Introduction to Pharmacokinetics��Novartis-Academia Hackathon
Andrew Stein, PhD
Associate Director Pharmacometrics
Cambridge, MA August 2019
Pharmacometrics
Pharmacometrics
Overview
Pharmacometrics
Acknowledgements�(Based on material from)
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Pharmacometrics
Motivation – the importance of finding the right dose of a drug
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(paracetamol)
Pharmacometrics
The “PKPD” pathway of drug effect
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Absorbed by intestines into blood
Distribute from blood into tissue
Binds target �in tissue
Effects
Oral Dose
Elimination
from body
Pharmacokinetics (PK):
How body affects drug
Pharmacodynamics (PD):
How drug affects body
Should children and adults receive the same dose?
What dose is needed to shrink a tumor without causing severe neutropenia
Drug Concentration
Measurement
Pharmacometrics
Measuring PKPD
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PK (Pharmacokinetics) example
Measurement of drug concentration from circulation
PD (Pharmacodynamics) example
Change in tumor size, as measured by X-Ray
Dose Regimen
Pharmacometrics
Understanding PKPD can help in picking the optimal dose regimen
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From Rowland and Tozer
Drug doesn’t work
Drug is too toxic
Pharmacometrics
Types of Drugs
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Small Molecule
Antibody
Cell Based
Therapies
Humira
Keytruda
Aspirin
Tylenol
Kymriah
Stem Cell Transplant
~1 nm
500 Da
~10 nm
150,000 Da
100,000 nm
~1014 Da
Pharmacometrics
Introduction to Pharmacokinetics
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Pharmacometrics
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Why Do We Measure Blood or Plasma Concentrations When the Site of Action is Someplace Else?
Pharmacometrics
Key process of pharmacokinetics�(ADME)
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Pharmacometrics
Volume of Distribution
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Pharmacometrics
Key Lessons
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Pharmacometrics
Definition of dose and concentration
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Dose
Measurement: Mass
Units: mg
Concentration (C)
Measurement: Mass/Volume
Units: mg/ml
Key Formula
Right after IV dosing (time = 0)
C(0) = Dose/V → V = Dose/C0
Volume (V)
“Theoretical Volume” needed to contain administered drug at the measured concentration
Pharmacometrics
Volume of distribution example�C0 = Dose/V or Dose=C0·V
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Drug Concentration
in Beaker
From Pete Bonate
Drug Concentration
with Activated Charcoal
(absorbs drug)
Dose = 1000 mg
C0 = 0.2 mg/mL
V = 5000 mL
Dose = 1000 mg
C0 = 20 mg/mL
V = 50 mL
Pharmacometrics
Volumes for different drugs
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Erythropoietin
Chloroquine
Morphine
Erythromycin
Doxorubicin
10,000
1000
100
10
Volume (L)
~ Dose/C(0)
Drug
Blood Volume = 5
Total Body Water = 42
Total Body = 70
Pembrolizumab (antibody)
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Pharmacometrics
How can chloroquine have a volume of 10,000L, the size of an X?
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https://www.watertankfactory.com.au/water-tanks/r10000-litre-rainwater-tank/
10,000 L
Pharmacometrics
Key Lessons
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Pharmacometrics
Pharmacokinetics after single intravenous bolus dose
Part 1 – focus on elimination (ignore distribution)
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Pharmacometrics
Examples of intravenous drugs
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Pharmacometrics
Drug concentration over time
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Dose = 10 mg
C0 = 0.04 mg/L
V = Dose/C0
= 250 L
Pharmacometrics
Drug concentration over time�Log scale
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Dose = 10 mg
C0 = 0.04 mg/L
V = 250 L
k
k = 0.23/h
= elimination rate
units = 1/time
Pharmacometrics
Half-life definition – how long for half of drug to be eliminated
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k
How long does it take for half the drug to be eliminated?
