Staphopia_short_DNA_sequence_blast_database

	A	B	C	D	E	F	G	H	I	J	K	L
1	Include_bactopia	Phenotype (or genotype) name	PMID(s) (comma sep)	Description	Fasta_header	Sequence	String length	N315_coords (start..end)	Length_thresh	Percent_thresh	Evalue_thresh	Bitscore_thresh

2	1	mucoid	12753184,27902780	5 bp deletion between icaA and icaD that gives mucoid phenotype	del_icaR-icaA	ttgcaattacaaaccgtt	18	-1	18	100	NA	NA
3	1	ica_wt	12753184,27902780	Wild type sequence of icaR-icaA region that can contain deletions	wt_icaR-icaA	ttgcaattacaaatatttccgtt	23	2770387..2770409	22	98	NA	NA
4	1	phageSa1	19325640	PCR primer specific for phageSa1	Sa1-F	AAGCTAAGTTCGGGCACA	18	-1	16	90	NA	NA
5	1	phageSa1	19325640	PCR primer specific for phageSa1	Sa1-R	GTAATGTTTGGGAGCCAT	18	NA	16	90	NA	NA
6	1	phageSa2	19325640	PCR primer specific for phageSa2	Sa2-F	TCAAGTAACCCGTCAACTC	19	-1	16	90	NA	NA
7	1	phageSa2	19325640	PCR primer specific for phageSa2	Sa2-R	ATGTCTAAATGTGTGCGTG	19	NA	16	90	NA	NA
8	1	phageSa3	19325640	PCR primer specific for phageSa3	Sa3-F	GAAAAACAAACGGTGCTAT	19	2048847..2048865	16	90	NA	NA
9	1	phageSa3	19325640	PCR primer specific for phageSa3	Sa3-R	TTATTGACTCTACAGGCTGA	20	2049321..2049302	16	90	NA	NA
10	1	phageSa4	19325640	PCR primer specific for phageSa4	Sa4-F	ATTGATATTAACGGAACTC	19	NA	16	90	NA	NA
11	1	phageSa4	19325640	PCR primer specific for phageSa4	Sa4-R	TAAACTTATATGCGTGTGT	19	NA	16	90	NA	NA
12	1	phageSa5	19325640	PCR primer specific for phageSa5	Sa5-F	AAAGATGCCAAACTAGCTG	19	NA	16	90	NA	NA
13	1	phageSa5	19325640	PCR primer specific for phageSa5	Sa5-R	CTTGTGGTTTTGTTCTGG	19	NA	16	90	NA	NA
14	1	phageSa6	19325640	PCR primer specific for phageSa6	Sa6-F	GCCATCAATTCAAGGATAG	19	NA	16	90	NA	NA
15	1	phageSa6	19325640	PCR primer specific for phageSa6	Sa6-R	TCTGCAGCTGAGGACAAT	19	NA	16	90	NA	NA
16	1	phageSa7	19325640	PCR primer specific for phageSa7	Sa7-F	GTCCGGTAGCTAGAGGTC	18	NA	16	90	NA	NA
17	1	phageSa7	19325640	PCR primer specific for phageSa7	Sa7-R	GGCGTATGCTTGACTGTGT	19	NA	16	90	NA	NA
18	1	agr	12517893	PCR primer conserved binding for agr genes across S. aureus	pan-agr	ATGCACATGGTGCACATGC	19	2079660..2079678	19	100	NA	NA
19	1	agrI	12512792	PCR primer specific for agr subtype I	agrI-PMC149583	GTCACAAGTACTATAAGCTGCGAT	24	NA	24	100	NA	NA
20	1	agrII	12517893	PCR primer specific for agr subtype II	agrII-PMC152380	TATTACTAATTGAAAAGTGCCATAGC	26	NA	26	100	NA	NA
