Epidemiologic measures: Incidence & prevalence
Victor J. Schoenbach, PhD home page
Department of Epidemiology�Gillings School of Global Public Health�University of North Carolina at Chapel Hill
www.unc.edu/epid600/
1/25/2011
Incidence and prevalence
1
Principles of Epidemiology for Public Health (EPID600)�
Famous last words
5/20/2002
Incidence and prevalence
2
Quotations that demonstrate the value of humility about predicting the future�(authenticity not established)
Courtesy of Suzanne Cloutier, 11/17/1998
“Louis Pasteur's theory of germs is ridiculous fiction.”
- Pierre Pachet, Professor of Physiology at Toulouse, 1872
5/20/2002
Incidence and prevalence
3
FAMOUS LAST WORDS: quotations that demonstrate the value of humility in predicting the future
“This `telephone´ has too many shortcomings to be seriously considered as a means of communication. The device is inherently of no value to us.”
- Western Union internal memo, 1876
(Source: 2000 National Ernst & Young Entrepreneur of the Year Awards special insert in USA Today, 2/11/2000, p9B)
5/20/2002
Incidence and prevalence
4
FAMOUS LAST WORDS: quotations that demonstrate the value of humility in predicting the future
“Everything that can be invented has been invented.”
- Charles H. Duell, Commissioner, US Patent Office,1899
5/20/2002
Incidence and prevalence
5
FAMOUS LAST WORDS: quotations that demonstrate the value of humility in predicting the future
“The wireless music box has no imaginable commercial value. Who would pay for a message sent to nobody in particular?”
- David Sarnoff's associates in response to his urgings for investment in radio in the 1920s.
9/11/2005
Incidence and prevalence
6
FAMOUS LAST WORDS: quotations that demonstrate the value of humility in predicting the future
“My thesis in this lecture is that macroeconomics . . . has succeeded: Its central problem of depression-prevention has been solved, for all practical purposes, and has in fact been solved for many decades.”
- Robert E. Lucas, Jr., American Economics Association Presidential Address, January 10, 2003�http://home.uchicago.edu/~sogrodow/homepage/paddress03.pdf
1/25/2011
Incidence and prevalence
7
FAMOUS LAST WORDS: quotations that demonstrate the value of humility in predicting the future
1/25/2011
Incidence and prevalence
8
The population perspective requires measuring disease in populations
1/25/2011
Incidence and prevalence
9
Deriving meaning from stimuli
Vase or faces?
Which line is longer?
1/25/2011
Incidence and prevalence
10
Measurement “captures” the phenomenon
Classification and measurement are based on:
5/20/2002
Incidence and prevalence
11
O
O
O
O
O
O
O
An example population (N=200)
1/25/2011
Incidence and prevalence
12
O
How can we quantify disease in populations?
1/25/2011
Incidence and prevalence
13
O
O
How can we quantify disease in populations?
5/20/2002
Incidence and prevalence
14
O
O
O
How can we quantify disease in populations?
5/20/2002
Incidence and prevalence
15
O
O
O
O
O
How can we quantify disease in populations?
5/20/2002
Incidence and prevalence
16
O
O
O
O
O
O
How can we quantify disease in populations?
1/25/2011
Incidence and prevalence
17
O
O
O
O
O
O
How can we quantify the frequency?
1/25/2011
Incidence and prevalence
18
O
O
O
O
O
O
Rate of occurrence of new cases�per unit time (e.g., 1 per month)
5/20/2002
Incidence and prevalence
19
O
1 new case in month 1
5/20/2002
Incidence and prevalence
20
O
O
1 new case in month 2
5/20/2002
Incidence and prevalence
21
O
O
O
1 new case in month 3, for a total of 3 cases
5/20/2002
Incidence and prevalence
22
O
O
O
O
O
2 new cases in month 4
5/20/2002
Incidence and prevalence
23
O
O
O
O
O
O
1 new case in month 5 (total=6)
5/25/2011
Incidence and prevalence
24
O
O
O
O
O
O
O
1 case in month 6
5/20/2002
Incidence and prevalence
25
O
O
O
O
O
O
O
O
1 new case in month 7
5/20/2002
Incidence and prevalence
26
O
O
O
O
O
O
O
O
O
O
2 new cases in month 8
5/20/2002
Incidence and prevalence
27
O
O
O
O
O
O
O
O
O
O
O
O
2 cases in month 9
1/9/2007
Incidence and prevalence
28
O
O
O
O
O
O
O
O
O
O
O
O
Rate of occurrence of new cases during 9 months: 1 case/month to 2 cases/month
1/9/2007
Incidence and prevalence
29
Number of cases depends on length of interval
Divide by length of time interval, so can compare across intervals
Number of new cases�Rate of new cases = –––––––––––––––––� Time interval
= 12 cases / 9 months = 1.33 cases / month �
1/25/2011
Incidence and prevalence
30
Number of cases depends on population size
So, divide by population and time:
Number of new cases�Incidence rate = ––––––––––––––––––
Population-time
1/25/2011
Incidence and prevalence
31
How to estimate population-time?
