ReferenceLeptoGenomes.xlsx

	A	B	C	D	E	F	G	H	I	J	K	L	M
1	Species	Serovar	Strain	Clade	RefSeq	Country	Source	Contigs	Size	N50	L50	GC_%	Comment
2	L_alexanderi	Manhao3	L60	P1	GCF_000243815.2	China	Human	63	4223089	156869	10	40.2
3	L_alstonii	Pinchang	80-412	P1	GCF_000332555.2	China	Amphibian	67	4437303	152980	11	42.5
4	L_borgpetersenii	Hardjo-bovis	L550	P1	GCF_000013945.1	Australia	Human	2	3931782	3614446	1	40.23
5	L_interrogans	Lai	56601	P1	GCF_000092565.1	China	Human	2	4698134	4338762	1	35.02
6	L_kirschneri	Valbuzzi	200702274	P1	GCF_000244515.1	France	Human	22	4317431	359987	5	35.89
7	L_mayottensis		200901116	P1	GCA_000306675.3	Mayotte	Human	67	4135276	170450	7	39.49
8	L_noguchii	Panama	CZ 214T	P1	GCF_000306255.2	Panama	Other mammal	35	4710917	280299	6	35.54
9	L_santarosai	Shermani	LT821	P1	GCF_000313175.2	Panama	Rat	2	3983611	3659905	1	41.82
10	L_weilii	Topaz	LT2116	P1	GCF_000244815.1	Australia	Human	83	4323312	141068	10	40.46
11	L_kmetyi	Malaysia	Bejo-Iso9	P1	GCF_000243735.2	Malaysia	Environment	4	4418431	3808637	1	44.82
12	L_ellisii		AT17-C-A5	P1	GCA_002811955.2	New Caledonia	Environment	68	4302282	190896	8	47.5	NPEF00000000.2 (new accession number)
13	L_barantonii		FH4-C-A1	P1	GCF_002811925.1	New Caledonia	Environment	17	4392226	347630	4	43.96
14	L_adleri		FH2-B-C1	P1	GCF_002811845.1	New Caledonia	Environment	51	4388198	202560	8	43.82
15	L_gomenensis		201800299	P1	GCF_004770605.1	New Caledonia	Environment	72	4276968	211316	8	46.12
16	L_tipperaryensis		GWTS	P1	GCF_001729245.1	Ireland	Other mammal	2	4591888	4105414	1	42.42
17	L_stimsonii		Yale	P1	GCF_003545885.1	USA	Freshwater	43	4836182	623593	3	42.65	L_putramalaysiae as later heterotypic synonym
18	L_yasudae		F1	P1	GCF_003545925.1	Brazil	Environment	24	4444162	589757	3	45.49	L_dzianensis as later heterotypic synonym
19	L_ainazelensis		201903071	P1	GCF_016918785.1	Algeria	Freshwater	78	4859235	199138	8	42.62
20	L_ainlahdjerensis		201903070	P1	GCF_016919175.1	Algeria	Freshwater	84	4842371	127634	13	42.54
21	L_sanjuanensis		LGVF02	P1	GCF_022267325.1	Puerto Rico	Environment	3	4503289	3958157	1	45.06
22	L. gorisiae		WS92.C1	P1	GCA_040833975.1	USA	Freshwater	3	4527809	4056702	1	41.5
23	L_broomii	Hurstbridge	5399	P2	GCF_000243715.2	Denmark	Human	12	4395904	2457338	1	42.99
24	L_fainei	Hurstbridge	BUT6	P2	GCF_000306235.2	Australia	Pig	13	4287324	579278	2	43.53
25	L_inadai	Lyme	10	P2	GCF_000243675.2	USA	Human	26	4457485	810442	3	44.61
26	L_licerasiae	Varillal	VAR010	P2	GCF_000244755.1	Peru	Human	13	4210826	553148	2	41.13
27	L_wolffii	Khorat	Khorat-H2	P2	GCF_000306115.2	Thailand	Human	23	4400835	916783	3	45.58
28	L_venezuelensis		CLM-R50	P2	GCF_002150055.1	Venezuela	Human	21	4308115	896129	2	39.19
29	L_haakeii		AT17-C-A2	P2	GCF_002812225.1	New Caledonia	Soil	37	4191631	324807	4	39.81
30	L_hartskeerlii		MCA1-C-A1	P2	GCF_002811505.1	New Caledonia	Soil	31	4048089	406654	4	40.47
31	L_neocaledonica		ES4-C-A1	P2	GCF_002812205.1	New Caledonia	Soil	38	4213808	452736	5	40.17
32	L_perolatii		FH1-B-B1	P2	GCF_002811875.1	New Caledonia	Soil	49	3985918	332586	4	42.36
33	L_saintgironsiae		FH4-C-A2	P2	GCF_002811765.1	Malaysia	Environment	42	4083319	551160	3	39.11
34	L_andrefontaineae		201800301	P2	GCF_004770105.1	New Caledonia	Environment	26	4280350	460372	4	39.94
35	L_dzoumogneensis		201601113	P2	GCF_004770895.1	Mayotte	Environment	28	4118320	585855	3	40.99
36	L_fletcheri		SCW15	P2	GCF_004769195.1	Malaysia	Environment	14	3733663	474571	2	47.35
37	L_fluminis		SCS5	P2	GCF_004771275.1	Malaysia	Environment	18	3746420	325090	4	47.7
