A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | |
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1 | No. of presenters (<3) | Date | Presenter | IsBlank (name) | IsBlank (date) | Technique | Reference | Link | Status (0: to do, 1:done) | ||||||||||||||||
2 | 1 | 6-Sep-2013 | Himanshu Rajmane | FALSE | FALSE | Magnetic tweezers to study molecular motors | Kim & Saleh (2009) A high-resolution magnetic tweezer for single-molecule measurements Saleh1,2,Nucleic Acids Res. 37(20): e136. | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2777445/ | 1 | ||||||||||||||||
3 | 2 | 6-Sep-2013 | Viraj Doddihal | FALSE | FALSE | Optical tweezers | Moffit et al. (2008) Recent advances in optical tweezers. Ann. Rev. Biochem. 77: 205-228. | 1 | |||||||||||||||||
4 | 3 | 11-Oct-2013 | Neeladri Sen | FALSE | FALSE | Nanomechanical measurement by cantilevers- DNA hybridization and ligand-receptor binding | Fritz et al.(2000) Translating Biomolecular Recognition into Nanomechanics. Science Vol. 288(5464): 316-318 | http://www.sciencemag.org/content/288/5464/316.abstract | 1 | ||||||||||||||||
5 | 4 | 11-Oct-2013 | Swati Sharma | FALSE | FALSE | Scanning electron microscopy (SEM) | Stump RF, Pfeiffer JR, Seagrave J, Oliver JM. (1988) Mapping gold-labeled IgE receptors on mast cells by scanning electron microscopy: receptor distributions revealed by silver enhancement, backscattered electron imaging, and digital image analysis.J Histochem Cytochem. 36(5):493-502 | http://www.ncbi.nlm.nih.gov/pubmed/2965720 | 1 | ||||||||||||||||
6 | 5 | 11-Oct-2013 | Akhila G | FALSE | FALSE | Second harmonic generation (SHG) imaging | Gusachenko I, Tran V, Houssen YG, Allain JM, Schanne-Klein MC. (2012) Polarization-Resolved Second-Harmonic Generation in Tendon upon Mechanical Stretching. Biophys J. 102(9):2220-9. | http://www.ncbi.nlm.nih.gov/pubmed/22824287 | 1 | ||||||||||||||||
7 | 6 | 18-Oct-2013 | Yovhan Landge | FALSE | FALSE | Microfluidics for bacterial chemotaxis | Mao et al. (2003) A sensitive, versatile microfluidic assay for bacterial chemotaxis. PNAS USA 100: 5449-5454. | 1 | |||||||||||||||||
8 | 7 | 18-Oct-2013 | Niharika Sane | FALSE | FALSE | Patch clamp | B Sakmann, and E Neher (1984) Patch Clamp Techniques for Studying Ionic Channels in Excitable Membranes. Annual Review of Physiology. Vol.46: 455-472 | 1 | |||||||||||||||||
9 | 8 | 18-Oct-2013 | Harpreet Singh Kalsi | FALSE | FALSE | DNA nanopore sequencing | (a) Cherf et al. (2012) Automated forward and reverse ratcheting of DNA in a nanopore at 5-Angstrom precision. Nat. Biotech. 30, p344-348. | 1 | |||||||||||||||||
10 | 9 | 21-Oct-2013 | Vishnu M S | FALSE | FALSE | Fluorecence recovery after photobleaching (FRAP) to estimate diffusion coefficients of molecules | Mika JT et al. (2011) Evaluation of pulsed-FRAP and conventional-FRAP for determination of protein mobility in prokaryotic cells.PLoS One. 6(9):e25664. | http://www.ncbi.nlm.nih.gov/pubmed/21980523 | 1 | ||||||||||||||||
11 | 10 | 21-Oct-2013 | Neeraja Revi | FALSE | FALSE | Surface plasmon resonance in biology | Kim D. et al. (2012) Heptameric Targeting Ligands against EGFR and HER2 with High Stability and Avidity.PLoS One. 7(8):e43077. | http://www.ncbi.nlm.nih.gov/pubmed/22912791 | 1 | ||||||||||||||||
12 | 11 | 16 Sept-2013 | Shrikant Harne | FALSE | FALSE | DNA sequencinging by Sanger dye termination and denaturation. | Chen et al. (2010) DNA sequencing by denaturation: experimental proof of concept with an integrated fluidic device. Lab on a Chip. 10:p1153. | 1 | |||||||||||||||||
13 | 12 | 10/29/2013 (0800h) | Abhishek Mishra | FALSE | FALSE | 4pi Microscopy | Hüve et al. (2008) 4Pi Microscopy of the Nuclear Pore Complex. Biophys J. 95(2): 877–885. | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2440461/ | 1 | ||||||||||||||||
14 | 13 | 10/29/2013 (1845h) | Surabhi Jirapure | FALSE | FALSE | DNA origami and motors | Wickham et al. (2012) A DNA-based molecular motor that can navigate a network of tracks. 7: 169. | 1 | |||||||||||||||||
15 | 14 | 29-Oct-2013 (1845h) | Divya Rao | FALSE | FALSE | Electro impedence spectroscopy | Chang et al. (2010) Electrochemical Impedance Spectroscopy. Annual Review of Analytical Chemistry 3: 207-229 | 1 | |||||||||||||||||
16 | 15 | 10/29/2013 (1845h) | NIKHIL Y L K | FALSE | FALSE | Atomic force microscopy for imaging | Kuznetsova (2007) Atomic force microsopy probing of cell elasticity. Micron. 38: 824 | 1 | |||||||||||||||||
17 | 16 | 10/29/2013 (1845h) | Neha M | FALSE | FALSE | Patch clamp for measuring single ion-channel potentials | 1) W Almers, P R Stanfield and W Stühmer(1983) Lateral distribution of sodium and potassium channels in frog skeletal muscle: measurements with a patch-clamp technique. 2) Auerbach & Sachs (1984) Patch clamp studies of single ionic channels. Ann. Rev. Biophysics and Bioengg. 13:269. 3) Nelson DJ, Sachs F. (1979) Single ionic channels observed in tissue-cultured muscle. Nature 282(5741):861-3. | http://jp.physoc.org/content/336/1/261.short | 1 | ||||||||||||||||
18 | 17 | 10/30/2013 (0930h) | Prasenjeet Kawale | FALSE | FALSE | Scanning tunneling microscope (STM) | (1) J. T. Woodward IV* and J. A. Zasadzinski (1997) High-Resolution Scanning Tunneling Microscopy of Fully Hydrated Ripple-Phase Bilayers . Biophys J. 72(2 Pt 1): 964–976. (2) Veazey JP, Reguera G, Tessmer SH. (2011) Electronic properties of conductive pili of the metal-reducing bacterium Geobacter sulfurreducens probed by scanning tunneling microscopy. Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Dec;84(6 Pt 1):060901. Epub 2011 Dec 6 (3) IBM atom movie | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1185620/ | 1 | http://www.research.ibm.com/articles/madewithatoms.shtml#fbid=gHprEJHNu0P | |||||||||||||||
19 | 18 | 10/30/2013 (0930h) | Dhriti Nagar | FALSE | FALSE | Femtosecond resolved absorption spectroscopy | Rudi Berera et al.(2009) Ultrafast transient absorption spectroscopy: principles and application to photosynthetic systems Photosynth Res 101(2-3): 105–118. | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2744833/ | 1 | ||||||||||||||||
20 | 19 | 10/30/2013 (0930h) | Kavya Leo | FALSE | FALSE | Isothermal calorimetry (ITC) | Kozlov AG, Lohman TM. (2012) SSB Binding to ssDNA Using Isothermal Titration Calorimetry. Methods Mol Biol. 922:37-54. | http://www.ncbi.nlm.nih.gov/pubmed/22976176 | 1 | ||||||||||||||||
21 | 20 | 10/30/2013, (0930h) | Dincy Mariyam | FALSE | FALSE | Atomic force microscopy for DNA flexibility measurement | Wiggins et al. (2006) High flexibility of DNA on short length scales probed by atomic force microscopy. Nat. Nanotech. 1: 137 - 141 | 1 | |||||||||||||||||
22 | 21 | 10/30/2013, 1845h | Dipeshwari Shewale | FALSE | FALSE | Fluorescence activated cell sorting (FACS) | Freed NE et al. (2008) A simple screen to identify promoters conferring high levels of phenotypic noise. PLoS Genet. 4(12):e1000307. | http://www.ncbi.nlm.nih.gov/pubmed/19096504 | 1 | ||||||||||||||||
23 | 22 | 10/30/2013, 1900h | Amarendranath Soory | FALSE | FALSE | STORM nanoscopy | Huang B, Wang W, Bates M, Zhuang X (2008) 3.Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy. Science. 319(5864):810-3 | http://www.ncbi.nlm.nih.gov/pubmed/18174397 | 1 | ||||||||||||||||
