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Chapter 5

The Structure and Function of Large Biological Molecules

Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings

PowerPoint® Lecture Presentations for Biology

Eighth Edition

Neil Campbell and Jane Reece

Lectures by Chris Romero, updated by Erin Barley with contributions from Joan Sharp

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Overview: The Molecules of Life

  • All living things are made up of four classes of large biological molecules: carbohydrates, lipids, proteins, and nucleic acids
  • Within cells, small organic molecules are joined together to form larger molecules
  • Macromolecules are large molecules composed of thousands of covalently connected atoms
  • Molecular structure and function are inseparable

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Fig. 5-1

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Concept 5.1: Macromolecules are polymers, built from monomers

  • A polymer is a long molecule consisting of many similar building blocks
  • These small building-block molecules are called monomers
  • Three of the four classes of life’s organic molecules are polymers:
    • Carbohydrates
    • Proteins
    • Nucleic acids

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The Synthesis and Breakdown of Polymers

  • A condensation reaction or more specifically a dehydration reaction occurs when two monomers bond together through the loss of a water molecule
  • Enzymes are macromolecules that speed up the dehydration process
  • Polymers are disassembled to monomers by hydrolysis, a reaction that is essentially the reverse of the dehydration reaction

Animation: Polymers

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Fig. 5-2

Short polymer

HO

1

2

3

H

HO

H

Unlinked monomer

Dehydration removes a water

molecule, forming a new bond

HO

H2O

H

1

2

3

4

Longer polymer

(a) Dehydration reaction in the synthesis of a polymer

HO

1

2

3

4

H

H2O

Hydrolysis adds a water

molecule, breaking a bond

HO

H

H

HO

1

2

3

(b) Hydrolysis of a polymer

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Fig. 5-2a

Dehydration removes a water

molecule, forming a new bond

Short polymer

Unlinked monomer

Longer polymer

Dehydration reaction in the synthesis of a polymer

HO

HO

HO

H2O

H

H

H

4

3

2

1

1

2

3

(a)

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Fig. 5-2b

Hydrolysis adds a water

molecule, breaking a bond

Hydrolysis of a polymer

HO

HO

HO

H2O

H

H

H

3

2

1

1

2

3

4

(b)

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The Diversity of Polymers

  • Each cell has thousands of different kinds of macromolecules
  • Macromolecules vary among cells of an organism, vary more within a species, and vary even more between species
  • An immense variety of polymers can be built from a small set of monomers

2

3

HO

H

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Concept 5.2: Carbohydrates serve as fuel and building material

  • Carbohydrates include sugars and the polymers of sugars
  • The simplest carbohydrates are monosaccharides, or single sugars
  • Carbohydrate macromolecules are polysaccharides, polymers composed of many sugar building blocks

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Sugars

  • Monosaccharides have molecular formulas that are usually multiples of CH2O
  • Glucose (C6H12O6) is the most common monosaccharide
  • Monosaccharides are classified by
    • The location of the carbonyl group (as aldose or ketose)
    • The number of carbons in the carbon skeleton

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Fig. 5-3

Dihydroxyacetone

Ribulose

Ketoses

Aldoses

Fructose

Glyceraldehyde

Ribose

Glucose

Galactose

Hexoses (C6H12O6)

Pentoses (C5H10O5)

Trioses (C3H6O3)

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Fig. 5-3a

Aldoses

Glyceraldehyde

Ribose

Glucose

Galactose

Hexoses (C6H12O6)

Pentoses (C5H10O5)

Trioses (C3H6O3)

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Fig. 5-3b

Ketoses

Dihydroxyacetone

Ribulose

Fructose

Hexoses (C6H12O6)

Pentoses (C5H10O5)

Trioses (C3H6O3)

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  • Though often drawn as linear skeletons, in aqueous solutions many sugars form rings
  • Monosaccharides serve as a major fuel for cells and as raw material for building molecules