21	1	agrII	12512792	PCR primer specific for agr subtype II	agrII-PMC149583	GTATTACTAATTGAAAAGTGCCATAGC	27	NA	27	100	NA	NA
22	1	agrIII	12512792	PCR primer specific for agr subtype III	agrIII-PMC152380	GTAATGTAATAGCTTGTATAATAATACCCAG	31	NA	31	100	NA	NA
23	1	agrIII	12517893	PCR primer specific for agr subtype III	agrIII-PMC149583	CTGTTGAAAAAGTCAACTAAAAGCTC	26	NA	26	100	NA	NA
24	1	agrIV	12517893	PCR primer specific for agr subtype IV	agrIV-PMC149583	CGATAATGCCGTAATACCCG	20	NA	20	100	NA	NA
25	1	sea	11796592	PCR primer specfic for Sea enterotoxin	SEA-1	GAAAAAAGTCTGAATTGCAGGGAACA	26	NA	NA	100	NA	NA
26	1	sea	11796592	PCR primer specfic for Sea enterotoxin	SEA-2	CAAATAAATCGTAATTAACCGAAGGTTC	28	NA	NA	100	NA	NA
27	1	seb	11796592	PCR primer specfic for Seb enterotoxin	SEB-1	ATTCTATTAAGGACACTAAGTTAGGGA	27	NA	NA	100	NA	NA
28	1	seb	11796592	PCR primer specfic for Seb enterotoxin	SEB-2	ATCCCGTTTCATAAGGCGAGT	21	NA	NA	100	NA	NA
29	1	sec	11796592	PCR primer specfic for Sec enterotoxin	mpSEC-1	GTAAAGTTACAGGTGGCAAAACTTG	25	NA	NA	100	NA	NA
30	1	sec	11796592	PCR primer specfic for Sec enterotoxin	mpSEC-2	CATATCATACCAAAAAGTATTGCCGT	26	NA	NA	100	NA	NA
31	1	sed	11796592	PCR primer specfic for Sed enterotoxin	SED-1	GAATTAAGTAGTACCGCGCTAAATAATATG	30	NA	NA	100	NA	NA
32	1	sed	11796592	PCR primer specfic for Sed enterotoxin	SED-2	GCTGTATTTTTCCTCCGAGAGT	22	NA	NA	100	NA	NA
33	1	see	11796592	PCR primer specfic for See enterotoxin	SEE-1	CAAAGAAATGCTTTAAGCAATCTTAGGC	28	NA	NA	100	NA	NA
34	1	see	11796592	PCR primer specfic for See enterotoxin	SEE-2	CACCTTACCGCCAAAGCTG	19	NA	NA	100	NA	NA
35	1	seg	11796592	PCR primer specfic for Seg enterotoxin	SEG-1	AATTATGTGAATGCTCAACCCGATC	25	NA	NA	100	NA	NA
36	1	seg	11796592	PCR primer specfic for Seg enterotoxin	SEG-2	AAACTTATATGGAACAAAAGGTACTAGTTC	30	NA	NA	100	NA	NA
37	1	seh	11796592	PCR primer specfic for Seh enterotoxin	SEH-1	CAATCACATCATATGCGAAAGCAG	24	NA	NA	100	NA	NA
38	1	seh	11796592	PCR primer specfic for Seh enterotoxin	SEH-2	CATCTACCCAAACATTAGCACC	22	NA	NA	100	NA	NA
39	1	sei	11796592	PCR primer specfic for Sei enterotoxin	SEI-1	CTCAAGGTGATATTGGTGTAGG	22	NA	NA	100	NA	NA
40	1	sei	11796592	PCR primer specfic for Sei enterotoxin	SEI-2	AAAAAACTTACAGGCAGTCCATCTC	25	NA	NA	100	NA	NA
41	1	sej	11796592	PCR primer specfic for Sej enterotoxin	mpSEJ-1	TAACCTCAGACATATATACTTCTTTAACG	29	NA	NA	100	NA	NA
42	1	sej	11796592	PCR primer specfic for Sej enterotoxin	mpSEJ-2	AGTATCATAAAGTTGATTGTTTTCATGCAG	30	NA	NA	100	NA	NA
