Cytogenetics
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Chapter 3
Lecture structure
Overview
cause of pregnancy loss.
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Basic definitions and terminology
Karyotype
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Photograph of Metaphase Chromosomes (Karyotype) of an individual male.
Karyotype
Human Metaphase Chromosomes. Idealized Drawing (Karyogram), represents a drawing of each type of chromosome; the presentation is haploid (only one copy of each chromosome is shown).
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Chromosome banding
(to digest some associated protein) and then stained with Giemsa, a dye
that binds DNA.
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must be identified in other ways (FISH).
The chromosomes depicted in the figure have been stained with Giemsa.
Chromosome nomenclature
Common Symbols Used in Karyotype Nomenclature
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Chromosome nomenclature
One of the characteristics described is the relative position of the centromere.
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Metacentric chromosomes: have the centromere near the middle.
Submetacentric chromosomes have the centromere displaced toward one end. The p and q arms are evident.
Acrocentric chromosomes have the centromere far toward one end. The p arm contains little genetic information, most of it residing on the q arm.
Only the acrocentric chromosomes are
involved in Robertsonian translocations.
Numerical chromosome abnormalities
Euploidy
Euploid Cells (multiple of 23 chromosomes)
• Haploid are euploid cells that have 23 chromosomes (one member of each pair): gametes (sperm and egg cells)
• Diploid (46 chromosomes or both members of each pair): most somatic cells
Two types of euploid cells with abnormal numbers of chromosomes (rare lethal condition) are seen in humans:
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Numerical chromosome abnormalities
Euploidy
Triploidy, which usually occurs as a result of the fertilization of an ovum by 2 sperm cells, is common at conception, but the vast majority of these conceptions are lost prenatally. However, about 1 in 10,000 live births is a triploid. These babies have multiple defects of the heart and central nervous system, and they do not survive.
Tetraploidy, this lethal condition is much rarer than triploidy among live births: Only a few cases have been described.
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Numerical chromosome abnormalities
Aneuploidy
Aneuploidy, a deviation from the euploid number, represents the gain (+) or
loss (-) of a specific chromosome.
Two major forms of aneuploidy are observed:
• Monosomy (loss of a chromosome)
• Trisomy (gain of a chromosome)
Two generalizations are helpful:
• All autosomal monosomies are inconsistent with a live birth.
• Only 3 autosomal trisomies (trisomy 13, 18, and 21) are consistent with
a live birth.
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Numerical chromosome abnormalities
Trisomy 21 (47,XY,+21 or 47,XX,+21); Down Syndrome
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• Most common autosomal trisomy
• Mental retardation
• Short stature
• Hypotonia
• Depressed nasal bridge, upslanting palpebral fissures, epicanthal fold
• Congenital heart defects in approximately 40% of cases
• Increased risk of acute lymphoblastic leukemia
• Alzheimer disease by fifth or sixth decade (amyloid precursor protein,
APP gene on chromosome 21)
• Reduced fertility
• Risk increases with increased maternal age
Numerical chromosome abnormalities
Trisomy 18 (47,XY,+18 or 47,XX,+18); Edward Syndrome
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• Clenched fist with overlapping fingers
• Inward turning, “rocker-bottom” feet
• Congenital heart defects
• Low-set ears,
micrognathia (small lower jaw)
• Mental retardation
• Very poor prognosis
Numerical chromosome abnormalities
Trisomy 13 (47,XY,+13 or 47,XX,+13); Patau Syndrome
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• Polydactyly (extra fingers and toes)
• Cleft lip, palate
• Microphthalmia (small eyes)
• Microcephaly, mental retardation
• Cardiac and renal defects
• Very poor prognosis
Numerical chromosome abnormalities
Aneuploidy involving the sex chromosomes is relatively common and tends to have less severe consequences than does autosomal aneuploidy.
Some generalizations are helpful:
• At least one X chromosome is required for survival.
• If a Y chromosome is present, the phenotype is male (with minor
exceptions).
• If more than one X chromosome is present, all but one will become a Barr body in each cell.
The two important sex chromosome aneuploidies are
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Numerical chromosome abnormalities
Klinefelter Syndrome (47,XXY)
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• Testicular atrophy
• Infertility
• Gynecomastia
• Female distribution of hair
• Low testosterone
• Elevated FSH and LH
• High-pitched voice
Numerical chromosome abnormalities
Turner Syndrome (45,X or 45,XO)
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• Only monosomy consistent with life
• 50% are 45,X
• Majority of others are mosaics for 45,X and one other cell lineage
(46,XX, 47,XXX, 46,XY)
• Females with 45,X;46,XY are at increased risk for gonadal blastoma.
