ABCDEFGHIJKLMNOPQRSTUVWXYZAAABACADAEAFAGAHAIAJAKALAMANAOAPAQARASATAUAVAWAXAYAZBABBBCBDBEBFBGBHBIBJBKBLBMBNBOBPBQBRBSBTBUBVBWBXBYBZCACBCCCDCECFCGCHCICJCKCLCMCNCOCPCQCRCSCTCUCV
1
Anatomical Structures, Cell Types and Biomarkers Table for Spinal Cord
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3
Author Name(s):Vilas Menon
4
Author ORCID(s):0000-0002-4096-8601
5
Reviewer(s):Ellen M. Quardokus
6
Reviewer ORCID(s):0000-0001-7655-4833
7
General Publication(s):
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
8
Data DOI:
https://doi.org/10.48539/HBM943.HDLM.983
9
Date:December 15, 2024
10
Version Number:v1.1
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AS/1AS/1/LABELAS/1/IDAS/1/NOTEAS/1/ABBRAS/2AS/2/LABELAS/2/IDAS/2/NOTEAS/2/ABBRAS/3AS/3/LABELAS/3/IDAS/3/NOTEAS/3/ABBRAS/4AS/4/LABELAS/4/IDAS/4/NOTEAS/4/ABBRAS/5AS/5/LABELAS/5/IDAS/5/NOTEAS/5/ABBRCT/1CT/1/LABELCT/1/IDCT/1/NOTECT/1/ABBRBGene/1
BGene/1/LABEL
BGene/1/ID
BGene/1/NOTE
BGene/1/ABBRBGene/2
BGene/2/LABEL
BGene/2/ID
BGene/2/NOTE
BGene/2/ABBR
BGene/3
BGene/3/LABEL
BGene/3/IDBGene/3/NOTEBGene/3/ABBRBProtein/1
BProtein/1/LABEL
BProtein/1/ID
BProtein/1/NOTE
BProtein/1/ABBR
REF/1REF/1/IDREF/1/NOTES
12
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical spinal cord dorsal column
cervical spinal cord dorsal column
UBERON:0005841
13
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical spinal cord gray commissure
cervical spinal cord gray commissure
UBERON:0029626
14
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical spinal cord lateral column
cervical spinal cord lateral column
UBERON:0005849
15
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical spinal cord lateral horn
cervical spinal cord lateral horn
UBERON:0014619
16
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical spinal cord ventral column
cervical spinal cord ventral column
UBERON:0005854
17
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical spinal cord ventral commissure
cervical spinal cord ventral commissure
UBERON:0007836
18
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical spinal cord ventral horn
cervical spinal cord ventral horn
UBERON:0014621
19
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical spinal cord white matter
cervical spinal cord white matter
UBERON:0014614
20
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar division of spinal cord central canal
lumbar division of spinal cord central canal
UBERON:0014543
Ependymal CellEpendymal CellCL:0000065CFAP73
cilia and flagella associated protein 73
HGNC:37100 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
21
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord white matter
lumbar spinal cord white matter
UBERON:0026386
Oligodendrocyte
Oligodendrocyte
CL:0000128MOG
myelin oligodendrocyte glycoprotein
HGNC:7197 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
22
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord white matter
lumbar spinal cord white matter
UBERON:0026386
Oligodendrocyte Precursor Cell
Oligodendrocyte Precursor Cell
CL:0002453BEST3bestrophin 3HGNC:17105 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
23
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord white matter
lumbar spinal cord white matter
UBERON:0026386
AstrocyteAstrocyteCL:0000127SLC14A1
solute carrier family 14 member 1 (Kidd blood group)
HGNC:10918 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
24
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord white matter
lumbar spinal cord white matter
UBERON:0026386
Microgliamicroglial cellCL:0000129AIF1
allograft inflammatory factor 1
HGNC:352IBA1
ionized calcium-binding adapter molecule 1
HGNC:352
Protein for gene AIF1
https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
25
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord white matter
lumbar spinal cord white matter
UBERON:0026386
Endothelial CellEndothelial CellCL:0000115CLDN5claudin 5HGNC:2047 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
26
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord lateral column
lumbar spinal cord lateral column
UBERON:0005850
27
spinal cordspinal cordUBERON:0002240
thoracic spinal cord
thoracic spinal cord
UBERON:0003038
thoracic spinal cord dorsal column
thoracic spinal cord dorsal column
UBERON:0005839
28
spinal cordspinal cordUBERON:0002240
thoracic spinal cord
thoracic spinal cord
UBERON:0003038
thoracic spinal cord gray commissure
thoracic spinal cord gray commissure
UBERON:0026293
29