43	1	sen	11796592	PCR primer specfic for Sen enterotoxin	mpSEN-1	ATGAGATTGTTCTACATAGCTGCAAT	26	NA	NA	100	NA	NA
44	1	sen	11796592	PCR primer specfic for Sen enterotoxin	mpSEN-2	AACTCTGCTCCCACTGAAC	19	NA	NA	100	NA	NA
45	1	seo	11796592	PCR primer specfic for Seo enterotoxin	mpSEO-1	AGTTTGTGTAAGAAGTCAAGTGTAGA	26	NA	NA	100	NA	NA
46	1	seo	11796592	PCR primer specfic for Seo enterotoxin	mpSEO-2	ATCTTTAAATTCAGCAGATATTCCATCTAAC	31	NA	NA	100	NA	NA
47	1	sem	11796592	PCR primer specfic for Sem enterotoxin	mpSEM-1	CTATTAATCTTTGGGTTAATGGAGAAC	27	NA	NA	100	NA	NA
48	1	sem	11796592	PCR primer specfic for Sem enterotoxin	mpSEM-2	TTCAGTTTCGACAGTTTTGTTGTCAT	26	NA	NA	100	NA	NA
49	1	tst	11796592	PCR primer specfic for TSST-1 toxin shock syndrome toxin	TST-1	TTCACTATTTGTAAAAGTGTCAGACCCACT	30	NA	NA	100	NA	NA
50	1	tst	11796592	PCR primer specfic for TSST-1 toxin shock syndrome toxin	TST-2	TACTAATGAATTTTTTTATCGTAAGCCCTT	30	NA	NA	100	NA	NA
51	1	eta	11796592	PCR primer specfic for exfoliative toxin A	mpETA-1	ACTGTAGGAGCTAGTGCATTTGT	23	NA	NA	100	NA	NA
52	1	eta	11796592	PCR primer specfic for exfoliative toxin A	mpETA-3	TGGATACTTTTGTCTATCTTTTTCATCAAC	30	NA	NA	100	NA	NA
53	1	etb	11796592	PCR primer specfic for exfoliative toxin B	mpETB-1	CAGATAAAGAGCTTTATACACACATTAC	28	NA	NA	100	NA	NA
54	1	etb	11796592	PCR primer specfic for exfoliative toxin B	mpETB-2	AGTGAACTTATCTTTCTATTGAAAAACACTC	31	NA	NA	100	NA	NA
55	1	lukS-PV–	11796592	PCR primer specfic for Panton-Valentin Leukocidin (PVL) components S and F	PVL-1	ATCATTAGGTAAAATGTCTGGACATGATCCA	31	NA	NA	100	NA	NA
56	1	lukF-PV	11796592	PCR primer specfic for Panton-Valentin Leukocidin (PVL) components S and F	NPVL-2	GCATCAASTGTATTGGATAGCAAAAGC	27	NA	NA	100	NA	NA
57	1	lukE-lukD	11796592	PCR primer specfic for Panton-Valentin Leukocidin (PVL) components S and F	LUKDE-1	TGAAAAAGGTTCAAAGTTGATACGAG	26	NA	NA	100	NA	NA
58	1	lukE-lukD	11796592	PCR primer specfic for Panton-Valentin Leukocidin (PVL) components S and F	LUKDE-2	TGTATTCGATAGCAAAAGCAGTGCA	25	NA	NA	100	NA	NA
59	1	lukM	11796592	PCR primer specfic for Panton-Valentin Leukocidin (PVL)	LUKM-1	TGGATGTTACCTATGCAACCTAC	23	NA	NA	100	NA	NA
60	1	lukM	11796592	PCR primer specfic for Panton-Valentin Leukocidin (PVL)	LUKM-2	GTTCGTTTCCATATAATGAATCACTAC	27	NA	NA	100	NA	NA
61	1	hla	11796592	PCR primer specfic for alpha-Hemolysin	HLA-1	CTGATTACTATCCAAGAAATTCGATTG	27	NA	NA	100	NA	NA