At what time does:
Pharmacometrics
Half-life example
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k = 0.23/h
Every 3 hours,
concentration declines by half
0.04 (100%)
0.02 (50%)
0.01 (25%)
0.005 (12%)
0.0025 (6%)
0.00125 (3%)
Pharmacometrics
The shorter the terminal half-life, the more frequently the drug is dosed
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Name | Half-life | Dose Frequency |
Tylenol | 3 hours | 4 per day |
Aleve | 14 hours | 2 per day |
Keytruda | 25 days | 1 per 3 weeks |
Dosing interval also depends on duration of effect
Pharmacometrics
SEE QUIZ QUESTIONS
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Pharmacometrics
Compartmental Model
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A
Rate of change of amount in body
Dose
k
Pharmacometrics
Mathematical introduction to Clearance [L/h]
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Clearance is a flow rate of plasma that is completely eliminated of drug
Pharmacometrics
Mechanical Analogy
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From Leon Aarons
Vessel
Pump
Volume (V)
Concentration (C)
Flow rate
Metabolizer (Liver)
Filter (Kidney)
Pump (Heart)
Filter
Pharmacometrics
Mechanical Analogy
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From Leon Aarons
Vessel
Pump
Dose
Volume (V)
Metabolizer (Liver)
Filter (Kidney)
Pump (Heart)
If filter eliminates all drug that passes through, then CL is the flow rate
Concentration (C)
Flow rate (CL)
Perfect
Filter
Pharmacometrics
Clearance is the most important PK parameter
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Pharmacometrics
Clearance is helpful in understanding the average concentration at steady state
Pharmacometrics
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Total drug in = Total drug out
If clearance does not depend on concentration (linear)
Formula doesn’t depend on specific model for C(t), Volume or half-life. It only requires linear clearance
Pharmacometrics
Major Sites of Elimination
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Kidneys
From Pete Bonate
Liver
Lysosome
Mainly metabolism
Mainly excretion
(urine)
Proteolysis
(in cells)
Small Molecules
Biologics
All cells
Pharmacometrics
Proteins in general are eliminated through lysosomal degradation
mAb PMX Overview | Business Use Only
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U
This process can occur in many tissues. Endothelial cells is one major location
AS
Uptake via fluid phase or receptor
In lysosome, proteins are degraded
Cell Membrane
Pharmacometrics
Function of Kidneys
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From Pete Bonate
Pharmacometrics
Phase 1 Metabolism: add small polar groups. Hydroxylation
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From Pete Bonate
Pharmacometrics
Phase 2 Metabolism: add larger polar molecules
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From Pete Bonate
Pharmacometrics
Metabolic Pathways Can Be Complex and Consist of Both Phase 1 and Phase 2 Pathways
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From Pete Bonate
Pharmacometrics
Cytochrome P450 (CYP)�metabolizes drug
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From Pete Bonate
Pharmacometrics
Nonlinear pharmacokinetics occurs at “critical concentration” = Ccrit
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Ccrit
Burmester, G. R. et al. Mavrilimumab, a human monoclonal antibody targeting gm-csf receptor-α, in subjects with rheumatoid arthritis: a randomised, double-blind, placebo- controlled, phase I first-in-human study. Annals of the rheumatic diseases 70, 1542–1549 (2011).
Pharmacometrics
If route of elimination saturates, elimination is reduced
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At small concentrations,
At large concentrations,
Faster elimination at lower concentrations
Pharmacometrics
“Derivation” for Ccrit
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For large doses (and concentrations), C ≫ Km
Define Ccrit to be where the linear (CL·C) and nonlinear (Vm) components contribute equally to total elimination
Stein, Andrew M., and Lambertus A. Peletier. "Predicting the Onset of Nonlinear Pharmacokinetics." CPT: pharmacometrics & systems pharmacology 7.10 (2018): 670-677.