spinal cordspinal cordUBERON:0002240
thoracic spinal cord
thoracic spinal cord
UBERON:0003038
thoracic spinal cord lateral column
thoracic spinal cord lateral column
UBERON:0005847
30
spinal cordspinal cordUBERON:0002240
thoracic spinal cord
thoracic spinal cord
UBERON:0003038
thoracic spinal cord lateral horn
thoracic spinal cord lateral horn
UBERON:0014607
31
spinal cordspinal cordUBERON:0002240
thoracic spinal cord
thoracic spinal cord
UBERON:0003038
thoracic spinal cord ventral column
thoracic spinal cord ventral column
UBERON:0005852
32
spinal cordspinal cordUBERON:0002240
thoracic spinal cord
thoracic spinal cord
UBERON:0003038
thoracic spinal cord ventral commissure
thoracic spinal cord ventral commissure
UBERON:0007837
33
spinal cordspinal cordUBERON:0002240
thoracic spinal cord
thoracic spinal cord
UBERON:0003038
thoracic spinal cord ventral horn
thoracic spinal cord ventral horn
UBERON:0014610
34
spinal cordspinal cordUBERON:0002240
thoracic spinal cord
thoracic spinal cord
UBERON:0003038
thoracic spinal cord white matter
thoracic spinal cord white matter
UBERON:0014637
35
spinal cordspinal cordUBERON:0002240
thoracic spinal cord
thoracic spinal cord
UBERON:0003038
thoracic division of spinal cord central canal
thoracic division of spinal cord central canal
UBERON:0014541
36
spinal cordspinal cordUBERON:0002240
sacral spinal cord
sacral spinal cord
UBERON:0005843
sacral division of spinal cord central canal
sacral division of spinal cord central canal
UBERON:0014547
37
spinal cordspinal cordUBERON:0002240
sacral spinal cord
sacral spinal cord
UBERON:0005843
sacral spinal cord dorsal column
sacral spinal cord dorsal column
UBERON:0005840
38
spinal cordspinal cordUBERON:0002240
sacral spinal cord
sacral spinal cord
UBERON:0005843
sacral spinal cord dorsal horn
sacral spinal cord dorsal horn
UBERON:0033939
39
spinal cordspinal cordUBERON:0002240
sacral spinal cord
sacral spinal cord
UBERON:0005843
sacral spinal cord gray commissure
sacral spinal cord gray commissure
UBERON:0031111
40
spinal cordspinal cordUBERON:0002240
sacral spinal cord
sacral spinal cord
UBERON:0005843
sacral spinal cord lateral column
sacral spinal cord lateral column
UBERON:0005848
41
spinal cordspinal cordUBERON:0002240
sacral spinal cord
sacral spinal cord
UBERON:0005843
sacral spinal cord lateral horn
sacral spinal cord lateral horn
UBERON:0029538
42
spinal cordspinal cordUBERON:0002240
sacral spinal cord
sacral spinal cord
UBERON:0005843
sacral spinal cord ventral column
sacral spinal cord ventral column
UBERON:0005853
43
spinal cordspinal cordUBERON:0002240
sacral spinal cord
sacral spinal cord
UBERON:0005843
sacral spinal cord ventral commissure
sacral spinal cord ventral commissure
UBERON:0007835
44
spinal cordspinal cordUBERON:0002240
sacral spinal cord
sacral spinal cord
UBERON:0005843
sacral spinal cord ventral horn
sacral spinal cord ventral horn
UBERON:0032748
45
spinal cordspinal cordUBERON:0002240
sacral spinal cord
sacral spinal cord
UBERON:0005843
sacral spinal cord white matter
sacral spinal cord white matter
UBERON:0026246
46
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical spinal cord dorsal horn
cervical spinal cord dorsal horn
UBERON:0014620
apex of cervical spinal cord dorsal horn
apex of cervical spinal cord dorsal horn
UBERON:0014622
47
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical spinal cord dorsal horn
cervical spinal cord dorsal horn
UBERON:0014620
substantia gelatinosa of cervical spinal cord dorsal horn
substantia gelatinosa of cervical spinal cord dorsal horn
UBERON:0014623
48
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical spinal cord gray matter
cervical spinal cord gray matter
UBERON:0014613
cervical spinal cord lateral horn
cervical spinal cord lateral horn
UBERON:0014619
49
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical spinal cord gray matter
cervical spinal cord gray matter
UBERON:0014613
cervical spinal cord ventral horn
cervical spinal cord ventral horn
UBERON:0014621
50
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical spinal cord gray matter
cervical spinal cord gray matter
UBERON:0014613
cervical spinal cord ventral commissure
cervical spinal cord ventral commissure
UBERON:0007836
51
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical spinal cord gray matter
cervical spinal cord gray matter
UBERON:0014613
cervical spinal cord gray commissure
cervical spinal cord gray commissure
UBERON:0029626
52
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical subsegment of spinal cord