62	1	hla	11796592	PCR primer specfic for alpha-Hemolysin	HLA-2	CTTTCCAGCCTACTTTTTTATCAGT	25	NA	NA	100	NA	NA
63	1	hlb	11796592	PCR primer specfic for beta-Hemolysin	HLB-1	GTGCACTTACTGACAATAGTGC	22	NA	NA	100	NA	NA
64	1	hlb	11796592	PCR primer specfic for beta-Hemolysin	HLB-2-2	GTTGATGAGTAGCTACCTTCAGT	23	NA	NA	100	NA	NA
65	1	hld	11796592	PCR primer specfic for delta-Hemolysin	HLD-1	AAGAATTTTTATCTTAATTAAGGAAGGAGTG	31	NA	NA	100	NA	NA
66	1	hld	11796592	PCR primer specfic for delta-Hemolysin	HLD-2	TTAGTGAATTTGTTCACTGTGTCGA	25	NA	NA	100	NA	NA
67	1	hlg	11796592	PCR primer specfic for gamma-Hemolysin components A,B and C	mpHLG-1	GTCAYAGAGTCCATAATGCATTTAA	25	NA	NA	100	NA	NA
68	1	hlg	11796592	PCR primer specfic for gamma-Hemolysin components A,B and C	mpHLG-2	CACCAAATGTATAGCCTAAAGTG	23	NA	NA	100	NA	NA
69	1	hlg-2	11796592	PCR primer specfic for gamma-Hemolysin variant	mpHLG2-1	GACATAGAGTCCATAATGCATTYGT	25	NA	NA	100	NA	NA
70	1	hlg-2	11796592	PCR primer specfic for gamma-Hemolysin variant	mpHLG2-2	ATAGTCATTAGGATTAGGTTTCACAAAG	28	NA	NA	100	NA	NA
71	1	edin	11796592	PCR primer specfic for epidermal cell differentiation inhibitor	EDIN-1	GAAGTATCTAATACTTCTTTAGCAGC	26	NA	NA	100	NA	NA
72	1	edin	11796592	PCR primer specfic for epidermal cell differentiation inhibitor	EDIN-2	TCATTTGACAATTCTACACTTCCAAC	26	NA	NA	100	NA	NA
73		?	29720527	PCR primer specific for CC8 assay	tCC8_F	CGAGTCAGCTAGTGGTCCGTT	21	NA	21	100	NA	NA
74		?	29720527	PCR primer specific for CC8 assay	tCC8_R	ATGCATAGCTCTTGCTAAAGTGTA	24	NA	24	100	NA	NA
75	1	CC8+	29720527	PCR primer specific for larger CC8	tCC8-A_FB+	ACCTATACCTGAACGTCAA	19	NA	19	100	NA	NA
76	1	CC8-	29720527	PCR primer specific for strains not in CC8	non-tCC8-G_TB+	CTATACCTGAGCGTCAAA	18	NA	18	100	NA	NA
77		?	29720527	PCR primer specific for "inner" CC8 assay (excluding ST239 and ST639)	inCC8_F	TGCCCATAACACATTTGACACTTT	24	NA	24	100	NA	NA
78		?	29720527	PCR primer specific for "inner" CC8 assay (excluding ST239 and ST639)	inCC8_R1	TTCGGCCACAGCTAAACTCG	20	NA	20	100	NA	NA
79		?	29720527	PCR primer specific for "inner" CC8 assay (excluding ST239 and ST639)	inCC8_R2	GTTCGGCTACAGCTAAACTTGC	22	NA	22	100	NA	NA
80	1	inner CC8+	29720527	PCR primer specific for "inner" CC8 (excluding ST239 and ST639)	inCC8_FB+	ATCGGACCCGGTAACC	16	NA	16	100	NA	NA
