Chapter 5
The Structure and Function of Large Biological Molecules
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PowerPoint® Lecture Presentations for Biology
Eighth Edition
Neil Campbell and Jane Reece
Lectures by Chris Romero, updated by Erin Barley with contributions from Joan Sharp
Overview: The Molecules of Life
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Fig. 5-1
Concept 5.1: Macromolecules are polymers, built from monomers
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The Synthesis and Breakdown of Polymers
Animation: Polymers
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Fig. 5-2
Short polymer
HO
1
2
3
H
HO
H
Unlinked monomer
Dehydration removes a water
molecule, forming a new bond
HO
H2O
H
1
2
3
4
Longer polymer
(a) Dehydration reaction in the synthesis of a polymer
HO
1
2
3
4
H
H2O
Hydrolysis adds a water
molecule, breaking a bond
HO
H
H
HO
1
2
3
(b) Hydrolysis of a polymer
Fig. 5-2a
Dehydration removes a water
molecule, forming a new bond
Short polymer
Unlinked monomer
Longer polymer
Dehydration reaction in the synthesis of a polymer
HO
HO
HO
H2O
H
H
H
4
3
2
1
1
2
3
(a)
Fig. 5-2b
Hydrolysis adds a water
molecule, breaking a bond
Hydrolysis of a polymer
HO
HO
HO
H2O
H
H
H
3
2
1
1
2
3
4
(b)
The Diversity of Polymers
2
3
HO
H
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Concept 5.2: Carbohydrates serve as fuel and building material
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Sugars
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Fig. 5-3
Dihydroxyacetone
Ribulose
Ketoses
Aldoses
Fructose
Glyceraldehyde
Ribose
Glucose
Galactose
Hexoses (C6H12O6)
Pentoses (C5H10O5)
Trioses (C3H6O3)
Fig. 5-3a
Aldoses
Glyceraldehyde
Ribose
Glucose
Galactose
Hexoses (C6H12O6)
Pentoses (C5H10O5)
Trioses (C3H6O3)
Fig. 5-3b
Ketoses
Dihydroxyacetone
Ribulose
Fructose
Hexoses (C6H12O6)
Pentoses (C5H10O5)
Trioses (C3H6O3)
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Fig. 5-4
(a) Linear and ring forms
(b) Abbreviated ring structure
Fig. 5-4a
(a) Linear and ring forms
Fig. 5-4b
(b) Abbreviated ring structure
Animation: Disaccharides
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Fig. 5-5
(b) Dehydration reaction in the synthesis of sucrose
Glucose
Fructose
Sucrose
Maltose
Glucose
Glucose
(a) Dehydration reaction in the synthesis of maltose
1–4
glycosidic
linkage
1–2
glycosidic
linkage
Polysaccharides
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Storage Polysaccharides
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Fig. 5-6
(b) Glycogen: an animal polysaccharide
Starch
Glycogen
Amylose
Chloroplast
(a) Starch: a plant polysaccharide
Amylopectin
Mitochondria
Glycogen granules
0.5 µm
1 µm
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Structural Polysaccharides
Animation: Polysaccharides
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Fig. 5-7
(a) and glucose
ring structures
Glucose
Glucose
(b) Starch: 1–4 linkage of glucose monomers
(b) Cellulose: 1–4 linkage of glucose monomers
Fig. 5-7a
(a) and glucose ring structures
Glucose
Glucose
Fig. 5-7bc
(b) Starch: 1–4 linkage of glucose monomers
(c) Cellulose: 1–4 linkage of glucose monomers
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Fig. 5-8
monomer
Cellulose
molecules
Microfibril
Cellulose
microfibrils
in a plant
cell wall
0.5 µm
10 µm
Cell walls
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Fig. 5-9
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Fig. 5-10
The structure
of the chitin
monomer.
(a)
(b)
(c)
Chitin forms the
exoskeleton of
arthropods.
Chitin is used to make
a strong and flexible
surgical thread.