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Fig. 5-4

(a) Linear and ring forms

(b) Abbreviated ring structure

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Fig. 5-4a

(a) Linear and ring forms

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Fig. 5-4b

(b) Abbreviated ring structure

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  • A disaccharide is formed when a dehydration reaction joins two monosaccharides
  • This covalent bond is called a glycosidic linkage

Animation: Disaccharides

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Fig. 5-5

(b) Dehydration reaction in the synthesis of sucrose

Glucose

Fructose

Sucrose

Maltose

Glucose

Glucose

(a) Dehydration reaction in the synthesis of maltose

1–4

glycosidic

linkage

1–2

glycosidic

linkage

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Polysaccharides

  • Polysaccharides, the polymers of sugars, have storage and structural roles
  • The structure and function of a polysaccharide are determined by its sugar monomers and the positions of glycosidic linkages

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Storage Polysaccharides

  • Starch, a storage polysaccharide of plants, consists entirely of glucose monomers
  • Plants store surplus starch as granules within chloroplasts and other plastids

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Fig. 5-6

(b) Glycogen: an animal polysaccharide

Starch

Glycogen

Amylose

Chloroplast

(a) Starch: a plant polysaccharide

Amylopectin

Mitochondria

Glycogen granules

0.5 µm

1 µm

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  • Glycogen is a storage polysaccharide in animals
  • Humans and other vertebrates store glycogen mainly in liver and muscle cells

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Structural Polysaccharides

  • The polysaccharide cellulose is a major component of the tough wall of plant cells
  • Like starch, cellulose is a polymer of glucose, but the glycosidic linkages differ
  • The difference is based on two ring forms for glucose: alpha (α) and beta (β)

Animation: Polysaccharides

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Fig. 5-7

(a)  and  glucose

ring structures

 Glucose

 Glucose

(b) Starch: 1–4 linkage of  glucose monomers

(b) Cellulose: 1–4 linkage of  glucose monomers

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Fig. 5-7a

(a)  and  glucose ring structures

 Glucose

 Glucose

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Fig. 5-7bc

(b) Starch: 1–4 linkage of  glucose monomers

(c) Cellulose: 1–4 linkage of  glucose monomers

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    • Polymers with α glucose are helical
    • Polymers with β glucose are straight
    • In straight structures, H atoms on one strand can bond with OH groups on other strands
    • Parallel cellulose molecules held together this way are grouped into microfibrils, which form strong building materials for plants

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Fig. 5-8

  • Glucose

monomer

Cellulose

molecules

Microfibril

Cellulose

microfibrils

in a plant

cell wall

0.5 µm

10 µm

Cell walls

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  • Enzymes that digest starch by hydrolyzing α linkages can’t hydrolyze β linkages in cellulose
  • Cellulose in human food passes through the digestive tract as insoluble fiber
  • Some microbes use enzymes to digest cellulose
  • Many herbivores, from cows to termites, have symbiotic relationships with these microbes

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Fig. 5-9

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  • Chitin, another structural polysaccharide, is found in the exoskeleton of arthropods
  • Chitin also provides structural support for the cell walls of many fungi

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Fig. 5-10

The structure

of the chitin

monomer.

(a)

(b)

(c)

Chitin forms the

exoskeleton of

arthropods.

Chitin is used to make

a strong and flexible

surgical thread.

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Concept 5.3: Lipids are a diverse group of hydrophobic molecules

  • Lipids are the one class of large biological molecules that do not form polymers
  • The unifying feature of lipids is having little or no affinity for water
  • Lipids are hydrophobic because they consist mostly of hydrocarbons, which form nonpolar covalent bonds
  • The most biologically important lipids are fats, phospholipids, and steroids

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Fats

  • Fats are constructed from two types of smaller molecules: glycerol and fatty acids
  • Glycerol is a three-carbon alcohol with a hydroxyl group attached to each carbon
  • A fatty acid consists of a carboxyl group attached to a long carbon skeleton

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Fig. 5-11

Fatty acid

(palmitic acid)

Glycerol

(a) Dehydration reaction in the synthesis of a fat

Ester linkage

(b) Fat molecule (triacylglycerol)

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Fig. 5-11a

Fatty acid

(palmitic acid)

(a)

Dehydration reaction in the synthesis of a fat

Glycerol

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Fig. 5-11b

(b)

Fat molecule (triacylglycerol)

Ester linkage

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    • Fats separate from water because water molecules form hydrogen bonds with each other and exclude the fats
    • In a fat, three fatty acids are joined to glycerol by an ester linkage, creating a triacylglycerol, or triglyceride

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  • Fatty acids vary in length (number of carbons) and in the number and locations of double bonds
  • Saturated fatty acids have the maximum number of hydrogen atoms possible and no double bonds
  • Unsaturated fatty acids have one or more double bonds

Animation: Fats

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Fig. 5-12

Structural

formula of a

saturated fat

molecule

Stearic acid, a

saturated fatty

acid

(a) Saturated fat

Structural formula

of an unsaturated

fat molecule

Oleic acid, an

unsaturated

fatty acid

(b) Unsaturated fat

cis double

bond causes

bending

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Fig. 5-12a

(a)

Saturated fat

Structural

formula of a

saturated fat

molecule

Stearic acid, a

saturated fatty

acid

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Fig. 5-12b

(b)

Unsaturated fat

Structural formula

of an unsaturated

fat molecule

Oleic acid, an

unsaturated

fatty acid

cis double

bond causes

bending

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  • Fats made from saturated fatty acids are called saturated fats, and are solid at room temperature
  • Most animal fats are saturated
  • Fats made from unsaturated fatty acids are called unsaturated fats or oils, and are liquid at room temperature
  • Plant fats and fish fats are usually unsaturated

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  • A diet rich in saturated fats may contribute to cardiovascular disease through plaque deposits
  • Hydrogenation is the process of converting unsaturated fats to saturated fats by adding hydrogen
  • Hydrogenating vegetable oils also creates unsaturated fats with trans double bonds
  • These trans fats may contribute more than saturated fats to cardiovascular disease

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  • The major function of fats is energy storage
  • Humans and other mammals store their fat in adipose cells
  • Adipose tissue also cushions vital organs and insulates the body

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Phospholipids

  • In a phospholipid, two fatty acids and a phosphate group are attached to glycerol
  • The two fatty acid tails are hydrophobic, but the phosphate group and its attachments form a hydrophilic head

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Fig. 5-13

(b)

Space-filling model

(a)

(c)

Structural formula

Phospholipid symbol

Fatty acids

Hydrophilic

head

Hydrophobic

tails

Choline

Phosphate

Glycerol

Hydrophobic tails

Hydrophilic head

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Fig. 5-13ab

(b)

Space-filling model

(a)

Structural formula

Fatty acids

Choline

Phosphate

Glycerol

Hydrophobic tails

Hydrophilic head

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  • When phospholipids are added to water, they self-assemble into a bilayer, with the hydrophobic tails pointing toward the interior
  • The structure of phospholipids results in a bilayer arrangement found in cell membranes
  • Phospholipids are the major component of all cell membranes

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Fig. 5-14

Hydrophilic

head

Hydrophobic

tail

WATER

WATER

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Steroids

  • Steroids are lipids characterized by a carbon skeleton consisting of four fused rings
  • Cholesterol, an important steroid, is a component in animal cell membranes
  • Although cholesterol is essential in animals, high levels in the blood may contribute to cardiovascular disease

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Fig. 5-15

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Concept 5.4: Proteins have many structures, resulting in a wide range of functions

  • Proteins account for more than 50% of the dry mass of most cells
  • Protein functions include structural support, storage, transport, cellular communications, movement, and defense against foreign substances

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Table 5-1

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Animation: Structural Proteins

Animation: Storage Proteins

Animation: Transport Proteins

Animation: Receptor Proteins

Animation: Contractile Proteins

Animation: Defensive Proteins

Animation: Hormonal Proteins

Animation: Sensory Proteins

Animation: Gene Regulatory Proteins

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  • Enzymes are a type of protein that acts as a catalyst to speed up chemical reactions
  • Enzymes can perform their functions repeatedly, functioning as workhorses that carry out the processes of life