38	L_johnsonii		E8	P2	GCF_003112675.1	Japan	Environment	20	4063992	508309	2	41.26
39	L_koniamboensis		201800265	P2	GCF_004769555.1	New Caledonia	Environment	12	4319728	868904	2	38.97
40	L_langatensis		SCW18	P2	GCF_004769595.1	Malaysia	Environment	11	4089386	548229	4	44.79
41	L_sarikeiensis		201702455	P2	GCF_004769615.1	Malaysia	Environment	44	4373171	278101	5	40.27
42	L_selangorensis		SCW17	P2	GCF_004769405.1	Malaysia	Environment	27	4189721	523715	4	39.99
43	L_semungkikensis		SSS9	P2	GCF_004770055.1	Malaysia	Environment	22	3942365	832702	2	42.76
44	L. cinconiae		WS58.C1	P2	GCF_040833995.1	USA	Freshwater	2	4092442	3719482	1	41.76
45	L_biflexa	Patoc	Patoc 1 (Patoc)	S1	GCF_000017685.1	Italy	Environment	3	3951448	3599677	1	38.89
46	L_yanagawae	Saopaulo	ATCC700523	S1	GCF_000332475.2	Brazil	Environment	47	4056240	330086	3	38.23
47	L_levettii		MCA2-B-A1	S1	GCF_002812085.1	New Caledonia	Environment	14	3875926	772998	2	37.61
48	L_bouyouniensis		201601297	S1	GCF_004770445.1	Mayotte	Environment	26	4099581	942431	2	37.06
49	L_ellinghausenii		E18	S1	GCF_003114815.1	Japan	Environment	27	4193578	397404	2	37.35
50	L_jelokensis		201702419	S1	GCF_004769775.1	Malaysia	Environment	42	4123596	800878	2	38.9
51	L_kemamanensis		201702454	S1	GCF_004769665.1	Malaysia	Environment	49	3768471	224302	6	38.9
52	L_meyeri	Hardjo	Went5	S1	GCF_000304275.1	Canada	Unknown	7	4188061	2478877	1	38.03
53	L_terpstrae	Hualin	LT 11-33 = ATCC 700639	S1	GCF_000332495.1	China	Environment	23	4092188	372285	3	38.21
54	L_vanthielii	Holland	WaZ Holland = ATCC 700522	S1	GCF_000332455.1	Netherlands	Environment	89	4232327	164554	9	38.9
55	L_wolbachii	Codice	CDC	S1	GCF_000332515.2	USA	Environment	25	4081981	2540234	1	39.15
56	L_brenneri		JW2-C-A2	S1	GCF_002812125.1	New Caledonia	Environment	33	4113151	489086	4	38.34
57	L_harrisiae		FH2-B-A1	S1	GCF_002811945.1	New Caledonia	Environment	17	3946761	2088660	1	37.86
58	L_bandrabouensis		201601111	S1	GCF_004770905.1	Mayotte	Environment	18	4027080	2180649	1	37.88
59	L_bourretii		201800280	S1	GCF_004769285.1	New Caledonia	Environment	29	4234564	708835	2	38.24
60	L_congkakensis		201702421	S1	GCF_004770265.1	Malaysia	Environment	24	4003841	682760	3	38.23
61	L_kanakyensis		201800292	S1	GCF_004769235.1	New Caledonia	Environment	26	4137313	1010756	2	38.5
62	L_montravelensis		201800279	S1	GCF_004769455.1	New Caledonia	Environment	35	4082263	1385913	2	37.4
63	L_mtsangambouensis		201601298	S1	GCF_004770475.1	Mayotte	Environment	17	4083444	1411831	2	38.2
64	L_noumeaensis		201800287	S1	GCF_004770765.1	New Caledonia	Environment	39	4107975	616770	2	38.29
65	L_perdikensis		201702692	S1	GCF_004769575.1	Malaysia	Environment	19	4001187	832751	2	38.5
66	L_abararensis		201903074	S1	GCF_016918735.1	Algeria	Freshwater	63	4175829	191231	7	39.09
67	L_chreensis		201903075	S1	GCF_016919165.1	Algeria	Freshwater	73	4487015	122992	11	39.78
68	L. mgodei		WS4.C2	S1	GCF_040833985.1	USA	Freshwater	3	4041414	3711287	1	39
69	L. iowaensis		WS39.C2	S1	GCF_040833965.1	USA	Freshwater	3	4065238	3720064	1	37
70	L. milleri		WS60.C2	S1	GCF_040833955.1	USA	Freshwater	4	3873836	3436525	1	38.7
71	L_idonii		201300427	S2	GCF_004770995.1	Japan	Environment	78	4086283	195150	7	41.15
72	L_ilyithenensis		201400974	S2	GCF_004771005.1	Algeria	Environment	63	4207523	266913	5	40.54
73	L_kobayashii		E30	S2	GCF_003114835.1	Japan	Environment	25	4294786	382600	4	40.68
74	L_ognonensis		201702476	S2	GCF_004770745.1	France	Environment	60	3987421	305521	5	39.66
75	L_ryugenii		YH101	S2	GCF_003114855.1	Japan	Environment	24	3951395	715814	3	39.92
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