Concept 5.3: Lipids are a diverse group of hydrophobic molecules
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Fats
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Fig. 5-11
Fatty acid
(palmitic acid)
Glycerol
(a) Dehydration reaction in the synthesis of a fat
Ester linkage
(b) Fat molecule (triacylglycerol)
Fig. 5-11a
Fatty acid
(palmitic acid)
(a)
Dehydration reaction in the synthesis of a fat
Glycerol
Fig. 5-11b
(b)
Fat molecule (triacylglycerol)
Ester linkage
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Animation: Fats
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Fig. 5-12
Structural
formula of a
saturated fat
molecule
Stearic acid, a
saturated fatty
acid
(a) Saturated fat
Structural formula
of an unsaturated
fat molecule
Oleic acid, an
unsaturated
fatty acid
(b) Unsaturated fat
cis double
bond causes
bending
Fig. 5-12a
(a)
Saturated fat
Structural
formula of a
saturated fat
molecule
Stearic acid, a
saturated fatty
acid
Fig. 5-12b
(b)
Unsaturated fat
Structural formula
of an unsaturated
fat molecule
Oleic acid, an
unsaturated
fatty acid
cis double
bond causes
bending
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Phospholipids
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Fig. 5-13
(b)
Space-filling model
(a)
(c)
Structural formula
Phospholipid symbol
Fatty acids
Hydrophilic
head
Hydrophobic
tails
Choline
Phosphate
Glycerol
Hydrophobic tails
Hydrophilic head
Fig. 5-13ab
(b)
Space-filling model
(a)
Structural formula
Fatty acids
Choline
Phosphate
Glycerol
Hydrophobic tails
Hydrophilic head
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Fig. 5-14
Hydrophilic
head
Hydrophobic
tail
WATER
WATER
Steroids
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Fig. 5-15
Concept 5.4: Proteins have many structures, resulting in a wide range of functions
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Table 5-1
Animation: Structural Proteins
Animation: Storage Proteins
Animation: Transport Proteins
Animation: Receptor Proteins
Animation: Contractile Proteins
Animation: Defensive Proteins
Animation: Hormonal Proteins
Animation: Sensory Proteins
Animation: Gene Regulatory Proteins
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Animation: Enzymes
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Fig. 5-16
Enzyme
(sucrase)
Substrate
(sucrose)
Fructose
Glucose
OH
H
O
H2O
Polypeptides
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Amino Acid Monomers
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Fig. 5-UN1
Amino
group
Carboxyl
group
carbon
Fig. 5-17
Nonpolar
Glycine
(Gly or G)
Alanine
(Ala or A)
Valine
(Val or V)
Leucine
(Leu or L)
Isoleucine
(Ile or I)
Methionine
(Met or M)
Phenylalanine
(Phe or F)
Trypotphan
(Trp or W)
Proline
(Pro or P)
Polar
Serine
(Ser or S)
Threonine
(Thr or T)
Cysteine
(Cys or C)
Tyrosine
(Tyr or Y)
Asparagine
(Asn or N)
Glutamine
(Gln or Q)
Electrically
charged
Acidic
Basic
Aspartic acid
(Asp or D)
Glutamic acid
(Glu or E)
Lysine
(Lys or K)
Arginine
(Arg or R)
Histidine
(His or H)
Fig. 5-17a
Nonpolar
Glycine
(Gly or G)
Alanine
(Ala or A)
Valine
(Val or V)
Leucine
(Leu or L)
Isoleucine
(Ile or I)
Methionine
(Met or M)
Phenylalanine
(Phe or F)
Tryptophan
(Trp or W)
Proline
(Pro or P)
Fig. 5-17b
Polar
Asparagine
(Asn or N)
Glutamine
(Gln or Q)
Serine
(Ser or S)
Threonine
(Thr or T)
Cysteine
(Cys or C)
Tyrosine
(Tyr or Y)
Fig. 5-17c
Acidic
Arginine
(Arg or R)
Histidine
(His or H)
Aspartic acid
(Asp or D)
Glutamic acid
(Glu or E)
Lysine
(Lys or K)
Basic
Electrically
charged
Amino Acid Polymers
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Peptide
bond
Fig. 5-18
Amino end
(N-terminus)
Peptide
bond
Side chains
Backbone
Carboxyl end
(C-terminus)
(a)
(b)
Protein Structure and Function
Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Fig. 5-19
A ribbon model of lysozyme
(a)
(b)
A space-filling model of lysozyme
Groove
Groove
Fig. 5-19a
A ribbon model of lysozyme
(a)
Groove
Fig. 5-19b
(b)
A space-filling model of lysozyme
Groove
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Fig. 5-20
Antibody protein
Protein from flu virus
Four Levels of Protein Structure
Animation: Protein Structure Introduction
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Animation: Primary Protein Structure
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Fig. 5-21
Primary
Structure
Secondary
Structure
Tertiary
Structure
pleated sheet
Examples of
amino acid
subunits
+H3N
Amino end
helix
Quaternary
Structure
Fig. 5-21a
Amino acid
subunits
+H3N
Amino end
25
20
15
10
5
1
Primary Structure
Fig. 5-21b
Amino acid
subunits
+H3N
Amino end
Carboxyl end
125
120
115
110
105
100
95
90
85
80
75
20
25
15
10
5
1
Animation: Secondary Protein Structure
Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings
Fig. 5-21c
Secondary Structure
pleated sheet
Examples of
amino acid
subunits
helix
Fig. 5-21d
Abdominal glands of the
spider secrete silk fibers
made of a structural protein
containing pleated sheets.