Animation: Enzymes

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Fig. 5-16

Enzyme

(sucrase)

Substrate

(sucrose)

Fructose

Glucose

OH

H

O

H2O

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Polypeptides

  • Polypeptides are polymers built from the same set of 20 amino acids
  • A protein consists of one or more polypeptides

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Amino Acid Monomers

  • Amino acids are organic molecules with carboxyl and amino groups
  • Amino acids differ in their properties due to differing side chains, called R groups

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Fig. 5-UN1

Amino

group

Carboxyl

group

 carbon

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Fig. 5-17

Nonpolar

Glycine

(Gly or G)

Alanine

(Ala or A)

Valine

(Val or V)

Leucine

(Leu or L)

Isoleucine

(Ile or I)

Methionine

(Met or M)

Phenylalanine

(Phe or F)

Trypotphan

(Trp or W)

Proline

(Pro or P)

Polar

Serine

(Ser or S)

Threonine

(Thr or T)

Cysteine

(Cys or C)

Tyrosine

(Tyr or Y)

Asparagine

(Asn or N)

Glutamine

(Gln or Q)

Electrically

charged

Acidic

Basic

Aspartic acid

(Asp or D)

Glutamic acid

(Glu or E)

Lysine

(Lys or K)

Arginine

(Arg or R)

Histidine

(His or H)

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Fig. 5-17a

Nonpolar

Glycine

(Gly or G)

Alanine

(Ala or A)

Valine

(Val or V)

Leucine

(Leu or L)

Isoleucine

(Ile or I)

Methionine

(Met or M)

Phenylalanine

(Phe or F)

Tryptophan

(Trp or W)

Proline

(Pro or P)

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Fig. 5-17b

Polar

Asparagine

(Asn or N)

Glutamine

(Gln or Q)

Serine

(Ser or S)

Threonine

(Thr or T)

Cysteine

(Cys or C)

Tyrosine

(Tyr or Y)

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Fig. 5-17c

Acidic

Arginine

(Arg or R)

Histidine

(His or H)

Aspartic acid

(Asp or D)

Glutamic acid

(Glu or E)

Lysine

(Lys or K)

Basic

Electrically

charged

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Amino Acid Polymers

  • Amino acids are linked by peptide bonds
  • A polypeptide is a polymer of amino acids
  • Polypeptides range in length from a few to more than a thousand monomers
  • Each polypeptide has a unique linear sequence of amino acids

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Peptide

bond

Fig. 5-18

Amino end

(N-terminus)

Peptide

bond

Side chains

Backbone

Carboxyl end

(C-terminus)

(a)

(b)

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Protein Structure and Function

  • A functional protein consists of one or more polypeptides twisted, folded, and coiled into a unique shape

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Fig. 5-19

A ribbon model of lysozyme

(a)

(b)

A space-filling model of lysozyme

Groove

Groove

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Fig. 5-19a

A ribbon model of lysozyme

(a)

Groove

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Fig. 5-19b

(b)

A space-filling model of lysozyme

Groove

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  • The sequence of amino acids determines a protein’s three-dimensional structure
  • A protein’s structure determines its function

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Fig. 5-20

Antibody protein

Protein from flu virus

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Four Levels of Protein Structure

  • The primary structure of a protein is its unique sequence of amino acids
  • Secondary structure, found in most proteins, consists of coils and folds in the polypeptide chain
  • Tertiary structure is determined by interactions among various side chains (R groups)
  • Quaternary structure results when a protein consists of multiple polypeptide chains

Animation: Protein Structure Introduction

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  • Primary structure, the sequence of amino acids in a protein, is like the order of letters in a long word
  • Primary structure is determined by inherited genetic information

Animation: Primary Protein Structure

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Fig. 5-21

Primary

Structure

Secondary

Structure

Tertiary

Structure

 pleated sheet

Examples of

amino acid

subunits

+H3N

Amino end

 helix

Quaternary

Structure

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Fig. 5-21a

Amino acid

subunits

+H3N

Amino end

25

20

15

10

5

1

Primary Structure

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Fig. 5-21b

Amino acid

subunits

+H3N

Amino end

Carboxyl end

125

120

115

110

105

100

95

90

85

80

75

20

25

15

10

5

1

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  • The coils and folds of secondary structure result from hydrogen bonds between repeating constituents of the polypeptide backbone
  • Typical secondary structures are a coil called an α helix and a folded structure called a β pleated sheet

Animation: Secondary Protein Structure

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Fig. 5-21c

Secondary Structure

 pleated sheet

Examples of

amino acid

subunits

 helix

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Fig. 5-21d

Abdominal glands of the

spider secrete silk fibers

made of a structural protein

containing  pleated sheets.

The radiating strands, made

of dry silk fibers, maintain

the shape of the web.

The spiral strands (capture

strands) are elastic, stretching

in response to wind, rain,

and the touch of insects.

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  • Tertiary structure is determined by interactions between R groups, rather than interactions between backbone constituents
  • These interactions between R groups include hydrogen bonds, ionic bonds, hydrophobic interactions, and van der Waals interactions
  • Strong covalent bonds called disulfide bridges may reinforce the protein’s structure

Animation: Tertiary Protein Structure

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Fig. 5-21e

Tertiary Structure

Quaternary Structure

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Fig. 5-21f

Polypeptide

backbone

Hydrophobic

interactions and

van der Waals

interactions

Disulfide bridge

Ionic bond

Hydrogen

bond

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Fig. 5-21g

Polypeptide

chain

 Chains

Heme

Iron

 Chains

Collagen

Hemoglobin

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  • Quaternary structure results when two or more polypeptide chains form one macromolecule
  • Collagen is a fibrous protein consisting of three polypeptides coiled like a rope
  • Hemoglobin is a globular protein consisting of four polypeptides: two alpha and two beta chains

Animation: Quaternary Protein Structure

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Sickle-Cell Disease: A Change in �Primary Structure

  • A slight change in primary structure can affect a protein’s structure and ability to function
  • Sickle-cell disease, an inherited blood disorder, results from a single amino acid substitution in the protein hemoglobin

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Fig. 5-22

Primary

structure

Secondary

and tertiary

structures

Quaternary

structure

Normal

hemoglobin

(top view)

Primary

structure

Secondary

and tertiary

structures

Quaternary

structure

Function

Function

 subunit

Molecules do

not associate

with one

another; each

carries oxygen.

Red blood

cell shape

Normal red blood

cells are full of

individual

hemoglobin

moledules, each

carrying oxygen.

10 µm

Normal hemoglobin

1

2

3

4

5

6

7

Val

His

Leu

Thr

Pro

Glu

Glu

Red blood

cell shape

 subunit

Exposed

hydrophobic

region

Sickle-cell

hemoglobin

Molecules

interact with

one another and

crystallize into

a fiber; capacity

to carry oxygen

is greatly reduced.

Fibers of abnormal

hemoglobin deform

red blood cell into

sickle shape.

10 µm

Sickle-cell hemoglobin

Glu

Pro

Thr

Leu

His

Val

Val

1

2

3

4

5

6

7

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Fig. 5-22a

Primary

structure

Secondary

and tertiary

structures

Function

Quaternary

structure

Molecules do

not associate

with one

another; each

carries oxygen.

Normal

hemoglobin

(top view)

 subunit

Normal hemoglobin

7

6

5

4

3

2

1

Glu

Val

His

Leu

Thr

Pro

Glu

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Fig. 5-22b

Primary

structure

Secondary

and tertiary

structures

Function

Quaternary

structure

Molecules

interact with

one another and

crystallize into

a fiber; capacity

to carry oxygen

is greatly reduced.

Sickle-cell

hemoglobin

 subunit

Sickle-cell hemoglobin

7

6

5

4

3

2

1

Val

Val

His

Leu

Thr

Pro

Glu

Exposed

hydrophobic

region

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Fig. 5-22c

Normal red blood

cells are full of

individual

hemoglobin

molecules, each

carrying oxygen.

