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GANTT CHARThttps://goo.gl/PXLbMe
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PROJECT TITLECancer classification with cell-free DNA methylation data
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PHASE ONEPHASE TWOPHASE THREE
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TASK TITLETASK OWNERSTART DATEDUE DATEDURATIONJan 15Jan 22Jan 29Feb 5Feb 12Feb 19Feb 26Mar 4Mar 11Mar 18Mar 25Apr 1Apr 8Apr 15
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MTWRFSUMTWRFSUMTWRFSUMTWRFSUMTWRFSUMTWRFSUMTWRFSUMTWRFSUMTWRFSUMTWRFSUMTWRFSUMTWRFSUMTWRFSUMTW
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Project Team CompositionAll1/17/242/9/2422Spring Break
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Project ProposalDue 2/23/24
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Introduction & BackgroundAnna2/2/242/19/2417
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Problem DefinitionAnna2/2/242/19/2417
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MethodsAnna, Ling2/2/242/19/2417
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Potential DatasetAnna2/2/242/19/2417
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Potential Results & DiscussionLing2/2/242/19/2417
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Gantt ChartAll2/2/242/19/2417
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Video Creation & RecordingMehak, Jayda & Meenakshi2/19/242/22/243
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GitHub Page/ websiteAnna, Ling, Mehak2/19/242/22/243
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Midterm ReportDue: 3/29/24
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Data cleaning, harmonization, quality controlMeenakshi, Anna, Ling2/23/243/4/2411
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Feature selection (Var thd + univariate selection)Ling2/23/243/4/2411
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Dimension reduction and visualization(PCA)Meenakshi3/4/243/17/2413
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Dimension reduction and visualization(PLS)Ling3/4/243/17/2413
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Dimension reduction and visualization(UMAP)Mehak3/4/243/17/2413
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Unsupervised models (KMeans, DBSCAN) + external metricsJayda3/4/243/17/2413
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Unsupervised models (Hierarchical) + external metricsMehak3/4/243/17/2413
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Unsupervised models (GMM) + external metricsAnna3/4/243/17/2413
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Data VisualizationMehak, Jayda, Anna3/4/243/17/2413
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Results EvaluationJayda, Mehak, Anna3/4/243/17/2413
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Midterm github updatesMehak, Ling, Anna3/25/243/29/244
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Midterm ReportAll3/25/243/29/244
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Final ReportDue: 4/23/24
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DeSeq Feature SelectionAnna3/30/244/21/2421
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Supervised models (RF, LR)Jayda, Ling3/30/244/21/2421
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Sequential ModelMehak3/30/244/21/2421
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SMOTE Data AugmentationJayda3/30/244/21/2421
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Feature ImportanceMeenakshi3/30/244/21/2421
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Video Creation & RecordingMehak, Jayda, Meenakshi4/21/244/23/242
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Final github updatesAnna, Ling, Meenakshi4/21/244/23/242
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Final ReportAll4/21/244/23/242
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