• Short stature
• Edema of wrists and ankles in newborn
• Cystic hygroma in utero resulting in excess nuchal skin and “webbed” neck
• Primary amenorrhea
• Coarctation of the aorta or other congenital heart defect in some cases
• Infertility
• Gonadal dysgenesis
Nondisjunction is the usual cause of aneuploidies
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Disjunction During Normal Meiosis
Nondisjunction is the usual cause of aneuploidies
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Nondisjunction During Meiosis 1
Nondisjunction is the usual cause of aneuploidies
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Nondisjunction During Meiosis 2
Nondisjunction is the usual cause of aneuploidies
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Edward, Patau, Turner, and Klinefelter syndromes.
• Nondisjunction is more likely to occur during oogenesis than during
spermatogenesis.
Environmental agents (e.g., radiation, alcohol) appear to have no measurable influence.
• Nondisjunction is more likely in meiosis I than meiosis II.
Clinical Correlate: Maternal Age and Risk of Down Syndrome
Surveys of babies with trisomy 21 show that 90–95% of the time, the extra copy of the chromosome is contributed by the mother (similar figures are obtained for trisomies of the 18th and 13th chromosomes).
The increased risk of Down syndrome with maternal age is well documented.
• For women age <30 the risk of bearing a child with Down is <1/1,000.
• At age 40 the risk increases to 1/100.
• At age ≥45 the risk increases to about 1/25.
Nondisjunction is the usual cause of aneuploidies
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Clinical Correlate: Maternal Age and Risk of Down Syndrome
This so-called triple screen can detect approximately 70% of fetuses with Down.
Structural chromosome abnormalities
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Structural chromosome abnormalities
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reciprocal and Robertsonian.
Reciprocal translocations occur when genetic material is exchanged between nonhomologous chromosomes; for example, chromosomes 2 and 8. If this happens during gametogenesis, the offspring will carry the reciprocal translocation in all his or her cells and will be called a translocation carrier.
The karyotype would be 46,XY,t(2p;8p) or 46,XX,t(2p;8p). Because this individual has all of the genetic material (balanced, albeit some of it misplaced because of the translocation), there are often no clinical consequences other than during reproduction.
A Reciprocal Translocation
Structural chromosome abnormalities
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Consequences of a Reciprocal Translocation (Illustrated with Male)
Alternate and adjacent segregation are diagrams used to predict the possible gametes
produced by a translocation carrier.
• Adjacent segregation: chromosomes from adjacent quadrants (next to each other) enter a gamete
• Alternate segregation: chromosomes from alternate (diagonally opposed)
quadrants enter a gamete
Structural chromosome abnormalities
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Structural chromosome abnormalities
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Chronic Myelogenous Leukemia and the Philadelphia Chromosome
Rearrangements in somatic cells can lead to the formation of cancers by
altering the genetic control of cellular proliferation.
A classic example is a reciprocal translocation of the long arms of chromosomes 9 and 22, termed the Philadelphia chromosome.
This translocation alters the activity of the abl proto-oncogene (proto-oncogenes can lead to cancer).
When this alteration occurs in hematopoietic cells, it can result in chronic myelogenous leukemia.
Structural chromosome abnormalities
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Translocations are seen in a variety of cancers.
• t(9;22) chronic myelogenous leukemia (c-abl)
• t(15;17) acute myelogenous leukemia (retinoid receptor-α)
• t(14;18) follicular lymphomas (bcl-2 that inhibits apoptosis)
• t(8;14) Burkitt lymphoma (c-myc)
• t(11;14) mantle cell lymphoma (cyclin D)
Translocation between chromosome 9 and 22.The altered chr. 22 is the “Philadelphia chromosome”.
Structural chromosome abnormalities
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A Robertsonian Translocation
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Consequences of a Robertsonian Translocaton
in One Parent (Illustrated with Male)
Structural chromosome abnormalities
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Structural chromosome abnormalities
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Structural chromosome abnormalities
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Structural chromosome abnormalities
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interstitial deletions (material within the chromosome is lost) may be caused by agents that cause chromosome breaks and by unequal crossover during meiosis.
The figure below shows both an
interstitial deletion and a terminal
deletion of 5p.
Both result in Cri-du-chat syndrome.
• 46,XX or 46,XY, del(5p)
• High-pitched, cat-like cry
• Mental retardation, microcephaly
• Congenital heart disease
Structural chromosome abnormalities
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• DiGeorge syndrome: congenital absence of the thymus and parathyroids,
hypocalcemic tetany, T-cell immunodeficiency, characteristic facies with cleft palate, heart defects.
• Wilms tumor: aniridia, genital abnormalities, mental retardation (WAGR)
• Williams syndrome: hypercalcemia, supravalvular aortic stenosis, mental retardation, characteristic facies
Other chromosome abnormalities
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• Translocations (Robertsonian and reciprocal)
• Deletions and duplications
• Inversions (pericentric and paracentric)
• Ring chromosomes
• Isochromosomes
Their frequency and clinical consequences tend to be less severe than those of translocations and deletions.