Fibers of abnormal

hemoglobin deform

red blood cell into

sickle shape.

10 µm

10 µm

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What Determines Protein Structure?

  • In addition to primary structure, physical and chemical conditions can affect structure
  • Alterations in pH, salt concentration, temperature, or other environmental factors can cause a protein to unravel
  • This loss of a protein’s native structure is called denaturation
  • A denatured protein is biologically inactive

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Fig. 5-23

Normal protein

Denatured protein

Denaturation

Renaturation

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Protein Folding in the Cell

  • It is hard to predict a protein’s structure from its primary structure
  • Most proteins probably go through several states on their way to a stable structure
  • Chaperonins are protein molecules that assist the proper folding of other proteins

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Fig. 5-24

Hollow

cylinder

Cap

Chaperonin

(fully assembled)

Polypeptide

Steps of Chaperonin

Action:

An unfolded poly-

peptide enters the

cylinder from one end.

1

2

3

The cap attaches, causing the

cylinder to change shape in

such a way that it creates a

hydrophilic environment for

the folding of the polypeptide.

The cap comes

off, and the properly

folded protein is

released.

Correctly

folded

protein

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Fig. 5-24a

Hollow

cylinder

Chaperonin

(fully assembled)

Cap

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Fig. 5-24b

Correctly

folded

protein

Polypeptide

Steps of Chaperonin

Action:

1

2

An unfolded poly-

peptide enters the

cylinder from one end.

The cap attaches, causing the

cylinder to change shape in

such a way that it creates a

hydrophilic environment for

the folding of the polypeptide.

The cap comes

off, and the properly

folded protein is

released.

3

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  • Scientists use X-ray crystallography to determine a protein’s structure
  • Another method is nuclear magnetic resonance (NMR) spectroscopy, which does not require protein crystallization
  • Bioinformatics uses computer programs to predict protein structure from amino acid sequences

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Fig. 5-25

EXPERIMENT

RESULTS

X-ray

source

X-ray

beam

Diffracted

X-rays

Crystal

Digital detector

X-ray diffraction

pattern

RNA

polymerase II

RNA

DNA

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Fig. 5-25a

Diffracted

X-rays

EXPERIMENT

X-ray

source

X-ray

beam

Crystal

Digital detector

X-ray diffraction

pattern

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Fig. 5-25b

RESULTS

RNA

RNA

polymerase II

DNA

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Concept 5.5: Nucleic acids store and transmit hereditary information

  • The amino acid sequence of a polypeptide is programmed by a unit of inheritance called a gene
  • Genes are made of DNA, a nucleic acid

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The Roles of Nucleic Acids

  • There are two types of nucleic acids:
    • Deoxyribonucleic acid (DNA)
    • Ribonucleic acid (RNA)
  • DNA provides directions for its own replication
  • DNA directs synthesis of messenger RNA (mRNA) and, through mRNA, controls protein synthesis
  • Protein synthesis occurs in ribosomes

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Fig. 5-26-1

mRNA

Synthesis of

mRNA in the

nucleus

DNA

NUCLEUS

CYTOPLASM

1

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Fig. 5-26-2

mRNA

Synthesis of

mRNA in the

nucleus

DNA

NUCLEUS

mRNA

CYTOPLASM

Movement of

mRNA into cytoplasm

via nuclear pore

1

2

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Fig. 5-26-3

mRNA

Synthesis of

mRNA in the

nucleus

DNA

NUCLEUS

mRNA

CYTOPLASM

Movement of

mRNA into cytoplasm

via nuclear pore

Ribosome

Amino

acids

Polypeptide

Synthesis

of protein

1

2

3

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The Structure of Nucleic Acids

  • Nucleic acids are polymers called polynucleotides
  • Each polynucleotide is made of monomers called nucleotides
  • Each nucleotide consists of a nitrogenous base, a pentose sugar, and a phosphate group
  • The portion of a nucleotide without the phosphate group is called a nucleoside