cervical subsegment of spinal cord
UBERON:0007714
C1 segment of cervical spinal cord
C1 segment of cervical spinal cord
UBERON:0006469
53
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical subsegment of spinal cord
cervical subsegment of spinal cord
UBERON:0007714
C2 segment of cervical spinal cord
C2 segment of cervical spinal cord
UBERON:0006489
54
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical subsegment of spinal cord
cervical subsegment of spinal cord
UBERON:0007714
C3 segment of cervical spinal cord
C3 segment of cervical spinal cord
UBERON:0006488
55
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical subsegment of spinal cord
cervical subsegment of spinal cord
UBERON:0007714
C4 segment of cervical spinal cord
C4 segment of cervical spinal cord
UBERON:0006490
56
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical subsegment of spinal cord
cervical subsegment of spinal cord
UBERON:0007714
C5 segment of cervical spinal cord
C5 segment of cervical spinal cord
UBERON:0006491
57
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical subsegment of spinal cord
cervical subsegment of spinal cord
UBERON:0007714
C6 segment of cervical spinal cord
C6 segment of cervical spinal cord
UBERON:0006492
58
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical subsegment of spinal cord
cervical subsegment of spinal cord
UBERON:0007714
C7 segment of cervical spinal cord
C7 segment of cervical spinal cord
UBERON:0006493
59
spinal cordspinal cordUBERON:0002240
cervical spinal cord
cervical spinal cord
UBERON:0002726
cervical subsegment of spinal cord
cervical subsegment of spinal cord
UBERON:0007714
C8 segment of cervical spinal cord
C8 segment of cervical spinal cord
UBERON:0006470
60
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord gray commissure
lumbar spinal cord gray commissure
UBERON:0033483
61
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord ventral commissure
lumbar spinal cord ventral commissure
UBERON:0007834
62
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Dorsal Excitatory Neuron 1neuronCL:0000540MAFA
MAF bZIP transcription factor A
HGNC:23145MYO10myosin XHGNC:7593COL6A2
collagen type VI alpha 2 chain
HGNC:2212 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
63
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Dorsal Excitatory Neuron 2neuronCL:0000540MAFA
MAF bZIP transcription factor A
HGNC:23145CBLN1
cerebellin 1 precursor
HGNC:1543NR2F1
nuclear receptor subfamily 2 group F member 1
HGNC:7975 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
64
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Dorsal Excitatory Neuron 3neuronCL:0000540GABRB2
gamma-aminobutyric acid type A receptor subunit beta2
HGNC:4082NR2F1
nuclear receptor subfamily 2 group F member 1
HGNC:7975NTSneurotensinHGNC:8038 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
65
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Dorsal Excitatory Neuron 4neuronCL:0000540MAFA
MAF bZIP transcription factor A
HGNC:23145GABRB2
gamma-aminobutyric acid type A receptor subunit beta2
HGNC:4082MAF
MAF bZIP transcription factor
HGNC:6776 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
66
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Dorsal Excitatory Neuron 5neuronCL:0000540RELNreelinHGNC:9957PDE11A
phosphodiesterase 11A
HGNC:8773IQGAP2
IQ motif containing GTPase activating protein 2
HGNC:6112 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
67
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Dorsal Excitatory Neuron 6neuronCL:0000540RELNreelinHGNC:9957PDE11A
phosphodiesterase 11A
HGNC:8773NMUR2
neuromedin U receptor 2
HGNC:16454 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
68
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Dorsal Excitatory Neuron 7neuronCL:0000540TAC1
tachykinin precursor 1
HGNC:11517PDE11A
phosphodiesterase 11A
HGNC:8773NMUR2
neuromedin U receptor 2
HGNC:16454 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
69
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Dorsal Excitatory Neuron 8neuronCL:0000540SOX5
SRY-box transcription factor 5
HGNC:11201TAC1
tachykinin precursor 1
HGNC:11517IGF1
insulin like growth factor 1
HGNC:5464 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
70
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Dorsal Excitatory Neuron 9neuronCL:0000540SOX5
SRY-box transcription factor 5
HGNC:11201TAC1
tachykinin precursor 1
HGNC:11517CARTPT
CART prepropeptide
HGNC:24323 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
71
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Dorsal Excitatory Neuron 10neuronCL:0000540SOX5
SRY-box transcription factor 5
HGNC:11201TAC1
tachykinin precursor 1
HGNC:11517LMO3
LIM domain only 3
HGNC:6643 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
72
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Dorsal Excitatory Neuron 11neuronCL:0000540SOX5
SRY-box transcription factor 5
HGNC:11201NMUneuromedin UHGNC:7859ISM1isthmin 1HGNC:16213 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
73
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Dorsal Excitatory Neuron 12neuronCL:0000540SOX5
SRY-box transcription factor 5
HGNC:11201NMUneuromedin UHGNC:7859CALCB
calcitonin related polypeptide beta
HGNC:1438 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
74
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Dorsal Inhibitory Neuron 1neuronCL:0000540NR2F2
nuclear receptor subfamily 2 group F member 2
HGNC:7976CAPN8calpain 8HGNC:1485LINC01197
lymphatic endothelial transcriptional regulator lncRNA 1
HGNC:49597
lncRNA (long non-coding RNA)
https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
75
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Dorsal Inhibitory Neuron 2neuronCL:0000540PENKproenkephalinHGNC:8831CAPN8calpain 8HGNC:1485STK32B
serine/threonine kinase 32B
HGNC:14271 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
76
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Dorsal Inhibitory Neuron 3neuronCL:0000540RORB
RAR related orphan receptor B
HGNC:10259P2RY1
purinergic receptor P2Y1
HGNC:8539CBLN4
cerebellin 4 precursor
HGNC:16231 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
77
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Dorsal Inhibitory Neuron 4neuronCL:0000540ADARB2
adenosine deaminase RNA specific B2 (inactive)
HGNC:227CDHR3
cadherin related family member 3
HGNC:26308NFATC1
nuclear factor of activated T cells 1
HGNC:7775 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
78
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Dorsal Inhibitory Neuron 5neuronCL:0000540ADARB2
adenosine deaminase RNA specific B2 (inactive)
HGNC:227CDHR3
cadherin related family member 3
HGNC:26308CDH7cadherin 7HGNC:1766 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
79
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Dorsal Inhibitory Neuron 6neuronCL:0000540PDYNprodynorphinHGNC:8820RORB
RAR related orphan receptor B
HGNC:10259SULF1sulfatase 1HGNC:20391 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
80
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Dorsal Inhibitory Neuron 7neuronCL:0000540PDYNprodynorphinHGNC:8820LEF1
lymphoid enhancer binding factor 1
HGNC:6551CCK
cholecystokinin
HGNC:1569 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
81
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Dorsal Inhibitory Neuron 8neuronCL:0000540PDYNprodynorphinHGNC:8820RORB
RAR related orphan receptor B
HGNC:10259PROX1
prospero homeobox 1
HGNC:9459 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
82
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Dorsal Inhibitory Neuron 9neuronCL:0000540NPY
neuropeptide Y
HGNC:7955SAMD3
sterile alpha motif domain containing 3
HGNC:21574HMCN1hemicentin 1HGNC:19194 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
83
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Oligodendrocyte
Oligodendrocyte
CL:0000128MOG
myelin oligodendrocyte glycoprotein
HGNC:7197 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
84
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
AstrocyteAstrocyteCL:0000127SLC14A1
solute carrier family 14 member 1 (Kidd blood group)
HGNC:10918 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
85
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Microgliamicroglial cellCL:0000129AIF1
allograft inflammatory factor 1
HGNC:352IBA1
ionized calcium-binding adapter molecule 1
HGNC:352
Protein for gene AIF1
https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
86
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord dorsal horn
lumbar spinal cord dorsal horn
UBERON:0014638
Endothelial CellEndothelial CellCL:0000115CLDN5claudin 5HGNC:2047 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
87
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord ventral horn
lumbar spinal cord ventral horn
UBERON:0030276
Ventral Excitatory Neuron 1neuronCL:0000540ZFHX3
zinc finger homeobox 3
HGNC:777POU6F2
POU class 6 homeobox 2
HGNC:21694ONECUT2
one cut homeobox 2
HGNC:8139 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
88
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord ventral horn
lumbar spinal cord ventral horn
UBERON:0030276
Ventral Excitatory Neuron 2neuronCL:0000540ZFHX3
zinc finger homeobox 3
HGNC:777FOXP2
forkhead box P2
HGNC:13875RNF220
ring finger protein 220
HGNC:25552 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
89
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord ventral horn
lumbar spinal cord ventral horn
UBERON:0030276
Ventral Excitatory Neuron 3neuronCL:0000540ZFHX3
zinc finger homeobox 3
HGNC:777CDH9cadherin 9HGNC:1768NR4A2
nuclear receptor subfamily 4 group A member 2
HGNC:7981 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
90
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord ventral horn
lumbar spinal cord ventral horn
UBERON:0030276
Ventral Excitatory Neuron 1neuronCL:0000540ZFHX3
zinc finger homeobox 3
HGNC:777POU6F2
POU class 6 homeobox 2
HGNC:21694ONECUT2
one cut homeobox 2
HGNC:8139 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
91
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord ventral horn
lumbar spinal cord ventral horn
UBERON:0030276
Ventral Inhibitory Neuron 1neuronCL:0000540NFIX
nuclear factor I X
HGNC:7788PROX1
prospero homeobox 1
HGNC:9459 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
92
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord ventral horn
lumbar spinal cord ventral horn
UBERON:0030276
Ventral Inhibitory Neuron 2neuronCL:0000540ZFHX3
zinc finger homeobox 3
HGNC:777FOXP2
forkhead box P2
HGNC:13875GATA3
GATA binding protein 3
HGNC:4172 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
93
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord ventral horn
lumbar spinal cord ventral horn
UBERON:0030276
Ventral Inhibitory Neuron 3neuronCL:0000540ZFHX3
zinc finger homeobox 3
HGNC:777ASAH2
N-acylsphingosine amidohydrolase 2
HGNC:18860GAS1RR
GAS1 adjacent regulatory RNA
HGNC:52261 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
94
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord ventral horn
lumbar spinal cord ventral horn
UBERON:0030276
motor neuronmotor neuronCL:0000100SNAP25
synaptosome associated protein 25
HGNC:11132PRPHperipherinHGNC:9461
Gene + Protein in cell types
PRPHperipherinHGNC:9461
Gene + Protein in cell types
https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
95
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord ventral horn
lumbar spinal cord ventral horn
UBERON:0030276
Oligodendrocyte
Oligodendrocyte
CL:0000128MOG
myelin oligodendrocyte glycoprotein
HGNC:7197 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
96
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord ventral horn
lumbar spinal cord ventral horn
UBERON:0030276
AstrocyteAstrocyteCL:0000127SLC14A1
solute carrier family 14 member 1 (Kidd blood group)
HGNC:10918 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
97
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord ventral horn
lumbar spinal cord ventral horn
UBERON:0030276
Microgliamicroglial cellCL:0000129AIF1
allograft inflammatory factor 1
HGNC:352IBA1
ionized calcium-binding adapter molecule 1
HGNC:352
Protein for gene AIF1
https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
98
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord ventral horn
lumbar spinal cord ventral horn
UBERON:0030276
Endothelial CellEndothelial CellCL:0000115CLDN5claudin 5HGNC:2047 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
99
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord lateral horn
lumbar spinal cord lateral horn
UBERON:0031906
Medial Excitatory Neuron 1neuronCL:0000540ZFHX3
zinc finger homeobox 3
HGNC:777TAC1
tachykinin precursor 1
HGNC:11517LMX1B
LIM homeobox transcription factor 1 beta
HGNC:6654 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007
100
spinal cordspinal cordUBERON:0002240
lumbar spinal cord
lumbar spinal cord
UBERON:0002792
lumbar spinal cord gray matter
lumbar spinal cord gray matter
UBERON:0029636
lumbar spinal cord lateral horn
lumbar spinal cord lateral horn
UBERON:0031906
Medial Excitatory Neuron 2neuronCL:0000540NFIX
nuclear factor I X
HGNC:7788SATB2
SATB homeobox 2
HGNC:21637TAC3
tachykinin precursor 3
HGNC:11521 https://doi.org/10.1016/j.neuron.2023.01.007 https://doi.org/10.1016/j.neuron.2023.01.007
Yadav, Matson et al. (2023) https://doi.org/ https://doi.org/10.1016/j.neuron.2023.01.007