Pharmacometrics
Nonlinear pharmacokinetics occurs at “critical concentration” = Ccrit
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AM Stein and L Peletier, to appear in CPT:PSP (2018)
Pharmacometrics is a relatively young field.
There are opportunities to analyze simple models and contribute to understanding
Pharmacometrics
SEE QUIZ QUESTIONS
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Pharmacometrics
Key Lessons
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Pharmacometrics
Continuous Dosing: Infusion
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Pharmacometrics
Continuous infusion
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A
Dose Rate (R0, mg/h)
k
Pharmacometrics
Continuous infusion
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Pharmacometrics
Continuous infusion
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CSS
Pharmacometrics
Continuous infusion
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CSS
Pharmacometrics
At what time do you reach steady state?
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CSS
Pharmacometrics
Key Lesson: Sensitivity
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Pharmacometrics
Repeated Dosing - Bolus
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Pharmacometrics
Repeated dosing
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Similar to infusion dose
Define τ to be the dosing interval
τ
τ
Pharmacometrics
Recall formula for single bolus dose and amend for dose at another time
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C1 is the response of a single dose at time 0
Pharmacometrics
Each dose contributes one “bolus dose” term
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Concentration
Time (τ)
During first dose (time 0-τ)
During second dose (τ-2τ)
During third dose (2τ-3τ)
0 1 2 3
Pharmacometrics
The general formula for N doses
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Pharmacometrics
This formula is a geometric series
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As N 🡪 ∞
Pharmacometrics
Formulas for Cmax,ss and Cmin,ss
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What about average concentration Cavg,ss?
Recall that k and C0 depends on both V and CL
Pharmacometrics
Formula for Cavg,ss (for linear PK)
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Total drug in = Total drug out
If clearance doesn’t depend on concentration (linear)
Formula doesn’t depend on specific model for C(t)
It only requires linear clearance
Pharmacometrics
Repeated dosing similar to infusion
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τ
Infusion Rate ~ Dose Rate
Pharmacometrics
Cool and useful result:�AUC0-∞ = AUCτ
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Pharmacometrics
AUC0-∞ = AUCτ �Graphical Demonstration
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Dose N
Dose N-1
Dose N-2
Dose N-3
Dose N
Dose N-1
Dose N-2
Dose N-3
All earlier
doses
Pharmacometrics
AUC0-∞ = AUCτ�Mathematical Demonstration
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Pharmacometrics
Key Insights
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Pharmacometrics
SEE QUIZ QUESTIONS
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Pharmacometrics
Distribution
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Pharmacometrics
Distribution
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From Leon Aarons
Systemic Circulation
Other
Tissues
Distribution
Pharmacometrics
Factors that can effect distribution
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From Leon Aarons
Pharmacometrics
Profile of a single dose (Linear Space)
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Dose = 10 mg
C0 = 0.055 mg/L
Pharmacometrics
Profile of a single dose (Log Space)
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Dose = 10 mg
C0 = 0.55 mg/L
V1 = Dose/C0
= 18 L
α = initial decline
= 12/h
β = terminal slope
= 0.5/h
t1/2β = 1.4 h
α
β
Pharmacometrics
Compartmental Model formulation
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A1
Rate of change of amount in each compartment
Dose
k10
A2
k12
k21
Pharmacometrics
Finding the analytical solution
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M
α and β are the eigenvalues of M
A and B come from the eigenvectors of M and the initial dose
Details in www.pfim.biostat.fr/PFIM_PKPD_library.pdf
Pharmacometrics
Compartment model and prolife each have 4 parameters
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A+B
α
β
B
A1
Dose (V1)
k10
A2
k12
k21
Pharmacometrics
Elimination from the peripheral compartment not identifiable.