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Fig. 5-27

5 end

Nucleoside

Nitrogenous

base

Phosphate

group

Sugar

(pentose)

(b) Nucleotide

(a) Polynucleotide, or nucleic acid

3 end

3C

3C

5C

5C

Nitrogenous bases

Pyrimidines

Cytosine (C)

Thymine (T, in DNA)

Uracil (U, in RNA)

Purines

Adenine (A)

Guanine (G)

Sugars

Deoxyribose (in DNA)

Ribose (in RNA)

(c) Nucleoside components: sugars

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Fig. 5-27ab

5' end

5'C

3'C

5'C

3'C

3' end

(a) Polynucleotide, or nucleic acid

(b) Nucleotide

Nucleoside

Nitrogenous

base

3'C

5'C

Phosphate

group

Sugar

(pentose)

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Fig. 5-27c-1

(c) Nucleoside components: nitrogenous bases

Purines

Guanine (G)

Adenine (A)

Cytosine (C)

Thymine (T, in DNA)

Uracil (U, in RNA)

Nitrogenous bases

Pyrimidines

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Fig. 5-27c-2

Ribose (in RNA)

Deoxyribose (in DNA)

Sugars

(c) Nucleoside components: sugars

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Nucleotide Monomers

  • Nucleoside = nitrogenous base + sugar
  • There are two families of nitrogenous bases:
    • Pyrimidines (cytosine, thymine, and uracil) have a single six-membered ring
    • Purines (adenine and guanine) have a six-membered ring fused to a five-membered ring
  • In DNA, the sugar is deoxyribose; in RNA, the sugar is ribose
  • Nucleotide = nucleoside + phosphate group

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Nucleotide Polymers

  • Nucleotide polymers are linked together to build a polynucleotide
  • Adjacent nucleotides are joined by covalent bonds that form between the –OH group on the 3 carbon of one nucleotide and the phosphate on the 5 carbon on the next
  • These links create a backbone of sugar-phosphate units with nitrogenous bases as appendages
  • The sequence of bases along a DNA or mRNA polymer is unique for each gene

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The DNA Double Helix

  • A DNA molecule has two polynucleotides spiraling around an imaginary axis, forming a double helix
  • In the DNA double helix, the two backbones run in opposite 5 → 3 directions from each other, an arrangement referred to as antiparallel
  • One DNA molecule includes many genes
  • The nitrogenous bases in DNA pair up and form hydrogen bonds: adenine (A) always with thymine (T), and guanine (G) always with cytosine (C)

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Fig. 5-28

Sugar-phosphate

backbones

3' end

3' end

3' end

3' end

5' end

5' end

5' end

5' end

Base pair (joined by

hydrogen bonding)

Old strands

New

strands

Nucleotide

about to be

added to a

new strand

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DNA and Proteins as Tape Measures of Evolution

  • The linear sequences of nucleotides in DNA molecules are passed from parents to offspring
  • Two closely related species are more similar in DNA than are more distantly related species
  • Molecular biology can be used to assess evolutionary kinship

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The Theme of Emergent Properties in the Chemistry of Life: A Review�

  • Higher levels of organization result in the emergence of new properties
  • Organization is the key to the chemistry of life

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Fig. 5-UN2

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Fig. 5-UN2a

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Fig. 5-UN2b

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Fig. 5-UN3

% of glycosidic

linkages broken

100

50

0

Time

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Fig. 5-UN4

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Fig. 5-UN5

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Fig. 5-UN6

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Fig. 5-UN7

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Fig. 5-UN8

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Fig. 5-UN9

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Fig. 5-UN10

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You should now be able to:

  1. List and describe the four major classes of molecules
  2. Describe the formation of a glycosidic linkage and distinguish between monosaccharides, disaccharides, and polysaccharides
  3. Distinguish between saturated and unsaturated fats and between cis and trans fat molecules
  4. Describe the four levels of protein structure

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You should now be able to:

  1. Distinguish between the following pairs: pyrimidine and purine, nucleotide and nucleoside, ribose and deoxyribose, the 5 end and 3 end of a nucleotide

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