24 | 23 | 11/1/2013, 0800h | Tanushree Kundu | FALSE | FALSE | Cell traction force microscopy | Kraning-Rush CM, Carey SP, Califano JP, Reinhart-King CA. (2012) Quantifying traction stresses in adherent cells. Methods Cell Biol. 110:139-78. | http://www.ncbi.nlm.nih.gov/pubmed/22482948 | 0 | ||||||||||||||||
25 | 24 | 11/1/2013, 0815h | Kunalika Jain | FALSE | FALSE | Single plane illumination microscopy (SPIM) | 1) Jan Huisken*, Jim Swoger, Filippo Del Bene, Joachim Wittbrodt and Ernst H. K. Stelzer Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy, Science, Vol. 305 (5686), p1007-1009; 2) Jörg G. Ritter, Roman Veith, Jan-Peter Siebrasse, and Ulrich Kubitscheck (2008) High-contrast single-particle tracking by selective focal plane illumination microscopy. Optics Express, Vol. 16, Issue 10, pp. 7142-7152 (2008) | http://www.sciencemag.org/content/305/5686/1007.short | 0 | ||||||||||||||||
26 | 25 | 11/1/2013, 1330h | Sukrut Kamerkar | FALSE | FALSE | Dynamic light scattering | Y. Georgalisa et al. (2012) Light scattering studies on Ficoll PM70 solutions reveal two distinct diffusive modes. J. Colloid & Interface Science. Volume 386, Issue 1, Pages 141–147 | http://www.sciencedirect.com/science/article/pii/S0021979712008399# | 0 | ||||||||||||||||
27 | 26 | 11/1/2013, 1330h | Anurag Mishra | FALSE | FALSE | Coherent Anti-Stokes Raman Spectroscopy (CARS) | Zhang, Xu; Roeffaers, Maarten B. J.; Basu, Srinjan; Daniele, Joseph R.; Fu, Dan; Freudiger, Christian; Holtom, Gary; Xie, X. Sunney. (2012) Label-Free Live-Cell Imaging of Nucleic Acids Using Stimulated Raman Scattering Microscopy," ChemPhysChem 13, 1054-1059 | 0 | |||||||||||||||||
28 | 27 | 4-Nov-2013, 1430h | Shailendra Kushwaha | FALSE | FALSE | Confocal laser scanning microscopy | Cheng et al. (1999) Amplitude distribution of calcium sparks in confocal images: theory and studies with an automatic detection method. Biophys J. 76(2): 606–617. | 0 | |||||||||||||||||
29 | 28 | 4-Nov-2013, 1430h | Marina Victor | FALSE | FALSE | 2D gel electrophoresis for quantification of protein abundance | Fey & Larsen (2001) 2D or not 2D. Curr. Op. Chem. Biol. 5:p26 | 0 | |||||||||||||||||
30 | 29 | 4-Nov-2013, 1430h | Afsah Hasan | FALSE | FALSE | Laser nanosurgery | (1) Sacconi L, Tolić-Nørrelykke IM, Antolini R, Pavone FS. (2005) Combined intracellular three-dimensional imaging and selective nanosurgery by a nonlinear microscope. J Biomed Opt. 10(1):14002. (2) Zeigler MB, Chiu DT. (2013) Single-cell nanosurgery. Methods Mol Biol. 991:139-48. | 0 | |||||||||||||||||
31 | 30 | 4-Nov-2013, 1430h | Saurabh | FALSE | FALSE | Cell stretcher- measuring single cell mechanics | Guck J, Ananthakrishnan R, Mahmood H, Moon TJ, Cunningham CC, Käs J. (2001) The optical stretcher: a novel laser tool to micromanipulate cells. Biophys J. 81(2):767-84. | http://www.ncbi.nlm.nih.gov/pubmed/11463624 | 0 | ||||||||||||||||
32 | 31 | 11/11/2013 (1430h) | AJAY KUMAR | FALSE | FALSE | Determining binding affinities using column chromatography | Ken-ichi KASAI and Shin-ichi ISHII (1975) Quantitative Analysis of Affinity Chromatography of Trypsin- A New Technique for Investigation of Protein-ligand Interaction. J Biochem 77 (1):261-264 | http://jb.oxfordjournals.org/content/77/1/261.abstract | 0 | ||||||||||||||||
33 | 32 | 11/11/2013 (1430h) | Sameer Thukral | FALSE | FALSE | Photoactivation in diffusion measurements | Bakshi S et al. (2011) Subdiffraction-limit study of Kaede diffusion and spatial distribution in live Escherichia coli.Biophys J.101(10):2535-44. | 0 | |||||||||||||||||