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A+B
α
β
B
A1
Dose (V1)
k10
A2
k12
k21
k20
4 parameters
of information
5 parameters
In model is too many
Pharmacometrics
Alternative parameterization for �2 compartment model
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A1
Dose (V1)
k10
A2
k12
k21
CL = k10·V1
Q = k12·V1
V2 = V1·(k12/k21)
{V1, k10, k12, k21}
A1
Dose (V1)
CL
A2
Q
V2
{V1, CL, Q, V2}
Pharmacometrics
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Total drug in = Total drug out
If clearance doesn’t depend on concentration (linear)
Pharmacometrics
Be careful in interpreting parameters from the model
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A1
Dose (V1)
CL
A2
Q
V2
Pharmacometrics
Really, there are many more peripheral compartments, but the 2 compartment approximation often works
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(wikipedia for PBPK)
Pharmacometrics
Key Lessons
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Pharmacometrics
Absorption and bioavailability
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Pharmacometrics
Routes of Administration (examples)
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Inhalation (lung)
Nasal (nose)
Oral (mouth)
Intravenous (vein)
Intramuscular (muscle)
Subcutaneous (under skin)
Transdermal (skin patch)
Pharmacometrics
Oral dose of drug is absorbed through the gastrointestinal tract
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Wikipedia
Pharmacometrics
Bioavailability (some drug is lost)
85
Oral
dose
small
molecule
Subcutaneous
dose
biologic
Dose
To thoracic duct
and blood
Skin
Lymph
node
Oral
Absorption
Subcutaneous
Absorption
Intestinal
First Pass Elimination
Inject Site
First Pass Elimination
Hepatic
First Pass Elimination
Lymphatic
First Pass Elimination
AJM
(
systemic
circulation
Pharmacometrics
Oral dose vs intravenous dose
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β
Intravenous Bolus
Oral Dose
| IV Bolus | Oral |
Absorption | No | Yes |
Initial conc. (C0) | Dose/V1 | 0 |
Time of max conc. | 0 | >0 |
AUC0-∞ | Dose/CL | < Dose/CL |
Terminal slope | β | β |
Pharmacometrics
Oral Dose
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Declining
concentrations
are due to drug
elimination from
the body
Increasing
concentrations
are due to drug
absorption
At Tmax, absorption has essentially stopped
Cumulative drug
absorbed over time
Pharmacometrics
Compartment Model with Absorption
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A1
Dose
k10
A2
k12
k21
Adepot
F, ka
absorption
elimination
distribution
ka = absorption rate
F = bioavailability [0-1]
fraction of drug
absorbed
Pharmacometrics
Application – extended release prolongs exposure and can improve safety (reduce peak-trough ratio)
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ka = 0.03/h
ka = 0.3/h
Pharmacometrics
More complex absorption models can be developed
90
Abuhelwa, Ahmad Y., et al. "Food, gastrointestinal pH, and models of oral drug absorption." European Journal of Pharmaceutics and Biopharmaceutics 112 (2017): 234-248.
Pharmacometrics
Question
91
Pharmacometrics
Updating average concentration formula
92
Total drug in = Total drug out
If clearance is linear
Formula doesn’t depend on absorption, but it does depend on F
Pharmacometrics
Key Lessons
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Pharmacometrics
Allometric Scaling
Effect of body size on PK parameters
Pharmacometrics
Often, we want to predict PK in humans from animal data
Moore, Brioni R., et al. "Pharmacokinetics, pharmacodynamics, and allometric scaling of chloroquine in a murine malaria model." Antimicrobial agents and chemotherapy 55.8 (2011): 3899-3907. Pictures from wikipedia
Slope of line ~ ¾ in log-space
Pharmacometrics
Many biological processes scale with body weight
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West, Geoffrey B., and James H. Brown. "The origin of allometric scaling laws in biology from genomes to ecosystems: towards a quantitative unifying theory of biological structure and organization." Journal of experimental biology 208.9 (2005): 1575-1592.
