croc-chicken

	A	B	C	D	E	F	G	H	I	J	K	L	M	N	O	P	Q	R	S	T	U	V	W	X	Y	Z	AA	AB	AC	AD	AE	AF	AG	AH	AI	AJ	AK	AL	AM	AN	AO	AP	AQ	AR	AS	AT	AU	AV	AW	AX	AY	AZ	BA	BB	BC	BD	BE	BF	BG	BH	BI	BJ	BK	BL	BM	BN
1					1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60
2			Chicken	http://www.ncbi.nlm.nih.gov/protein/ADB07161.1	m	a	h	q	a	h	s	y	h	m	v	d	p	s	p	w	p	i	f	g	a	a	a	a	l	l	t	t	s	g	l	i	m	w	f	h	y	s	s	t	t	l	l	t	m	g	l	l	s	m	l	l	v	m	l	q	w	w	r	d
3			COX3	http://www.ncbi.nlm.nih.gov/nuccore/283049385	atg	gca	cac	caa	gca	cac	tcc	tac	cac	ata	gtt	gac	cca	agc	cca	tga	cca	atc	ttc	ggc	gca	gcc	gca	gca	cta	cta	acc	acc	tct	ggc	cta	atc	ata	tgg	ttc	cac	tac	agc	tcg	acc	acc	cta	ctg	aca	ata	ggc	ctc	ctc	tct	atg	ctt	cta	gtc	atg	ctg	caa	tga	tga	cga	gac
4
5					ATG	ACA	CAC	CAA	ACA	CAC	TT-/CTC	TTC	CAC	ATA	GTT	AAC	CCA	AGC	CCA	TGA	CCA	ATC	ACC	GGC	GCA	ATA	GCA	GCA	ATA	ATA	CTC	ACC	ACT	GGC	CTA	ATC	C/TTA	TGG	TTC	CAC	TAC	AAC	TCG	TCC/AGC	CTC	AT-	CTG	AT-	T/CTA	GGC	CTC	ATC	TCT	ACG	CTT	CTA	ACC	ATA	TT-	CAA	TGA	TGA	CGA	GAC
6						*					?	*			*					*		*	*	*	*		*	*			1*	*		*	1		#	*			*	*	*			?	*			*	*		*	*	2	*	*
7						AC	CA	CA	AC	CA	-T-	TT	CA	ATA	GT	AA	CC		CC	TG	CC	AT	AC	GG	GC	ATA	GC	GC	ATA	ATA	-T-	AC	AC	GG		AT		TG	TT	CA	TA	AA				AT		AT	-T-	GG		AT		AC	-T-		AC	ATA	TT-	CA	TG	TG	CG	GA
8			Croc	http://www.ncbi.nlm.nih.gov/protein/YP_004300400.1	m	t	h	q	t	h	l	f	h	m	v	n	p	s	p	w	p	i	t	g	a	m	a	a	m	m	l	t	t	g	l	i	l	w	f	h	y	n	s	s	l	i	l	i	l	g	l	i	s	t	l	l	t	m	f	q	w	w	r	d
9			COX3	http://www.ncbi.nlm.nih.gov/nuccore/NC_015238.2?report=fasta&from=8639&to=9422	atg	acc	cac	caa	aca	cac	ctg	ttt	cac	ata	gtc	aac	cca	agc	cca	tgg	cca	att	aca	gga	gcc	ata	gcc	gcc	ata	ata	tta	aca	act	gga	tta	atc	cta	tga	ttc	cac	tat	aat	tca	agc	cta	att	cta	att	cta	gga	cta	atc	tcc	acc	tta	ctg	act	ata	ttt	caa	tga	tga	cga	gac
10					atg	act	cat	caa	act	cat	tta	ttt	cat	ata	gtt	aat	cct	tct	cct	tgg	cct	att	act	ggt	gct	ata	gct	gct	ata	ata	tta	act	act	ggt	tta	att	tta	tgg	ttt	cat	tat	aat	tct	tct	tta	att	tta	att	tta	ggt	tta	att	tct	act	tta	tta	act	ata	ttt	caa	tgg	tgg	cgt	gat
11		code 2	standard		gtg	acc	cac	cag	acc	cac	ttg	ttc	cac		gtc	aac	ccc	tcc	ccc	tga	ccc	atc	acc	ggc	gcc		gcc	gcc			ttg	acc	acc	ggc	ttg	atc	ttg	tga	ttc	cac	tac	aac	tcc	tcc	ttg	atc	ttg	atc	ttg	ggc	ttg	atc	tcc	acc	ttg	ttg	acc		ttc	cag	tga	tga	cgc	gac
12	AGA	ter	arg R			aca			aca		ctt				gta		cca	tca	cca		cca		aca	gga	gca		gca	gca			ctt	aca	aca	gga	ctt		ctt						tca	tca	ctt		ctt		ctt	gga	ctt		tca	aca	ctt	ctt	aca						cga
13	AGG	ter	arg R			acg			acg		ctc				gtg		ccg	tcg	ccg		ccg		acg	ggg	gcg		gcg	gcg			ctc	acg	acg	ggg	ctc		ctc						tcg	tcg	ctc		ctc		ctc	ggg	ctc		tcg	acg	ctc	ctc	acg						cgg
14	ATA	met M	ile I								cta							agt													cta				cta		cta						agt	agt	cta		cta		cta		cta		agt		cta	cta
15	TGA	trp W	ter								ctg							agc													ctg				ctg		ctg						agc	agc	ctg		ctg		ctg		ctg		agc		ctg	ctg
16		gallus
17	GTG	ini			rg	wr	rg	rg	rg	rg	nh	wr	rg	nh	wr	rg	rg	rg	rg	rg	rg	wr	wr	wr	wr	nh	wr	wr	nh	nh	wr	wr	rg	wr	wr	rg	sh	wr	rg	rg	wr	wr	sh	sh	nh	nh	sh	nh	nh	wr	sh	rg	sh	wr	wr	sh	wr	nh	nh	rg	rg	rg	rg	rg
18					inic	thcd	thcd	thcd	thcd	thcd	ftcd	thcd	thcd	exct	thcd	thcd	thcd	allcd	thcd	thcd	thcd	thcd	thcd	thcd	thcd	exct	thcd	thcd	exct	exct	ftcd	thcd	thcd	thcd	ftcd	thcd	ftcd	thcd	thcd	thcd	thcd	thcd	allcd	allcd	ftcd	thcd	ftcd	thcd	ftcd	thcd	ftcd	thcd	allcd	thcd	ftcd	ftcd	thcd	exct	thcd	thcd	thcd	thcd	thcd	thcd
19					2	4	2	2	4	2	6	2	2	1	4	2	4	6	4	2	4	2	4	4	4	1	4	4	1	1	6	4	4	4	6	2	6	2	2	2	2	2	6	6	6	2	6	2	6	4	6	2	6	4	6	6	4	1	2	2	2	2	2	2	205	3.416666667
20						4					6	2		-	4							2	4	4	4	-	4	4	-	-	6	4		4	6			2			2	2			-	-		-	-	4				4	6		4	-	-						82
21					2		2	2	4	2			2			2	4	6	4	2	4												4			2	-		2	2			-	-			-				-	2	-			-				2	2	2	2	2	58	3.534482759
22
23																																																							wr	3
24					26	60																																																	sh	8
25					2		32																																																nh	3
26																																																								14
27
28
29						x			x		x	x			x	x				x		x	x	x	x	x	x	x	x	x	x	x	x	x	x		x	x			x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x						18
30
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33
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37
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39
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42
43
44
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46