81	1	inner CC8-	29720527	PCR primer specific for strains not in "inner" CC8 (CC8 excluding ST239 and ST639)	non-inCC8_TB+	TAATCGGACCTGGTAACC	18	NA	18	100	NA	NA
82		?	29720527	PCR primer specific for CC8a assay	CC8a_F	CGCCAAATGACTCGCATTGT	20	NA	20	100	NA	NA
83		?	29720527	PCR primer specific for CC8a assay	CC8a_R	GCATGTGCCTTTCCGAARTAAA	22	NA	22	100	NA	NA
84	1	CC8a+	29720527	PCR primer specific for CC8a	CC8a-C_FB+	ATTACTGTAGCAGGGCTG	18	NA	18	100	NA	NA
85	1	CC8a-	29720527	PCR primer specific for non CC8a strains	nonCC8a-T_TB+	CTGTAGCAGGGTTGC	15	NA	15	100	NA	NA
86		?	29720527	PCR primer specific for CC8b assay	CC8b_F	GATGACGTGATAACTGTACGTSGAT	25	NA	25	100	NA	NA
87		?	29720527	PCR primer specific for CC8b assay	CC8b_R	CGCGATTGAGGGTGAATATTGC	22	NA	22	100	NA	NA
88	1	CC8b+	29720527	PCR primer specific for CC8b	CC8b-C_FB+	AAGCTAACAAAATCACCTACTG	22	NA	22	100	NA	NA
89	1	CC8b-	29720527	PCR primer specific for non CC8b strains	nonCC8b-T_TB+	CAAAGCTAACAAAATTACCTAC	22	NA	22	100	NA	NA
90		?	29720527	PCR primer specific for CC8c assay (includes USA500)	NewIber_F	GCGCAACAGGGAAGCAA	17	NA	17	100	NA	NA
91		?	29720527	PCR primer specific for CC8c assay (includes USA500)	NewIber_R	TGCGGATGTCCTATGTCTGAAAG	23	NA	23	100	NA	NA
92	1	CC8c+	29720527	PCR primer specific for CC8c (includes USA500)	NewIber-T_FB+	TGCACTTACATATCATCCAT	20	NA	20	100	NA	NA
93	1	CC8c-	29720527	PCR primer specific for non CC8c (CC8c includes USA500)	nonNewIber-C_TB+	CACTTACATACCATCCATC	19	NA	19	100	NA	NA
94		?	29720527	PCR primer specific for CC8ec assay (includes USA500, early branching USA300 and USA300-SAE)	CC8e_F	ACCTTATACRGAACATAGCAGACG	24	NA	24	100	NA	NA
95		?	29720527	PCR primer specific for CC8ec assay (includes USA500, early branching USA300 and USA300-SAE)	CC8e_R	TCGATGCGCTTCTATCACTTC	21	NA	21	100	NA	NA
96	1	CC8ec+	29720527	PCR primer specific for CC8ec (includes USA500, early branching USA300 and USA300-SAE)	CC8e-C_FB+	TATTAGATGAAGGCCTCAATA	21	NA	21	100	NA	NA
97	1	CC8ec-	29720527	PCR primer specific for non CC8ec strains (CC8ec includes USA500)	nonCC8e-T_TB+	TTTATTAGATGAAGGCTTCAATA	23	NA	23	100	NA	NA
98		?	29720527	PCR primer specific for CC8fc assay (includes USA300-NAE)	CC8f_F	CCTGAAGAAGAAGAGCGTTTAAGAA	25	NA	25	100	NA	NA
99		?	29720527	PCR primer specific for CC8fc assay (includes USA300-NAE)	CC8f_R	RCATCCTACGATGGCCGAATC	21	NA	21	100	NA	NA
100	1	CC8fc+	29720527	PCR primer specific for CC8fc (includes USA300-NAE)	CC8f-T_FB+	TAAACGTCGTAAAGTAGAACAA	22	NA	22	100	NA	NA