34 | 33 | 11/11/2013 (1430h) | Bipasha Dey | FALSE | FALSE | STED nanoscopy | Willig KI, Harke B, Medda R, Hell SW. (2007) STED microscopy with continuous wave beams. Nat Methods. 4(11):915-8. | 0 | |||||||||||||||||
35 | 34 | 11/11/2013 (1430h) | Supreeth K S | FALSE | FALSE | ITC to measure enzyme kinetics | Burnouf et al. (2012) kinITC: a new method for obtaining joint thermodynamic and kinetic data by isothermal titration calorimetry. J Am Chem Soc. 134(1):559-65. Epub 2011 Dec 16. | http://www.ncbi.nlm.nih.gov/pubmed/22126339 | 0 | ||||||||||||||||
36 | 35 | 13/11/2013 (0930h) | Nitheesh K. | FALSE | FALSE | DNA nanopore sequencing | (b) Manrao et al. (2012) Reading DNA at single-nucleotide resolution with a mutant MspA nanopore and phi29 DNA polymerase. Nat. Biotech.30, 349–353 | 0 | |||||||||||||||||
37 | 36 | 13/11/2013 (0930h) | Sadhana Panzade | FALSE | FALSE | Optical tweezers to study forces in constant force mode | Chen et al. (2009) Stretching Submicron Biomolecules with Constant-Force Axial Optical Tweezers. Biophys J. 96: 4710-4708 | 0 | |||||||||||||||||
38 | 37 | 13/11/2013 (0930h) | Bodakuntla Satish | FALSE | FALSE | Fluorescence resonance energy transfer (FRET) | Violin et al. (2003) A genetically encoded fluorescent reporter reveals oscillatory phosphorylation by protein kinase C. J Cell Biol. 161(5):899-909. | http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&doptcmdl=Citation&defaultField=Title%20Word&term=Violin[author]%20AND%20A%20genetically%20encoded%20fluorescent%20reporter%20reveals%20oscillatory%20phosphorylation%20by%20protein%20kinase%20C. | 0 | ||||||||||||||||
39 | 38 | 13/11/2013 (0930h) | Naveen Kumar, | FALSE | FALSE | ITC to measure enzyme kinetics | Burnouf et al. (2012) kinITC: a new method for obtaining joint thermodynamic and kinetic data by isothermal titration calorimetry. J Am Chem Soc. 134(1):559-65. Epub 2011 Dec 16. | http://www.ncbi.nlm.nih.gov/pubmed/22126339 | 0 | ||||||||||||||||
40 | 39 | 13/11/2013 (1845h) | Lokesh Pimpale | FALSE | FALSE | DNA devices | Modi et al. (2009) A DNA nanomachine that maps spatial and temporal pH changes inside living cells. Nature Nanotech. 4: 325 | 0 | |||||||||||||||||
41 | 40 | 13/11/2013 (1900h) | Poortata Lalwani | FALSE | FALSE | Electromyography | 1)Sensors 2012, 12 A Wireless sEMG Recording System and Its Application to Muscle Fatigue Detection Kang-Ming Chang 1,2, Shin-Hong Liu 3,* and Xuan-Han Wu 3 2) G M Pool Electro-myographic study of the flexion reflex of the lower limb Paraplegia (1965) 3, 188–193; doi:10.1038/sc.1965.25 | 0 | |||||||||||||||||
42 | 41 | 13/1/2013, 1915h | Vishnu K N | FALSE | FALSE | Two-photon microscopy for tissue imaging | 1) So et al., "Two-photon excitation fluorescence microscopy," Annu. Rev. Biomed. Eng., 2.,Johannssen HC, Helmchen F. (2012) Two-photon imaging of spinal cord cellular networks. Exp Neurol. 2) W Denk, JH Strickler, WW Webb (1990) Two-photon laser scanning fluorescence microscopy - Science, 1990 | http://www.ncbi.nlm.nih.gov/pubmed/22849822 | 0 | ||||||||||||||||
43 | Absorption spectrophotometry | 0 | |||||||||||||||||||||||
44 | Dielectric spectroscopy for cell characterization | Heileman & Tabrizian (2013) Dielectric spectroscopy as a viable biosensing tool for cell and tissue characterization and analysis.Biosens Bioelectron. 2013 Nov 15;49:348-59. | http://www.ncbi.nlm.nih.gov/pubmed/23796534 | 0 | |||||||||||||||||||||
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