Population at risk: the people eligible to become a case and to be counted as one.
In this example that population declines as each case occurs.
So estimate population-time as . . .
1/25/2011
Incidence and prevalence
32
Population-time =
Method 1: Add up the time that each person is at risk
Method 2: Add up the population at risk during each time segment
Method 3: Multiply the average size of the population at risk by the length of the time interval
1/9/2007
Incidence and prevalence
33
Estimating population-time - method 2
Total population-time over 9 months =
200 + 199 + 198 + 197 + 195 + 194 + 193 + 192 + 190
= 1,758 person-months
= 146.5 person-years
However, cases are not at risk for a full month.
1/9/2007
Incidence and prevalence
34
Estimating population-time - method 2 - better
Total population-time over 9 months =
199.5 + 198.5 + 197.5 + 196 + 194.5 + 193.5 + 192.5 + 191 + 189
= 1,752 person-months
= 146 person-years
assuming that cases develop, on average, in the middle of the month
1/9/2007
Incidence and prevalence
35
Estimating population-time - method 3
Average size of the population at risk during the 9 months = 195.3 (1,758 / 9) or approximately: (200 + 188) /2 = 194
Population-time = 195.3 x 9 months or (approximately) 194 x 9 months
= 1,746 person-months
= 145.5 person-years
1/9/2007
Incidence and prevalence
36
Equivalent to - method 3
Take initial size of population at risk and reduce it for time the people were not at risk due to acquiring the disease:
200 - 12/2 = 194 (approximately)
Population-time = 194 x 9 months
= 1,746 person-months
= 145.5 person-years
1/25/2011
Incidence and prevalence
37
Incidence rate (“incidence density”)
Number of new cases� –––––––––––––––––––––––––––––––�Avg population at risk × Time interval
Number of new cases� = –––––––––––––––––––– � Population-time
1/25/2011
Incidence and prevalence
38
O
O
O
O
O
O
O
What proportion of the population at risk are affected after 5 months?
1/30/2004
Incidence and prevalence
39
O
What proportion of the population is affected after 1 month? (1/200)
5/20/2002
Incidence and prevalence
40
O
O
What proportion of the population is affected after 2 months? (2/200)
5/20/2002
Incidence and prevalence
41
O
O
O
What proportion of the population is affected after 3 months? (3/200)
5/20/2002
Incidence and prevalence
42
O
O
O
O
O
What proportion of the population is affected after 4 months? (5/200)
1/9/2007
Incidence and prevalence
43
O
O
O
O
O
O
6 / 200 = 0.03 = 3% = 30 / 1,000 in 5 months
1/25/2011
Incidence and prevalence
44
Incidence proportion (“cumulative incidence”)
Number of new cases�5-month CI = –––––––––––––––––––� Population at risk
Incidence proportion estimates risk.
1/25/2011
Incidence and prevalence
45
Incidence rate versus incidence proportion
1/25/2011
Incidence and prevalence
46
Incidence rate versus incidence proportion
Incidence rate versus incidence proportion�(rare disease, IR = 0.005 / month)
1/25/2011
Incidence and prevalence
47
(see spreadsheet at epidemiolog.net/studymat/)
Incidence rate versus incidence proportion� (common disease, IR = 0.1 / month)
2/7/2012
Incidence and prevalence
48
5/20/2002
Incidence and prevalence
49
Case fatality rate
“Case fatality rate” (but it’s really a proportion)
= proportion of cases who die� (in a specified time interval)
1/30/2007
Incidence and prevalence
50
Mortality rate
Number of deaths�Mortality rate = ––––––––––––––––––––––––––––� Population at risk × Time interval
Number of deaths�Annual mortality rate = ––––––––––––––––––––––� Mid-year population (x 1 yr)
6/6/2002
Incidence and prevalence
51
Mortality rate (more notes)
Number of deaths�Mortality rate = ––––––––––––––––––––––––––––� Population at risk × Time interval
Number of deaths�Annual mortality rate = ––––––––––––––––––� Mid-year population
5/20/2002
Incidence and prevalence
52
Mortality rates versus incidence rates
1/9/2007
Incidence and prevalence
53
Prevalence – another important proportion
Number of existing (and new) cases�Prevalence = –––––––––––––––––––––––––––––––� Population at risk
5/20/2002
Incidence and prevalence
54
O
O
O
O
O
O
O
1 new case, 1 death
5/20/2002
Incidence and prevalence
55
O
O
O
O
O
O
O
O
1 new case, 1 new death
5/20/2002
Incidence and prevalence
56
O
O
O
O
O
O
O
O
O
O
2 new cases, no deaths
5/20/2002
Incidence and prevalence
57
O
O
O
O
O
O
O
O
O
O
O
O
2 new cases, 1 new death
5/20/2002
Incidence and prevalence
58
O
O
O
O
O
O
O
O
O
O
O
O
What is the prevalence? (9 / 197)
5/20/2002
Incidence and prevalence
59
Fine points . . .
“Could” develop the condition + “would” be counted.
5/20/2002
Incidence and prevalence
60
More fine points
5/20/2002
Incidence and prevalence
61
More fine points . . .
9/22/2005, 9/8/2008
Incidence and prevalence
62
Fine points . . .
“You can never, never take anything for granted.”
Noel Hinners, vice president for flight systems at Lockheed Martin Astronautics in Denver, concerning the loss of the Martian Climate Orbiter due to the Lockheed Martin spacecraft team’s having reported measurements in English units whiles the orbiter’s navigation team at the Jet Propulsion Laboratory (JPL) in Pasadena, California assumed the measurements were in metric units.
1/30/2004
Incidence and prevalence
63
5/20/2002
Incidence and prevalence
64
Relation of incidence and prevalence
9/23/2002
Incidence and prevalence
65
5/20/2002
Incidence and prevalence
66
Population at risk
Existing cases
Deaths, cures, etc.
1/25/2011
Incidence and prevalence
67
Incidence, prevalence, duration of hospitalization
Remote community of 101,000 people
One hospital, patient census = 1,000
Steady state
500 admissions per week
Prevalence = 1,000/101,000 = 9.9/1,000
IR = 500/100,000 = 5/1,000/week
Duration Prevalence / IR = 2 weeks
1/25/2011
Incidence and prevalence
68
Relation of incidence and prevalence
Under somewhat special conditions,� Prevalence odds = incidence × duration� Prevalence incidence × duration
(see spreadsheet at www.epidemiolog.net/studymat/)
5/20/2002
Incidence and prevalence
69
Standardization
(See the Evolving Text on www.epidemiolog.net)
8/17/2009
Incidence and prevalence
70
Familiar example of weighted averages
8/17/2009
Incidence and prevalence
71
Comparing a Suburu and a Mazda
Juan drives a Suburu 800 km on Interstate highways and 200 km on other roads. His car uses 0.050 LpK on Interstates and 0.100 LpK on other roads, for a total of 60 liters of petrol, an average of 0.060 LpK (60 L / 1000 km). His overall LpK can be expressed as a weighted average:
(800/1000) x 0.050 LpK + (200/1000) x 0.100 LpK
= 0.80 x 0.050 LpK + 0.20 x 0.100 LpK = 0.060 LpK
8/17/2009
Incidence and prevalence
72
Comparing a Suburu and a Mazda
Shizu drives her Mazda on a different route, with only 200 km on Interstate and 800 km on other roads. She uses 0.045 lpk on Interstate highways and 0.080 LpK on non-Interstate. She uses a total of 73 liters, or 0.073 LpK. Her overall LpK can be expressed as a weighted average:
(200/1,000) x 0.045 LpK + (800/1,000) x 0.080 LpK
= 0.20 x 0.045 LpK + 0.80 x 0.080 LpK =0.073 LpK
8/17/2009
Incidence and prevalence
73
How can we compare their fuel efficiency?
8/17/2009
Incidence and prevalence
74
Total fuel efficiency is not comparable because weights are different
8/17/2009
Incidence and prevalence
75
By adopting a “standard” set of weights we can compare fairly
8/17/2009
Incidence and prevalence
76
Comparing a Suburu and a Mazda
= 0.60 x 0.050 LpK + 0.40 x 0.100 LpK =0.070 LpK
= 0.60 x 0.045 LpK + 0.40 x 0.080 LpK =0.059 LpK
The choice of weights may often affect the results of the comparison.
“I'm just glad it'll be Clark Gable who's falling on his face and not Gary Cooper.”
- Gary Cooper on his decision not to take the leading role in “Gone With The Wind”
5/20/2002
Incidence and prevalence
77
FAMOUS LAST WORDS: quotations that demonstrate the value of humility in predicting the future
“A cookie store is a bad idea. Besides, the market research reports say America likes crispy cookies, not soft and chewy cookies like you make.”
- Response to Debbi Fields' idea of starting Mrs. Fields' Cookies.
5/20/2002
Incidence and prevalence
78
FAMOUS LAST WORDS: quotations that demonstrate the value of humility in predicting the future
“Computers in the future may weigh no more than 1.5 tons.”
- Popular Mechanics, forecasting the relentless march of science, 1949
5/20/2002
Incidence and prevalence
79
FAMOUS LAST WORDS: quotations that demonstrate the value of humility in predicting the future
“I think there is a world market for maybe five computers.”
-Thomas Watson, chairman of IBM, 1943
5/20/2002
Incidence and prevalence
80
FAMOUS LAST WORDS: quotations that demonstrate the value of humility in predicting the future