The radiating strands, made
of dry silk fibers, maintain
the shape of the web.
The spiral strands (capture
strands) are elastic, stretching
in response to wind, rain,
and the touch of insects.
Animation: Tertiary Protein Structure
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Fig. 5-21e
Tertiary Structure
Quaternary Structure
Fig. 5-21f
Polypeptide
backbone
Hydrophobic
interactions and
van der Waals
interactions
Disulfide bridge
Ionic bond
Hydrogen
bond
Fig. 5-21g
Polypeptide
chain
Chains
Heme
Iron
Chains
Collagen
Hemoglobin
Animation: Quaternary Protein Structure
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Sickle-Cell Disease: A Change in �Primary Structure
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Fig. 5-22
Primary
structure
Secondary
and tertiary
structures
Quaternary
structure
Normal
hemoglobin
(top view)
Primary
structure
Secondary
and tertiary
structures
Quaternary
structure
Function
Function
subunit
Molecules do
not associate
with one
another; each
carries oxygen.
Red blood
cell shape
Normal red blood
cells are full of
individual
hemoglobin
moledules, each
carrying oxygen.
10 µm
Normal hemoglobin
1
2
3
4
5
6
7
Val
His
Leu
Thr
Pro
Glu
Glu
Red blood
cell shape
subunit
Exposed
hydrophobic
region
Sickle-cell
hemoglobin
Molecules
interact with
one another and
crystallize into
a fiber; capacity
to carry oxygen
is greatly reduced.
Fibers of abnormal
hemoglobin deform
red blood cell into
sickle shape.
10 µm
Sickle-cell hemoglobin
Glu
Pro
Thr
Leu
His
Val
Val
1
2
3
4
5
6
7
Fig. 5-22a
Primary
structure
Secondary
and tertiary
structures
Function
Quaternary
structure
Molecules do
not associate
with one
another; each
carries oxygen.
Normal
hemoglobin
(top view)
subunit
Normal hemoglobin
7
6
5
4
3
2
1
Glu
Val
His
Leu
Thr
Pro
Glu
Fig. 5-22b
Primary
structure
Secondary
and tertiary
structures
Function
Quaternary
structure
Molecules
interact with
one another and
crystallize into
a fiber; capacity
to carry oxygen
is greatly reduced.
Sickle-cell
hemoglobin
subunit
Sickle-cell hemoglobin
7
6
5
4
3
2
1
Val
Val
His
Leu
Thr
Pro
Glu
Exposed
hydrophobic
region
Fig. 5-22c
Normal red blood
cells are full of
individual
hemoglobin
molecules, each
carrying oxygen.
Fibers of abnormal
hemoglobin deform
red blood cell into
sickle shape.
10 µm
10 µm
What Determines Protein Structure?
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Fig. 5-23
Normal protein
Denatured protein
Denaturation
Renaturation
Protein Folding in the Cell
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Fig. 5-24
Hollow
cylinder
Cap
Chaperonin
(fully assembled)
Polypeptide
Steps of Chaperonin
Action:
An unfolded poly-
peptide enters the
cylinder from one end.