Total number of heart beats before death is independent of weight:
(Heart rate)·(Lifespan) = WT0
Mammals get about 1 billion heart beats in their lifetime (from hamster to elephant)
Pharmacometrics
Metabolic rate ~ WT3/4
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Cells
Elephant
Mitochondria
Shrew
West, Geoffrey B., and James H. Brown. "The origin of allometric scaling laws in biology from genomes to ecosystems: towards a quantitative unifying theory of biological structure and organization." Journal of experimental biology 208.9 (2005): 1575-1592.
log (weight)
log (metabolic power)
Mammals
slope = 3/4
slope = 3/4
Pharmacometrics
The reason for metabolism ~ WT3/4 �is to maximize surface area (SA)
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Pharmacometrics
Blood vessels follow fractal patterns
99
What is the optimal fractal dimensions to maximize surface area?
Pharmacometrics
A fractal is a self similar as you zoom in to smaller scales
100
Pharmacometrics
An example of building a fractal
101
Koch Curve
Length
1
64/27 = 2.4
256/81 = 3.2
4n/3n→∞
fractal dimension =
log(4)/log(3) = 1.26
4/3 = 1.3
each line is 1/3 the size of the original line. But now there are 4 segments (instead of 3)
60°
16/9 = 1.8
Fractal
Pharmacometrics
Fractal geometry can increase the dimensionality of the space
102
0°
0°
90°
60°
30°
D = 1
D = 1.26
D = 2
The largest a fractal dimension can be is 1 + spatial dimension
The surface area can go from 2 🡪 3 dimensions
angle of triangle
Pharmacometrics
Life has found a 4th dimension using fractal geometry! This is why CL ~ WT3/4
103
1. West, Geoffrey B., James H. Brown, and Brian J. Enquist. "The fourth dimension of life: fractal geometry and allometric scaling of organisms." Science 284.5420 (1999): 1677-1679.
Pharmacometrics
Key Lessons
104
Pharmacometrics
Where PK measurements and models are used
105
Pharmacometrics
Bioequivalence Postulate
106
From Pete Bonate
Pharmacometrics
107
Mean clozapine plasma concentrations after 7 days of 100 mg BID for 2 formulations in 18 schizophrenic subjects
Tassaneeyakul W et al. Steady-state bioequivalence of clozapine tablet in schizophrenic patients. J Pharm Pharmaceutic Sci 8, 47, 2005
From Pete Bonate
Pharmacometrics
For drugs that are cleared by kidney, kidney function will affect exposure
108
~ Measure of kidney function
Roland and Tozer, Figure 13-14
Pharmacometrics
Some factors that may impact drug concentrations
109
Factor | Parameter | Mechanism |
Liver and kidney function | CL | Small molecules that are cleared by liver and kidneys |
Weight | CL, V | Relates to size of patient (V) and metabolizing tissue (CL) |
Comedications (e.g. CYP inhibitor) | CL | Affects function of metabolizing enzyme |
Comedications (proton pump inhib) | F, ka | Affects gut pH and how well it absorbs drugs |
Taken with food | F, ka | impacts how |
Genetics (CYP variants) | CL | Some CYPs are polyclonal |
Pharmacometrics
Backups
110
Pharmacometrics
Acetaminophen Overdose
111
From Pete Bonate
Pharmacometrics
112
From Pete Bonate
Pharmacometrics
Biliary Elimination
113
From Pete Bonate and wikipedia
Liver
Gall-
bladder
Bile
Duct
Intestine
Pharmacometrics
In the two compartment model, “volume” is a function of time
114
Pharmacometrics
Sketch of derivation of Vz and Vss
115
Pharmacometrics
Definition of a dimension
116
ε = 1
ε = 1
ε = 1/2
ε = 1/3
Pharmacometrics
For normal shapes, surface area relates to weight by 2/3 power
SA = 6L2
V = L3
SA = c1·V2/3 ~ WT2/3
c1 is a constant
117
SA = 4𝜋R2
V = (4/3)𝜋R3
SA = c2·V2/3 ~ WT2/3
c2 is a constant
R
L
Pharmacometrics