	0.0469	0.578298397	0.5577716644	1	-0.03680131849
16	VOC	B.1.1.7		0.0313	0.0341	0.0451	0.1142	0.2709	0.4412	1.628645257	2.372154116		0.3134319369
17	VOC	B.1.429		0.0347	0.0573	0.0882	0.0976	0.0914	0.0694	0.7592997812	0.9364754098	1	0.1891941067
18	VOC	B.1.427		0.0112	0.0216	0.0275	0.047	0.0421	0.029	0.6888361045	0.8957446809	1	0.2309905722
19	VOC	B.1.351		0.0004	0.0005	0.0036	0.0049	0.005	0.0067	1.34	1.020408163		-0.3132
20	VOC	P.1		0	0.0003	0.0003	0.0009	0.0053	0.0135	2.547169811	5.888888889		0.5674617302
21	VOI	B.1.526		0.0047	0.0081	0.0147	0.0422	0.0639	0.0921	1.441314554	1.514218009		0.048145944
22	VOI	P.2		0.0018	0.0031	0.0041	0.0067	0.0049	0.0031	0.6326530612	0.7313432836	1	0.1349437734
23	VOI	B.1.525		0.0006	0.0018	0.0014	0.0024	0.0029	0.0046	1.586206897	1.208333333		-0.3127229489
24
25	Filtering out strains that are shrinking:
26	Lineage Bin	Variant	Informal name	1/16/21	1/30/21	2/13/21	2/27/21	3/13/21	3/27/21	Growth up to 3/27	Growth up to 3/13	Time to >50% prevalence (days after 3/27)
27	Top	B.1.526.1		0.0008	0.0026	0.0058	0.0162	0.0294	0.0391	1.329931973	1.814814815	125.1398857
28	Top	B.1.526.2		0	0.0025	0.0013	0.0093	0.0165	0.0292	1.76969697	1.774193548	69.66999253
29	VOC	B.1.1.7		0.0313	0.0341	0.0451	0.1142	0.2709	0.4412	1.628645257	2.372154116	3.595290903
30	VOC	B.1.351		0.0004	0.0005	0.0036	0.0049	0.005	0.0067	1.34	1.020408163	206.2977011
31	VOC	P.1		0	0.0003	0.0003	0.0009	0.0053	0.0135	2.547169811	5.888888889	54.0853958
32	VOI	B.1.526		0.0047	0.0081	0.0147	0.0422	0.0639	0.0921	1.441314554	1.514218009	64.79541245
33	VOI	B.1.525		0.0006	0.0018	0.0014	0.0024	0.0029	0.0046	1.586206897	1.208333333	142.2833347
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