1
2
3
The cap attaches, causing the
cylinder to change shape in
such a way that it creates a
hydrophilic environment for
the folding of the polypeptide.
The cap comes
off, and the properly
folded protein is
released.
Correctly
folded
protein
Fig. 5-24a
Hollow
cylinder
Chaperonin
(fully assembled)
Cap
Fig. 5-24b
Correctly
folded
protein
Polypeptide
Steps of Chaperonin
Action:
1
2
An unfolded poly-
peptide enters the
cylinder from one end.
The cap attaches, causing the
cylinder to change shape in
such a way that it creates a
hydrophilic environment for
the folding of the polypeptide.
The cap comes
off, and the properly
folded protein is
released.
3
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Fig. 5-25
EXPERIMENT
RESULTS
X-ray
source
X-ray
beam
Diffracted
X-rays
Crystal
Digital detector
X-ray diffraction
pattern
RNA
polymerase II
RNA
DNA
Fig. 5-25a
Diffracted
X-rays
EXPERIMENT
X-ray
source
X-ray
beam
Crystal
Digital detector
X-ray diffraction
pattern
Fig. 5-25b
RESULTS
RNA
RNA
polymerase II
DNA
Concept 5.5: Nucleic acids store and transmit hereditary information
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The Roles of Nucleic Acids
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Fig. 5-26-1
mRNA
Synthesis of
mRNA in the
nucleus
DNA
NUCLEUS
CYTOPLASM
1
Fig. 5-26-2
mRNA
Synthesis of
mRNA in the
nucleus
DNA
NUCLEUS
mRNA
CYTOPLASM
Movement of
mRNA into cytoplasm
via nuclear pore
1
2
Fig. 5-26-3
mRNA
Synthesis of
mRNA in the
nucleus
DNA
NUCLEUS
mRNA
CYTOPLASM
Movement of
mRNA into cytoplasm
via nuclear pore
Ribosome
Amino
acids
Polypeptide
Synthesis
of protein
1
2
3
The Structure of Nucleic Acids
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Fig. 5-27
5 end
Nucleoside
Nitrogenous
base
Phosphate
group
Sugar
(pentose)
(b) Nucleotide
(a) Polynucleotide, or nucleic acid
3 end
3C
3C
5C
5C
Nitrogenous bases
Pyrimidines
Cytosine (C)
Thymine (T, in DNA)
Uracil (U, in RNA)
Purines
Adenine (A)
Guanine (G)
Sugars
Deoxyribose (in DNA)
Ribose (in RNA)
(c) Nucleoside components: sugars
Fig. 5-27ab
5' end
5'C
3'C
5'C
3'C
3' end
(a) Polynucleotide, or nucleic acid
(b) Nucleotide
Nucleoside
Nitrogenous
base
3'C
5'C
Phosphate
group
Sugar
(pentose)
Fig. 5-27c-1
(c) Nucleoside components: nitrogenous bases
Purines
Guanine (G)
Adenine (A)
Cytosine (C)
Thymine (T, in DNA)
Uracil (U, in RNA)
Nitrogenous bases
Pyrimidines
Fig. 5-27c-2
Ribose (in RNA)
Deoxyribose (in DNA)
Sugars
(c) Nucleoside components: sugars
Nucleotide Monomers
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Nucleotide Polymers
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The DNA Double Helix
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Fig. 5-28
Sugar-phosphate
backbones
3' end
3' end
3' end
3' end
5' end
5' end
5' end
5' end
Base pair (joined by
hydrogen bonding)
Old strands
New
strands
Nucleotide
about to be
added to a
new strand
DNA and Proteins as Tape Measures of Evolution
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The Theme of Emergent Properties in the Chemistry of Life: A Review�
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Fig. 5-UN2
Fig. 5-UN2a
Fig. 5-UN2b
Fig. 5-UN3
% of glycosidic
linkages broken
100
50
0
Time
Fig. 5-UN4
Fig. 5-UN5
Fig. 5-UN6
Fig. 5-UN7
Fig. 5-UN8
Fig. 5-UN9
Fig. 5-UN10
You should now be able to:
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You should now be able to:
Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings