Human pathways with at least 1 mitochondrial protein

neXtProt

Available at https://snorql.nextprot.org/?query=PREFIX%20wp:%20%3Chttp:%2F%2Fvocabularies.wikipathways.org%2Fwp%23%3E%0APREFIX%20rdfs:%20%3Chttp:%2F%2Fwww.w3.org%2F2000%2F01%2Frdf-schema%23%3E%0APREFIX%20dcterms:%20%3Chttp:%2F%2Fpurl.org%2Fdc%2Fterms%2F%3E%0A%0Aselect%20distinct%20%3Fpathwayname%20%20where%20%7B%0Aservice%20%3Chttp:%2F%2Fsparql.wikipathways.org%2Fsparql%3E%20%7B%0ASELECT%20DISTINCT%20%3Fpathwayname%20%3Fgen%20WHERE%0A%20%20%7B%20%0A%20%20%7B%3FgeneProduct%20a%20wp:Protein%7D%0A%20%20%20%20union%0A%20%20%7B%3FgeneProduct%20a%20wp:GeneProduct%7D%0A%20%20%0A%20%20%3FgeneProduct%20rdfs:label%20%3Fgen%20.%20%0A%20%20filter(!regex(%3Fgen,%22%5B%20a-z-%5D%22)).%20%23%20ensures%20official%20gene%20names%20for%20subsequent%20neXtprot%20matching%0A%20%20%3FgeneProduct%20dcterms:isPartOf%20%3Fpathway%20.%20%0A%20%20%3Fpathway%20a%20wp:Pathway%20.%20%0A%20%20%3Fpathway%20wp:organism%20%3Forganism%20.%20%0A%20%20FILTER(contains(str(%3Forganism),%229606%22))%20%23%20Human%20proteins%0A%20%20%3Fpathway%20dc:title%20%3Fpathwayname%20.%20%0A%20%20%23FILTER(regex(%3Fpathwayname,%22cancer%22,%22i%22)).%20%23%20Can%20be%20used%20to%20restrict%20pathways,%20sometimes%20cancer%20keyword%20is%20missing%20(e.g.%20lymphome)%0A%20%20%20%7D%0A%7D%0A%3Fentry%20a%20:Entry%20.%0A%3Fentry%20:gene%20%2F%20:name%20%3Fgen%20.%0A%7D%0Aorder%20by%20%3Fpathwayname&output=html

PREFIX wp: <http://vocabularies.wikipathways.org/wp#>PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>PREFIX dcterms: <http://purl.org/dc/terms/>select distinct ?pathwayname group_concat(distinct ?gen , ',') as ?genes where {service <http://sparql.wikipathways.org/sparql> {SELECT DISTINCT ?pathwayname ?gen WHERE{   { ?geneProduct a wp:GeneProduct .  }  union  { ?geneProduct a wp:Protein .  }  ?geneProduct rdfs:label ?gen .   filter(!regex(?gen,"[ a-z-]")). # ensures official gene names for subsequent neXtprot matching  ?geneProduct rdfs:label ?gen .   ?geneProduct dcterms:isPartOf ?pathway .   ?pathway a wp:Pathway .   ?pathway wp:organism ?organism .   FILTER(contains(str(?organism),"9606"))  ?pathway dc:title ?pathwayname . } }?entry a :Entry .?entry :gene / :name ?gen .?entry :isoform / :cellularComponent ?loc . values ?mitoloc {cv:SL-0173 cv:GO_0005739 } # SL and GO values for mitochondrion?loc :term / :childOf ?mitoloc.  # mitochondrion?loc :evidence / :quality :GOLD .filter not exists {?loc :negativeEvidence ?negev} # No negative localization evidence}order by ?pathwaynameSPARQL query

neXtProt team