Other chromosome abnormalities
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Pericentric Inversion of Chromosome 16
A male infant, the product of a full-term pregnancy, was born with
hypospadias and ambiguous genitalia. He had a poor sucking reflex, fed
poorly, and had slow weight gain. He had wide-set eyes, a depressed nasal
bridge, and microcephaly. The father stated that several members of his
family, including his brother, had an abnormal chromosome 16. His brother
had two children, both healthy, and the father assumed that he would also
have normal children. Karyotype analysis confirmed that the father had a
pericentric inversion of chromosome 16 and that his infant son had a
duplication of material on 16q, causing a small partial trisomy.
Other chromosome abnormalities
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at least once for each human chromosome.
Ring X-Chromosome
Other chromosome abnormalities
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long arm of the X chromosome would be
46,X,i(Xq); this karyotype results in an
individual with Turner syndrome, indicating
that most of the critical genes responsible
for the Turner phenotype are on Xp.
Transverse separation
Isochromosome X
Advances in molecular cytogenetics
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Although chromosome abnormalities are still commonly visualized by examining
metaphase chromosomes under a microscope, several powerful new techniques
combine cytogenetics with modern molecular methods.
A normal diploid cell with 2 signals for chr. 21
A trisomic cell with 3 signals for chr. 21
Advances in molecular cytogenetics
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Advances in molecular cytogenetics
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Spectral Karyotyping
Chapter 3: Cytogenetics
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1. A 26-year-old woman has produced two children with Down syndrome,
and she has also had two miscarriages. Which of the following would be
the best explanation?
A. Her first cousin has Down syndrome.
B. Her husband is 62 years old.
C. She carries a reciprocal translocation involving chromosomes 14 and 18.
D. She carries a Robertsonian translocation involving chromosomes 14 and 21.
E. She was exposed to multiple x-rays as a child.
Chapter 3: Cytogenetics
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2. A 6-year-old boy has a family history of mental retardation and has developmental delay and some unusual facial features. He is being evaluated
for possible fragile X syndrome. Which of the following would be most
useful in helping establish the diagnosis?
A. Genetic test for a trinucleotide repeat expansion in the fragile X gene
B. IQ test
C. Karyotype of the child’s chromosomes
D. Karyotype of the father’s chromosomes
E. Measurement of testicular volume
Chapter 3: Cytogenetics
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3. A couple has one son, who is age 7. Multiple attempts to have a second
child have ended in miscarriages and spontaneous abortions. Karyotypes
of the mother, the father, and the most recently aborted fetus are represented schematically below. What is the most likely explanation for the
most recent pregnancy loss?
A. Aneuploidy in the fetus
B. Fetus identified as a reciprocal translocation carrier
C. Nondisjunction during oogenesis in the mother
D. Partial monosomy and trisomy in the fetus
E. Unbalanced chromosomal material in the father
Chapter 3: Cytogenetics
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4. A woman brings her 16-year-old daughter to a physician because she has not yet begun menstruating. Although her parents are both 1.75 meters, the patient is 1.5 meters and has always been below the 50th percentile in height. Physical examination reveals no breast development.
She has no problems in school and is of normal intelligence.
What is the most likely underlying basis for her condition?
A. A 45,X karyotype
B. A balanced reciprocal translocation
C. A balanced Robertsonian translocation
D. Two Barr bodies
E. Deletion of an imprinted locus
Chapter 3: Cytogenetics
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5. A 38-year-old woman in her 15th week of pregnancy undergoes ultrasonography that reveals an increased area of nuchal transparency.
Amniocentesis is recommended and performed at 16 weeks’ gestation.
The amniotic karyotype is 46,XYadd(18)(p.11.2), indicating additional
chromosomal material on the short arm of one chromosome 18 at band
11.2. All other chromosomes are normal.
What is the most likely cause of this fetal karyotype?
A. A balanced reciprocal translocation in one of the parents
B. A balanced Robertsonian translocation in one of the parents
C. An isochromosome 18i(p) in one of the parents
D. Nondisjunction during meiosis 1 in one of the parents
E. Nondisjunction during meiosis 2 in one of the parents
Chapter 3: Cytogenetics
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6. A 37-year-old woman is brought to emergency department because of
crampy abdominal pain and vaginal bleeding for 3 hours. She is 11 weeks
pregnant. This is her first pregnancy. Her pregnancy has been unremarkable until this episode. Her temperature is 36.8 C (98.2 F), pulse is 106/min, blood pressure is 125/70 mm Hg, and respiration rate is 22/min. Speculum examination shows the presence of blood in the vagina and cervical dilatation. Inevitable spontaneous abortion is suspected. After discussing the condition with the patient, she gave her consent for dilatation and curettage. What is the most common cause of spontaneous abortions?
A. Chromosomal abnormality, polyploidy
B. Chromosomal abnormality, monosomy X
C. Chromosomal abnormality, trisomy
D. Effects of environmental chemicals
E. Immunologic rejection
F. Infection
G. Maternal endocrinopathies
H. Physical stresses
I. Teratogenic drugs