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IMAG/MSM Working Group on Multiscale Modeling and Viral Pandemics Mini Seminars

April 14, 2022

Welcome - The meeting will start at 3PM ET

 

NOTE: THE MEETING WILL BE RECORDED, STREAMED AND PUBLICLY AVAILABLE�FOR THOSE UNABLE TO ATTEND

Agenda

  1. Welcome
  2. Links, people, other info
  3. Social media links
  4. Quick Announcements
  5. Upcoming Mini-Seminars and Request for Future Speakers
  6. Natasha D Sheybani, University of Virginia. �Ushering Therapeutic Sound Waves into the Era of Precision Cancer Immuno-Oncology
  7. Joao Xavier, Memorial Sloan Kettering Cancer Center. �Modeling species interaction in the gut microbiota using data from hospitalized patients
  8. Request for Further Business

 

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People

Co-Lead: Reinhard Laubenbacher, PhD

Department of Medicine

Laboratory for Systems Medicine

University of Florida

reinhard.laubenbacher@medicine.ufl.edu

Co-Lead: James A. Glazier, PhD

Dept. of Intelligent Systems Engineering and Biocomplexity Institute

Indiana University, Bloomington

jaglazier@gmail.com

Web Administration, Slack: James P. Sluka, PhD

Dept. of Intelligent Systems Engineering and Biocomplexity Institute

Indiana University, Bloomington

jsluka@indiana.edu

Activities Coordination: Lorenzo Veschini, PhD

King’s College London

lorenzo.veschini@gmail.com

 

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Please follow the�group on Twitter!

https://twitter.com/MsmViral

If you could re-tweet the weekly announcements �(there are usually two, one for each speaker) �that would help boost attendance and community awareness.

 

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Announcements

Any short (~1 minute) items such as;

  • announcements
  • meetings
  • funding
  • publications
  • requests for help

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Schedule for Upcoming Meetings and mini-Seminars

April 21:

  1. Daniel Reeves, Fred Hutchinson Cancer Research Center.
  2. Nitin Baliga, Institute for system biology.

April 28:

  1. Lucas Bottcher, Frankfurt School for finance & Management, UCLA �Title: AI Pontryagin or: How Neural Networks Learn to Control Dynamical Systems
  2. David Gibbs, Institute for Systems Biology, Seattle, WA. �Title: Patient specific cell-cell networks suggest important links in disease progression

May 5:

  1. TBD
  2. TBD

Request for future speakers (May 5, …)

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Mini-Seminar Ushering Therapeutic Sound Waves into the Era of �Precision Cancer Immuno-Oncology

Natasha D Sheybani�University of Virginia

Despite the promise of cancer immunotherapy, a significant fraction of cancer patients are yet unable to realize its unparalleled benefits. Focused ultrasound (FUS) is a versatile, emerging technology for the non-invasive, non-ionizing, and precisely targeted deposition of acoustic energy into tumor tissues. Recent years have unveiled the capacity of FUS to potentiate cancer immunotherapy through immuno-modulation and targeted drug delivery. In this talk, I will discuss our translational efforts to systematically interrogate the impact of thermal and mechanical FUS regimes on immunological sequelae and extracellular vesicles in solid tumor settings (e.g. metastatic breast cancer, glioblastoma). I will also introduce our goal of ushering FUS into the era of precision immuno-oncology using advanced imaging, liquid biopsy, and artificial intelligence.

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Mini-SeminarModeling species interaction in the gut microbiota �using data from hospitalized patients

Joao XavierMemorial Sloan Kettering Cancer Center

The gut microbiota is a microbial ecosystem amenable to mathematical modeling. We will discuss our work at the Memorial Sloan-Kettering Cancer Center where we use data from patients to quantify the ecological interactions. The data consists of timeseries of microbial populations and clinical metadata such as the antibiotics given to patients and their number of white blood cells on each day. The model reveals which microbes are most important for patient immunity. Studying ecology directly from patient data can help drive new treatments to modulate immunity by engineering the gut microbiome.

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Requests for Input/Suggestions

  

 

We would like the subgroup leads to prepare brief presentations for the Thursday meetings, please let us know when you would like to present

Ideas/help for publicising our Thursday mini-seminars more effectively and for speakers to invite

Suggestions for agenda items and approaches to organizing the Steering Committee Meetings more effectively

There have also been a number of requests for more explicit statements of goals and tasks from the WG leadership, we would appreciate your suggestions

Please contact Reinhard Laubenbacher, James Glazier, James Sluka or Lorenzo Veschini with your ideas on all of these issues

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